Wall clock time and date at job start Tue Mar 31 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47045 * 2 1 4 4 H 1.08995 * 109.47024 * 55.00541 * 3 2 1 5 5 C 1.50696 * 109.46980 * 175.00437 * 3 2 1 6 6 H 1.08000 * 119.99992 * 120.00098 * 5 3 2 7 7 C 1.37876 * 120.00147 * 300.00041 * 5 3 2 8 8 N 1.31516 * 120.00292 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99786 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46774 * 90.00221 * 9 7 5 11 11 H 1.48500 * 109.46842 * 209.99853 * 9 7 5 12 12 H 1.48492 * 109.47004 * 330.00036 * 9 7 5 13 13 N 1.46498 * 109.47129 * 295.00465 * 3 2 1 14 14 C 1.34778 * 120.00214 * 85.27562 * 13 3 2 15 15 O 1.21284 * 119.99693 * 359.72322 * 14 13 3 16 16 C 1.50697 * 120.00277 * 179.72062 * 14 13 3 17 17 C 1.52997 * 109.47105 * 300.27578 * 16 14 13 18 18 C 1.53003 * 109.46690 * 60.27364 * 16 14 13 19 19 C 1.50699 * 109.47247 * 180.27276 * 16 14 13 20 20 C 1.41377 * 128.00551 * 244.52508 * 19 16 14 21 21 C 1.50702 * 126.80611 * 0.02844 * 20 19 16 22 22 N 1.30180 * 106.39471 * 179.89235 * 20 19 16 23 23 O 1.20922 * 111.60214 * 0.38874 * 22 20 19 24 24 C 1.34035 * 111.56771 * 359.74928 * 23 22 20 25 25 C 1.50704 * 126.77682 * 180.02562 * 24 23 22 26 26 H 1.09007 * 109.47227 * 299.99439 * 1 2 3 27 27 H 1.09003 * 109.47570 * 59.99551 * 1 2 3 28 28 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46489 * 240.00492 * 2 1 3 30 30 H 1.08995 * 109.47273 * 120.00326 * 2 1 3 31 31 H 0.97003 * 119.99875 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00155 * 265.00044 * 13 3 2 33 33 H 1.08997 * 109.47367 * 65.59911 * 17 16 14 34 34 H 1.09005 * 109.46874 * 185.60013 * 17 16 14 35 35 H 1.09004 * 109.47209 * 305.59749 * 17 16 14 36 36 H 1.08997 * 109.47142 * 65.01827 * 18 16 14 37 37 H 1.08999 * 109.47037 * 185.01605 * 18 16 14 38 38 H 1.08993 * 109.47423 * 305.01590 * 18 16 14 39 39 H 1.09001 * 109.46791 * 83.83621 * 21 20 19 40 40 H 1.08998 * 109.47459 * 203.83379 * 21 20 19 41 41 H 1.09000 * 109.47097 * 323.83800 * 21 20 19 42 42 H 1.09001 * 109.46679 * 274.62648 * 25 24 23 43 43 H 1.08995 * 109.47316 * 34.62509 * 25 24 23 44 44 H 1.09003 * 109.47241 * 154.63238 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 5.4540 0.8804 1.3360 9 14 3.0964 0.1087 2.5699 10 1 2.8757 -1.3274 2.2631 11 1 3.7938 0.2346 3.8749 12 1 1.7878 0.8071 2.6386 13 7 1.6523 2.0976 -1.2517 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6372 -0.4322 16 6 0.0407 3.3486 -2.6504 17 6 1.0193 4.4861 -2.9490 18 6 0.0739 2.3336 -3.7948 19 6 -1.3524 3.9071 -2.5146 20 6 -2.5147 3.5296 -3.2254 21 6 -2.6167 2.4688 -4.2910 22 7 -3.4801 4.2778 -2.7751 23 8 -3.0905 5.0420 -1.9227 24 6 -1.7796 4.8910 -1.6875 25 6 -0.9457 5.6629 -0.6976 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.8771 0.4819 2.1126 32 1 2.2717 2.1233 -1.9978 33 1 2.0084 4.0723 -3.1454 34 1 0.6769 5.0398 -3.8232 35 1 1.0698 5.1566 -2.0910 36 1 -0.6859 1.5706 -3.6259 37 1 -0.1256 2.8426 -4.7378 38 1 1.0569 1.8646 -3.8360 39 1 -2.7443 1.4934 -3.8216 40 1 -3.4733 2.6785 -4.9317 41 1 -1.7064 2.4673 -4.8905 42 1 -0.6021 6.5898 -1.1569 43 1 -1.5470 5.8943 0.1816 44 1 -0.0850 5.0631 -0.4017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281046071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:19 Heat of formation + Delta-G solvation = -0.880694 kcal Electronic energy + Delta-G solvation = -25549.329037 eV Core-core repulsion = 22083.397497 eV Total energy + Delta-G solvation = -3465.931540 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.88256 -41.22095 -37.90889 -36.73281 -34.92541 -34.43609 -33.72494 -32.51480 -30.25384 -29.37341 -28.71382 -27.57677 -25.10296 -24.56081 -23.53081 -21.82523 -21.21664 -20.63706 -18.94416 -18.60377 -17.90163 -17.37850 -17.20041 -16.50830 -16.19583 -15.48736 -15.29152 -14.98703 -14.96042 -14.53227 -14.33258 -14.10315 -13.97132 -13.84134 -13.63565 -13.53998 -13.31637 -13.21638 -13.16990 -12.93310 -12.74881 -12.68214 -12.44699 -12.33303 -12.10429 -11.85256 -11.52968 -11.34486 -11.20031 -10.86622 -10.84075 -10.42013 -10.00950 -9.69716 -8.36018 -6.40231 0.52987 1.23370 1.26869 1.35729 1.44366 1.84104 2.17197 2.26676 2.56775 3.00474 3.22294 3.55757 3.65993 3.80404 3.98163 4.10608 4.24685 4.32946 4.37743 4.41900 4.47904 4.59528 4.62914 4.65288 4.73453 4.77611 4.80596 4.86440 4.91204 4.97039 5.01209 5.01335 5.11109 5.13339 5.15540 5.23956 5.34830 5.38383 5.44172 5.53161 5.71995 6.18013 6.62739 6.95184 7.23336 7.31834 7.53338 8.78966 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.004794 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.922651 B = 5839.487456 C = 5872.238626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.021 0.979 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.033 3.967 8 N -0.933 5.933 9 Si 0.931 3.069 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.262 1.262 13 N -0.694 5.694 14 C 0.513 3.487 15 O -0.574 6.574 16 C 0.006 3.994 17 C -0.143 4.143 18 C -0.151 4.151 19 C -0.187 4.187 20 C 0.030 3.970 21 C -0.091 4.091 22 N -0.401 5.401 23 O 0.074 5.926 24 C -0.009 4.009 25 C -0.073 4.073 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.269 0.731 32 H 0.405 0.595 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 5.607 -12.333 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.039 0.961 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.167 4.167 8 N -0.572 5.572 9 Si 0.759 3.241 10 H -0.189 1.189 11 H -0.223 1.223 12 H -0.187 1.187 13 N -0.344 5.344 14 C 0.300 3.700 15 O -0.454 6.454 16 C 0.002 3.998 17 C -0.200 4.200 18 C -0.208 4.208 19 C -0.192 4.192 20 C -0.129 4.129 21 C -0.148 4.148 22 N -0.112 5.112 23 O 0.015 5.985 24 C -0.073 4.073 25 C -0.130 4.130 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.241 0.759 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.060 5.647 -11.811 18.491 hybrid contribution 0.893 -0.672 1.011 1.507 sum -12.166 4.975 -10.799 17.012 Atomic orbital electron populations 1.21737 0.95494 1.00236 1.01432 1.22208 0.95508 0.98845 1.00954 1.18734 0.93114 0.89407 0.84035 0.96082 1.21281 0.90318 1.38154 1.06756 0.92152 1.25462 0.95535 0.95981 0.99684 1.69966 1.10143 1.46281 1.30805 0.86125 0.79384 0.79904 0.78679 1.18939 1.22347 1.18680 1.45930 1.15758 1.55859 1.16813 1.20818 0.81402 0.78202 0.89603 1.90669 1.52087 1.60714 1.41884 1.18998 0.89959 0.97104 0.93724 1.22010 0.98252 0.96567 1.03191 1.22361 1.03975 0.97825 0.96662 1.20473 0.96712 1.00623 1.01357 1.23867 0.88577 0.99695 1.00765 1.20846 1.05824 0.93740 0.94406 1.73772 1.24254 1.07075 1.06100 1.84713 1.23388 1.46925 1.43477 1.24555 0.84219 0.99233 0.99253 1.20489 0.97241 0.99525 0.95726 0.94861 0.92636 0.92701 0.91132 0.94156 0.92201 0.75921 0.90122 0.89450 0.92231 0.91366 0.88155 0.90391 0.89938 0.90214 0.86276 0.86922 0.89378 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.52 71.98 0.61 -4.38 16 2 C -0.14 -5.68 5.11 30.60 0.16 -5.52 16 3 C 0.25 11.22 1.83 44.25 0.08 11.30 16 4 H 0.02 1.07 6.63 -2.39 -0.02 1.06 16 5 C -0.53 -27.31 9.31 25.60 0.24 -27.07 16 6 H 0.06 3.30 7.98 -2.91 -0.02 3.28 16 7 C 0.03 1.82 5.45 84.65 0.46 2.28 16 8 N -0.93 -54.55 13.96 21.45 0.30 -54.25 16 9 Si 0.93 44.04 24.41 68.60 1.67 45.72 16 10 H -0.26 -11.84 6.83 99.48 0.68 -11.16 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.26 -12.36 6.53 99.48 0.65 -11.71 16 13 N -0.69 -24.49 4.78 -446.10 -2.13 -26.62 16 14 C 0.51 16.95 4.22 87.66 0.37 17.32 16 15 O -0.57 -23.17 11.83 -3.04 -0.04 -23.20 16 16 C 0.01 0.15 0.63 -53.67 -0.03 0.11 16 17 C -0.14 -2.79 8.06 71.98 0.58 -2.21 16 18 C -0.15 -2.71 6.69 71.98 0.48 -2.23 16 19 C -0.19 -5.05 4.31 -19.74 -0.09 -5.13 16 20 C 0.03 0.80 7.25 43.58 0.32 1.11 16 21 C -0.09 -1.67 8.60 71.24 0.61 -1.05 16 22 N -0.40 -12.32 12.07 -49.55 -0.60 -12.91 16 23 O 0.07 2.26 11.20 71.68 0.80 3.06 16 24 C -0.01 -0.26 6.89 25.04 0.17 -0.09 16 25 C -0.07 -1.68 8.85 71.24 0.63 -1.05 16 26 H 0.03 1.36 7.85 -2.38 -0.02 1.35 16 27 H 0.05 2.05 5.66 -2.39 -0.01 2.03 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.04 1.78 3.21 -2.39 -0.01 1.78 16 31 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.41 12.41 7.43 -92.71 -0.69 11.72 16 33 H 0.08 1.44 7.71 -2.39 -0.02 1.42 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.25 6.05 -2.38 -0.01 1.23 16 36 H 0.07 1.28 5.99 -2.39 -0.01 1.26 16 37 H 0.10 1.24 6.61 -2.39 -0.02 1.22 16 38 H 0.08 1.28 7.44 -2.39 -0.02 1.27 16 39 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.12 1.55 4.68 -2.39 -0.01 1.54 16 42 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 2.14 5.51 -2.39 -0.01 2.13 16 Total: -1.00 -68.12 332.17 4.86 -63.25 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.26 Total: 21.55 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 4.60 Total: -16.60 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -2.43 Total: -93.78 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.77 Total: -20.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.67 Total: 45.72 kcal Total: -68.12 4.86 -63.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281046071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.373 kcal (2) G-P(sol) polarization free energy of solvation -68.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds