Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47185 * 2 1 4 4 H 1.09001 * 109.47473 * 185.16166 * 3 2 1 5 5 C 1.50697 * 109.47340 * 305.16360 * 3 2 1 6 6 H 1.08002 * 120.00153 * 120.00224 * 5 3 2 7 7 C 1.37880 * 119.99930 * 299.99892 * 5 3 2 8 8 N 1.31508 * 120.00349 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47150 * 60.00267 * 9 7 5 11 11 H 1.48501 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47447 * 299.99892 * 9 7 5 13 13 N 1.46907 * 109.46956 * 65.16324 * 3 2 1 14 14 C 1.46903 * 110.99583 * 85.90073 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.83016 * 14 13 3 16 16 C 1.34430 * 125.46154 * 95.02059 * 15 14 13 17 17 C 1.46739 * 106.37520 * 179.97438 * 16 15 14 18 18 C 1.47113 * 127.02336 * 180.02562 * 17 16 15 19 19 O 1.21551 * 119.99794 * 179.97438 * 18 17 16 20 20 O 1.34781 * 119.99978 * 359.97438 * 18 17 16 21 21 C 1.45204 * 116.99917 * 180.02562 * 20 18 17 22 22 C 1.37844 * 105.95314 * 0.02562 * 17 16 15 23 23 C 1.50699 * 125.89647 * 179.97438 * 22 17 16 24 24 N 1.34631 * 108.20625 * 359.75576 * 22 17 16 25 25 C 1.46492 * 124.80789 * 180.25730 * 24 22 17 26 26 H 1.09003 * 109.47739 * 54.84516 * 1 2 3 27 27 H 1.09008 * 109.46907 * 294.84268 * 1 2 3 28 28 H 1.09001 * 109.47665 * 174.84807 * 1 2 3 29 29 H 1.08995 * 109.47532 * 120.00659 * 2 1 3 30 30 H 1.09006 * 109.46898 * 240.00300 * 2 1 3 31 31 H 0.96999 * 120.00601 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99929 * 321.94471 * 13 3 2 33 33 H 1.08994 * 109.46864 * 294.82181 * 14 13 3 34 34 H 1.08994 * 109.47486 * 54.82868 * 14 13 3 35 35 H 1.07998 * 126.80899 * 0.02562 * 16 15 14 36 36 H 1.09000 * 109.46766 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.46774 * 299.99642 * 21 20 18 38 38 H 1.08993 * 109.46917 * 60.00225 * 21 20 18 39 39 H 1.09000 * 109.47007 * 90.02458 * 23 22 17 40 40 H 1.08998 * 109.47170 * 210.02497 * 23 22 17 41 41 H 1.09001 * 109.47072 * 330.02637 * 23 22 17 42 42 H 1.08997 * 109.47296 * 270.16472 * 25 24 22 43 43 H 1.08997 * 109.47555 * 30.17491 * 25 24 22 44 44 H 1.09003 * 109.46980 * 150.16784 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1260 1.4439 -0.0925 5 6 1.4360 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4031 0.6921 -2.6676 9 14 0.9117 2.6808 -3.8908 10 1 1.4062 4.0811 -3.8909 11 1 1.3018 2.0186 -5.1614 12 1 -0.5679 2.6784 -3.7647 13 7 1.6547 2.0980 1.2570 14 6 2.6433 1.8365 2.3116 15 6 2.2831 2.6250 3.5443 16 6 1.5702 2.1618 4.5857 17 6 1.4700 3.2689 5.5435 18 6 0.7843 3.2549 6.8450 19 8 0.7815 4.2513 7.5412 20 8 0.1593 2.1372 7.2655 21 6 -0.4968 2.1960 8.5595 22 6 2.1496 4.3247 4.9747 23 6 2.3260 5.6923 5.5827 24 7 2.6327 3.9217 3.7845 25 6 3.4196 4.7580 2.8748 26 1 -0.3635 0.5917 -0.8402 27 1 -0.3633 0.4318 0.9326 28 1 -0.3634 -1.0235 -0.0923 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 2.5612 0.3874 -3.5748 32 1 0.7320 1.8103 1.5468 33 1 2.6482 0.7728 2.5492 34 1 3.6323 2.1359 1.9649 35 1 1.1545 1.1711 4.6958 36 1 -0.9588 1.2329 8.7766 37 1 0.2390 2.4274 9.3297 38 1 -1.2626 2.9714 8.5437 39 1 3.2359 5.7085 6.1828 40 1 2.4009 6.4358 4.7892 41 1 1.4690 5.9217 6.2160 42 1 2.7503 5.2832 2.1935 43 1 3.9928 5.4833 3.4523 44 1 4.1014 4.1295 2.3018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291033112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = -46.047290 kcal Electronic energy + Delta-G solvation = -23916.601493 eV Core-core repulsion = 20448.711383 eV Total energy + Delta-G solvation = -3467.890110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32916 -39.77691 -36.60166 -36.18697 -33.15053 -32.72852 -31.59401 -30.32474 -28.34695 -27.45134 -26.28127 -25.78555 -23.80243 -23.17750 -21.98146 -20.25367 -19.33464 -18.60914 -17.40674 -16.61249 -16.23642 -15.82878 -15.48876 -15.45557 -14.77241 -14.59690 -13.86906 -13.55248 -13.39192 -13.29217 -13.13753 -12.92667 -12.83103 -12.54559 -12.40182 -12.21333 -12.09569 -11.94542 -11.81686 -11.60680 -11.19683 -10.92455 -10.75633 -10.72025 -10.54893 -10.29217 -10.04323 -9.82861 -9.58780 -9.05724 -8.50232 -8.38407 -7.91626 -7.29521 -6.01648 -4.03569 1.59086 2.53389 2.69197 3.22533 3.30912 3.35789 3.38722 3.44049 4.40894 4.74569 4.87252 4.93255 5.07420 5.12125 5.14053 5.26674 5.29914 5.30941 5.44368 5.49795 5.51495 5.64032 5.69469 5.86783 5.93821 6.05178 6.10246 6.25363 6.34661 6.36326 6.54428 6.56902 6.88439 6.92018 7.19327 7.23848 7.27366 7.35989 7.50078 7.66786 7.83758 8.01963 8.22553 8.47376 8.55416 9.01695 9.60251 11.05115 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.003522 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.404185 B = 7949.107625 C = 8636.303311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.122 3.878 15 C 0.037 3.963 16 C -0.149 4.149 17 C -0.237 4.237 18 C 0.545 3.455 19 O -0.531 6.531 20 O -0.355 6.355 21 C 0.039 3.961 22 C 0.112 3.888 23 C -0.093 4.093 24 N -0.419 5.419 25 C 0.069 3.931 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.332 0.668 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 4.282 16.149 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.313 5.313 14 C -0.009 4.009 15 C -0.071 4.071 16 C -0.172 4.172 17 C -0.246 4.246 18 C 0.393 3.607 19 O -0.423 6.423 20 O -0.271 6.271 21 C -0.056 4.056 22 C -0.007 4.007 23 C -0.150 4.150 24 N -0.094 5.094 25 C -0.072 4.072 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.164 0.836 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.713 5.220 15.764 16.621 hybrid contribution -0.678 -0.563 -0.523 1.025 sum 0.034 4.656 15.241 15.936 Atomic orbital electron populations 1.21598 0.97599 0.98744 1.00846 1.22107 0.95123 1.00996 1.00318 1.19227 0.95873 0.88710 0.85280 0.95025 1.21000 1.30678 1.11555 0.89610 0.92135 1.24902 0.95508 0.95149 0.98708 1.69862 1.38875 1.23917 1.20854 0.86639 0.79630 0.79923 0.81651 1.20408 1.21509 1.20354 1.60864 1.03889 1.63385 1.03139 1.20412 0.97464 0.95271 0.87707 1.20459 1.03842 0.84351 0.98451 1.21767 1.03475 0.98767 0.93211 1.19171 1.13284 0.96425 0.95699 1.20165 0.75133 0.80221 0.85153 1.90763 1.60225 1.34552 1.56763 1.86597 1.64594 1.38776 1.37126 1.23181 0.96881 1.03234 0.82260 1.20442 0.97665 0.96003 0.86602 1.20550 1.04379 0.89621 1.00494 1.43460 1.40289 1.10909 1.14703 1.22121 0.96241 0.95371 0.93475 0.91276 0.95280 0.95739 0.96981 0.88901 0.93019 0.84935 0.93719 0.90986 0.83551 0.88406 0.92226 0.92156 0.90569 0.91465 0.88495 0.89736 0.90276 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.40 37.15 0.35 -2.37 16 2 C -0.15 -3.27 5.51 -26.74 -0.15 -3.42 16 3 C 0.22 5.04 2.33 -68.87 -0.16 4.88 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.49 -12.68 7.25 -34.44 -0.25 -12.93 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -24.48 11.38 55.43 0.63 -23.85 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.50 6.19 -109.22 -0.68 -14.18 16 14 C 0.12 2.05 5.61 -4.97 -0.03 2.02 16 15 C 0.04 0.59 6.40 -81.89 -0.52 0.06 16 16 C -0.15 -2.32 10.89 -37.49 -0.41 -2.73 16 17 C -0.24 -3.70 6.33 -103.01 -0.65 -4.36 16 18 C 0.54 8.40 7.95 34.33 0.27 8.68 16 19 O -0.53 -8.65 14.67 -19.31 -0.28 -8.93 16 20 O -0.35 -4.90 10.47 -40.71 -0.43 -5.33 16 21 C 0.04 0.38 10.57 101.05 1.07 1.44 16 22 C 0.11 1.59 6.93 -81.51 -0.56 1.03 16 23 C -0.09 -1.04 9.28 36.01 0.33 -0.71 16 24 N -0.42 -5.96 3.08 -115.01 -0.35 -6.31 16 25 C 0.07 0.79 10.39 59.84 0.62 1.41 16 26 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 27 H 0.03 0.54 6.63 -51.92 -0.34 0.20 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 30 H 0.09 2.36 6.23 -51.93 -0.32 2.03 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.33 6.58 6.69 -39.29 -0.26 6.32 16 33 H 0.04 0.74 7.53 -51.93 -0.39 0.35 16 34 H 0.07 1.20 6.87 -51.93 -0.36 0.84 16 35 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.62 7.60 -51.93 -0.39 0.23 16 41 H 0.10 1.19 6.51 -51.93 -0.34 0.85 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.67 7.51 -51.93 -0.39 0.28 16 44 H 0.09 1.06 6.98 -51.93 -0.36 0.70 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -29.47 358.39 -7.73 -37.19 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.81 Total: 5.77 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.18 Total: -5.55 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.40 Total: -44.34 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.71 Total: -14.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.47 -7.73 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291033112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.852 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds