Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47185 * 2 1 4 4 H 1.09001 * 109.47473 * 185.16166 * 3 2 1 5 5 C 1.50697 * 109.47340 * 305.16360 * 3 2 1 6 6 H 1.08002 * 120.00153 * 120.00224 * 5 3 2 7 7 C 1.37880 * 119.99930 * 299.99892 * 5 3 2 8 8 N 1.31508 * 120.00349 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47150 * 60.00267 * 9 7 5 11 11 H 1.48501 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47447 * 299.99892 * 9 7 5 13 13 N 1.46907 * 109.46956 * 65.16324 * 3 2 1 14 14 C 1.46903 * 110.99583 * 85.90073 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.83016 * 14 13 3 16 16 C 1.34430 * 125.46154 * 95.02059 * 15 14 13 17 17 C 1.46739 * 106.37520 * 179.97438 * 16 15 14 18 18 C 1.47113 * 127.02336 * 180.02562 * 17 16 15 19 19 O 1.21551 * 119.99794 * 179.97438 * 18 17 16 20 20 O 1.34781 * 119.99978 * 359.97438 * 18 17 16 21 21 C 1.45204 * 116.99917 * 180.02562 * 20 18 17 22 22 C 1.37844 * 105.95314 * 0.02562 * 17 16 15 23 23 C 1.50699 * 125.89647 * 179.97438 * 22 17 16 24 24 N 1.34631 * 108.20625 * 359.75576 * 22 17 16 25 25 C 1.46492 * 124.80789 * 180.25730 * 24 22 17 26 26 H 1.09003 * 109.47739 * 54.84516 * 1 2 3 27 27 H 1.09008 * 109.46907 * 294.84268 * 1 2 3 28 28 H 1.09001 * 109.47665 * 174.84807 * 1 2 3 29 29 H 1.08995 * 109.47532 * 120.00659 * 2 1 3 30 30 H 1.09006 * 109.46898 * 240.00300 * 2 1 3 31 31 H 0.96999 * 120.00601 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99929 * 321.94471 * 13 3 2 33 33 H 1.08994 * 109.46864 * 294.82181 * 14 13 3 34 34 H 1.08994 * 109.47486 * 54.82868 * 14 13 3 35 35 H 1.07998 * 126.80899 * 0.02562 * 16 15 14 36 36 H 1.09000 * 109.46766 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.46774 * 299.99642 * 21 20 18 38 38 H 1.08993 * 109.46917 * 60.00225 * 21 20 18 39 39 H 1.09000 * 109.47007 * 90.02458 * 23 22 17 40 40 H 1.08998 * 109.47170 * 210.02497 * 23 22 17 41 41 H 1.09001 * 109.47072 * 330.02637 * 23 22 17 42 42 H 1.08997 * 109.47296 * 270.16472 * 25 24 22 43 43 H 1.08997 * 109.47555 * 30.17491 * 25 24 22 44 44 H 1.09003 * 109.46980 * 150.16784 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1260 1.4439 -0.0925 5 6 1.4360 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4031 0.6921 -2.6676 9 14 0.9117 2.6808 -3.8908 10 1 1.4062 4.0811 -3.8909 11 1 1.3018 2.0186 -5.1614 12 1 -0.5679 2.6784 -3.7647 13 7 1.6547 2.0980 1.2570 14 6 2.6433 1.8365 2.3116 15 6 2.2831 2.6250 3.5443 16 6 1.5702 2.1618 4.5857 17 6 1.4700 3.2689 5.5435 18 6 0.7843 3.2549 6.8450 19 8 0.7815 4.2513 7.5412 20 8 0.1593 2.1372 7.2655 21 6 -0.4968 2.1960 8.5595 22 6 2.1496 4.3247 4.9747 23 6 2.3260 5.6923 5.5827 24 7 2.6327 3.9217 3.7845 25 6 3.4196 4.7580 2.8748 26 1 -0.3635 0.5917 -0.8402 27 1 -0.3633 0.4318 0.9326 28 1 -0.3634 -1.0235 -0.0923 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 2.5612 0.3874 -3.5748 32 1 0.7320 1.8103 1.5468 33 1 2.6482 0.7728 2.5492 34 1 3.6323 2.1359 1.9649 35 1 1.1545 1.1711 4.6958 36 1 -0.9588 1.2329 8.7766 37 1 0.2390 2.4274 9.3297 38 1 -1.2626 2.9714 8.5437 39 1 3.2359 5.7085 6.1828 40 1 2.4009 6.4358 4.7892 41 1 1.4690 5.9217 6.2160 42 1 2.7503 5.2832 2.1935 43 1 3.9928 5.4833 3.4523 44 1 4.1014 4.1295 2.3018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291033112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = -62.613427 kcal Electronic energy + Delta-G solvation = -23917.319855 eV Core-core repulsion = 20448.711383 eV Total energy + Delta-G solvation = -3468.608472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44991 -40.86602 -38.29231 -37.29666 -34.79499 -33.80969 -33.16255 -31.76206 -29.32323 -28.90370 -27.38334 -27.21818 -25.32021 -24.78738 -23.09566 -21.44692 -21.08525 -19.72559 -18.63811 -18.11076 -17.33494 -17.28696 -16.78289 -16.54823 -16.42902 -16.01077 -15.36279 -14.92942 -14.64176 -14.36348 -14.26967 -14.25539 -14.16925 -13.82923 -13.67361 -13.57999 -13.20758 -13.05421 -12.91909 -12.79006 -12.74544 -12.61731 -12.42399 -12.32305 -11.88399 -11.69764 -11.63921 -11.43332 -11.35294 -10.97024 -10.40211 -9.63201 -9.12683 -8.89631 -8.03043 -6.10914 0.47588 1.33394 1.45378 1.46401 1.53225 1.67914 2.20403 2.28577 2.47683 3.25997 3.64332 3.76155 3.94429 3.98330 4.09996 4.30823 4.36126 4.38978 4.39220 4.46487 4.58774 4.64081 4.65000 4.70457 4.73410 4.74326 4.77691 4.83341 4.90747 5.05611 5.14726 5.16908 5.37508 5.45870 5.49159 5.72821 5.76251 5.78280 5.86027 6.10817 6.26671 6.34744 6.69078 6.82078 6.91248 7.00640 7.56618 9.01619 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.003522 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.404185 B = 7949.107625 C = 8636.303311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 C 0.224 3.776 4 H 0.004 0.996 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.130 3.870 15 C 0.022 3.978 16 C -0.150 4.150 17 C -0.265 4.265 18 C 0.543 3.457 19 O -0.547 6.547 20 O -0.365 6.365 21 C 0.031 3.969 22 C 0.119 3.881 23 C -0.090 4.090 24 N -0.420 5.420 25 C 0.064 3.936 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.258 0.742 32 H 0.333 0.667 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 5.064 17.131 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.180 4.180 3 C 0.116 3.884 4 H 0.022 0.978 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.312 5.312 14 C 0.000 4.000 15 C -0.086 4.086 16 C -0.174 4.174 17 C -0.273 4.273 18 C 0.392 3.608 19 O -0.440 6.440 20 O -0.281 6.281 21 C -0.062 4.062 22 C -0.001 4.001 23 C -0.147 4.147 24 N -0.094 5.094 25 C -0.076 4.076 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.152 0.848 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.372 6.001 16.756 17.802 hybrid contribution -0.572 -0.808 -0.737 1.234 sum -0.200 5.193 16.019 16.841 Atomic orbital electron populations 1.21483 0.96214 0.99503 1.00725 1.21970 0.96288 1.00145 0.99568 1.18956 0.93903 0.89255 0.86272 0.97791 1.21220 1.30319 1.11322 0.90765 0.93114 1.25523 0.95959 0.95844 1.00856 1.69986 1.39912 1.25009 1.21049 0.85789 0.78960 0.78881 0.79016 1.20057 1.21457 1.20015 1.60728 1.04556 1.63006 1.02917 1.20301 0.96546 0.95815 0.87316 1.20226 1.05006 0.85325 0.98047 1.21916 1.03090 0.99179 0.93237 1.19420 1.14597 0.97047 0.96269 1.20192 0.75095 0.80402 0.85069 1.90743 1.60993 1.35057 1.57205 1.86576 1.64515 1.38120 1.38918 1.23507 0.96876 1.05166 0.80646 1.20940 0.96201 0.96850 0.86157 1.20620 1.04604 0.88361 1.01095 1.43633 1.40191 1.10610 1.14997 1.22313 0.96059 0.95575 0.93630 0.93760 0.93382 0.94080 0.95306 0.91965 0.93244 0.84806 0.93347 0.91083 0.83054 0.85350 0.91827 0.92028 0.88937 0.89162 0.89579 0.90220 0.86855 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.40 71.98 0.68 -4.28 16 2 C -0.14 -6.26 5.51 30.59 0.17 -6.09 16 3 C 0.22 10.51 2.33 44.16 0.10 10.61 16 4 H 0.00 0.22 7.70 -2.39 -0.02 0.20 16 5 C -0.50 -25.91 7.25 25.60 0.19 -25.73 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 7 C 0.02 0.88 5.28 84.66 0.45 1.32 16 8 N -0.92 -50.88 11.38 21.45 0.24 -50.63 16 9 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 N -0.68 -26.70 6.19 -499.46 -3.09 -29.80 16 14 C 0.13 4.30 5.61 85.56 0.48 4.78 16 15 C 0.02 0.68 6.40 40.97 0.26 0.95 16 16 C -0.15 -4.57 10.89 23.62 0.26 -4.31 16 17 C -0.27 -8.03 6.33 -18.82 -0.12 -8.14 16 18 C 0.54 16.33 7.95 70.15 0.56 16.89 16 19 O -0.55 -17.34 14.67 19.67 0.29 -17.05 16 20 O -0.36 -9.72 10.47 -56.93 -0.60 -10.32 16 21 C 0.03 0.56 10.57 113.37 1.20 1.76 16 22 C 0.12 3.19 6.93 42.04 0.29 3.48 16 23 C -0.09 -1.79 9.28 71.24 0.66 -1.13 16 24 N -0.42 -11.31 3.08 -517.77 -1.60 -12.90 16 25 C 0.06 1.36 10.39 127.77 1.33 2.68 16 26 H 0.04 2.01 6.85 -2.39 -0.02 1.99 16 27 H 0.05 1.74 6.63 -2.38 -0.02 1.73 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.16 7.50 -2.39 -0.02 1.14 16 30 H 0.06 3.19 6.23 -2.38 -0.01 3.18 16 31 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.33 12.91 6.69 -89.70 -0.60 12.31 16 33 H 0.05 1.57 7.53 -2.39 -0.02 1.55 16 34 H 0.07 2.35 6.87 -2.39 -0.02 2.33 16 35 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.38 7.60 -2.39 -0.02 1.36 16 41 H 0.09 1.97 6.51 -2.39 -0.02 1.96 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.11 1.57 7.51 -2.39 -0.02 1.56 16 44 H 0.09 1.93 6.98 -2.39 -0.02 1.91 16 Total: -1.00 -62.96 358.39 4.17 -58.79 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.40 Total: 24.45 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 6.50 Total: -7.22 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -4.45 Total: -93.33 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.31 Total: -27.37 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -62.96 4.17 -58.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291033112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.828 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds