Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47045 * 2 1 4 4 H 1.08995 * 109.47024 * 55.00541 * 3 2 1 5 5 C 1.50696 * 109.46980 * 175.00437 * 3 2 1 6 6 H 1.08000 * 119.99992 * 120.00098 * 5 3 2 7 7 C 1.37876 * 120.00147 * 300.00041 * 5 3 2 8 8 N 1.31516 * 120.00292 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99786 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46774 * 90.00221 * 9 7 5 11 11 H 1.48500 * 109.46842 * 209.99853 * 9 7 5 12 12 H 1.48492 * 109.47004 * 330.00036 * 9 7 5 13 13 N 1.46498 * 109.47129 * 295.00465 * 3 2 1 14 14 C 1.34778 * 120.00214 * 85.27562 * 13 3 2 15 15 O 1.21284 * 119.99693 * 359.72322 * 14 13 3 16 16 C 1.50697 * 120.00277 * 179.72062 * 14 13 3 17 17 C 1.52997 * 109.47105 * 300.27578 * 16 14 13 18 18 C 1.53003 * 109.46690 * 60.27364 * 16 14 13 19 19 C 1.50699 * 109.47247 * 180.27276 * 16 14 13 20 20 C 1.41377 * 128.00551 * 244.52508 * 19 16 14 21 21 C 1.50702 * 126.80611 * 0.02844 * 20 19 16 22 22 N 1.30180 * 106.39471 * 179.89235 * 20 19 16 23 23 O 1.20922 * 111.60214 * 0.38874 * 22 20 19 24 24 C 1.34035 * 111.56771 * 359.74928 * 23 22 20 25 25 C 1.50704 * 126.77682 * 180.02562 * 24 23 22 26 26 H 1.09007 * 109.47227 * 299.99439 * 1 2 3 27 27 H 1.09003 * 109.47570 * 59.99551 * 1 2 3 28 28 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46489 * 240.00492 * 2 1 3 30 30 H 1.08995 * 109.47273 * 120.00326 * 2 1 3 31 31 H 0.97003 * 119.99875 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00155 * 265.00044 * 13 3 2 33 33 H 1.08997 * 109.47367 * 65.59911 * 17 16 14 34 34 H 1.09005 * 109.46874 * 185.60013 * 17 16 14 35 35 H 1.09004 * 109.47209 * 305.59749 * 17 16 14 36 36 H 1.08997 * 109.47142 * 65.01827 * 18 16 14 37 37 H 1.08999 * 109.47037 * 185.01605 * 18 16 14 38 38 H 1.08993 * 109.47423 * 305.01590 * 18 16 14 39 39 H 1.09001 * 109.46791 * 83.83621 * 21 20 19 40 40 H 1.08998 * 109.47459 * 203.83379 * 21 20 19 41 41 H 1.09000 * 109.47097 * 323.83800 * 21 20 19 42 42 H 1.09001 * 109.46679 * 274.62648 * 25 24 23 43 43 H 1.08995 * 109.47316 * 34.62509 * 25 24 23 44 44 H 1.09003 * 109.47241 * 154.63238 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 5.4540 0.8804 1.3360 9 14 3.0964 0.1087 2.5699 10 1 2.8757 -1.3274 2.2631 11 1 3.7938 0.2346 3.8749 12 1 1.7878 0.8071 2.6386 13 7 1.6523 2.0976 -1.2517 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6372 -0.4322 16 6 0.0407 3.3486 -2.6504 17 6 1.0193 4.4861 -2.9490 18 6 0.0739 2.3336 -3.7948 19 6 -1.3524 3.9071 -2.5146 20 6 -2.5147 3.5296 -3.2254 21 6 -2.6167 2.4688 -4.2910 22 7 -3.4801 4.2778 -2.7751 23 8 -3.0905 5.0420 -1.9227 24 6 -1.7796 4.8910 -1.6875 25 6 -0.9457 5.6629 -0.6976 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.8771 0.4819 2.1126 32 1 2.2717 2.1233 -1.9978 33 1 2.0084 4.0723 -3.1454 34 1 0.6769 5.0398 -3.8232 35 1 1.0698 5.1566 -2.0910 36 1 -0.6859 1.5706 -3.6259 37 1 -0.1256 2.8426 -4.7378 38 1 1.0569 1.8646 -3.8360 39 1 -2.7443 1.4934 -3.8216 40 1 -3.4733 2.6785 -4.9317 41 1 -1.7064 2.4673 -4.8905 42 1 -0.6021 6.5898 -1.1569 43 1 -1.5470 5.8943 0.1816 44 1 -0.0850 5.0631 -0.4017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281046071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = 19.819234 kcal Electronic energy + Delta-G solvation = -25548.431421 eV Core-core repulsion = 22083.397497 eV Total energy + Delta-G solvation = -3465.033924 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.79523 -39.86296 -36.61105 -35.18265 -33.86222 -32.86240 -32.11829 -31.10056 -29.33161 -27.75984 -27.50478 -26.69768 -23.88918 -22.92315 -22.13746 -20.43453 -19.93622 -19.23815 -17.61903 -17.16626 -16.52233 -15.95200 -15.67619 -15.15341 -14.67186 -14.30432 -14.06398 -13.74584 -13.58835 -13.33228 -13.13221 -12.98184 -12.80860 -12.59795 -12.30218 -12.22913 -12.19641 -11.87415 -11.84996 -11.73759 -11.43611 -11.24278 -11.06303 -10.90805 -10.65727 -10.54382 -9.95694 -9.78555 -9.56673 -9.26525 -9.11119 -8.86132 -8.77810 -8.08999 -6.24705 -4.27260 1.62406 2.30490 3.17670 3.21170 3.23428 3.32924 3.37489 3.93777 4.21460 4.28200 4.54659 4.65291 4.83643 4.94058 5.09185 5.22375 5.29848 5.36983 5.44496 5.47886 5.49144 5.58625 5.62451 5.71545 5.78750 5.84192 5.90687 5.94327 5.99620 6.03254 6.04329 6.15536 6.21333 6.28447 6.62719 6.67262 6.81770 6.93060 7.23794 7.26726 7.48354 8.11932 8.40776 8.49317 8.72452 8.90999 9.36485 10.87256 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.004794 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.922651 B = 5839.487456 C = 5872.238626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.512 3.488 15 O -0.540 6.540 16 C -0.004 4.004 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.173 4.173 20 C 0.030 3.970 21 C -0.090 4.090 22 N -0.375 5.375 23 O 0.089 5.911 24 C -0.002 4.002 25 C -0.075 4.075 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.394 0.606 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 5.892 -10.637 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.418 6.418 16 C -0.008 4.008 17 C -0.200 4.200 18 C -0.206 4.206 19 C -0.178 4.178 20 C -0.129 4.129 21 C -0.147 4.147 22 N -0.083 5.083 23 O 0.027 5.973 24 C -0.065 4.065 25 C -0.132 4.132 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.227 0.773 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.206 5.915 -10.096 16.909 hybrid contribution 0.634 -0.829 0.516 1.164 sum -11.572 5.086 -9.580 15.860 Atomic orbital electron populations 1.21865 0.96972 0.98959 1.02229 1.22284 0.94284 1.00038 1.01058 1.19139 0.95568 0.88450 0.82831 0.93361 1.21037 0.88592 1.39828 1.07802 0.90193 1.24820 0.94819 0.95119 0.97638 1.69865 1.08674 1.44462 1.29839 0.86927 0.80967 0.79996 0.80971 1.20291 1.22185 1.18497 1.46138 1.14802 1.55631 1.17893 1.20121 0.82554 0.79203 0.88520 1.90680 1.51262 1.59683 1.40192 1.19025 0.90179 0.96206 0.95387 1.21962 0.98339 0.97207 1.02504 1.22267 1.03426 0.98310 0.96605 1.20241 0.96106 1.00424 1.00988 1.23277 0.89145 0.99807 1.00675 1.20663 1.04120 0.94920 0.95032 1.73782 1.23300 1.06007 1.05176 1.84743 1.22937 1.46514 1.43133 1.24087 0.84329 0.99003 0.99124 1.20434 0.98246 0.98908 0.95591 0.92957 0.92954 0.95086 0.92331 0.92844 0.92277 0.77260 0.90984 0.91672 0.91543 0.91128 0.91042 0.91223 0.90227 0.91148 0.88642 0.89909 0.89978 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.52 37.16 0.32 -2.52 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.11 16 3 C 0.24 5.47 1.83 -69.08 -0.13 5.35 16 4 H 0.05 1.21 6.63 -51.93 -0.34 0.87 16 5 C -0.53 -13.81 9.31 -34.44 -0.32 -14.13 16 6 H 0.08 2.17 7.98 -52.49 -0.42 1.75 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 9 Si 0.88 21.32 24.41 -169.99 -4.15 17.17 16 10 H -0.28 -6.51 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 13 N -0.70 -12.67 4.78 -54.93 -0.26 -12.93 16 14 C 0.51 8.77 4.22 -10.99 -0.05 8.72 16 15 O -0.54 -11.02 11.83 5.55 0.07 -10.95 16 16 C 0.00 -0.05 0.63 -156.81 -0.10 -0.15 16 17 C -0.14 -1.58 8.06 37.16 0.30 -1.28 16 18 C -0.15 -1.59 6.69 37.16 0.25 -1.34 16 19 C -0.17 -2.48 4.31 -104.42 -0.45 -2.93 16 20 C 0.03 0.43 7.25 -82.10 -0.60 -0.17 16 21 C -0.09 -0.95 8.60 36.01 0.31 -0.64 16 22 N -0.37 -5.92 12.07 33.42 0.40 -5.52 16 23 O 0.09 1.38 11.20 17.19 0.19 1.57 16 24 C 0.00 -0.03 6.89 -35.30 -0.24 -0.27 16 25 C -0.07 -0.89 8.85 36.01 0.32 -0.57 16 26 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 27 H 0.05 1.01 5.66 -51.93 -0.29 0.72 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 30 H 0.05 1.22 3.21 -51.93 -0.17 1.06 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.39 6.34 7.43 -40.82 -0.30 6.03 16 33 H 0.07 0.74 7.71 -51.93 -0.40 0.34 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.75 6.05 -51.93 -0.31 0.44 16 36 H 0.07 0.78 5.99 -51.93 -0.31 0.47 16 37 H 0.07 0.61 6.61 -51.93 -0.34 0.26 16 38 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 39 H 0.08 0.82 7.82 -51.93 -0.41 0.42 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.81 4.68 -51.93 -0.24 0.57 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.35 5.51 -51.93 -0.29 1.07 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -31.31 332.17 -4.94 -36.25 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.35 Total: 5.36 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.62 Total: -10.97 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.91 Total: -43.43 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.26 Total: -9.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.31 -4.94 -36.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281046071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.065 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds