Wall clock time and date at job start Tue Mar 31 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47465 * 2 1 4 4 N 1.46501 * 109.47441 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99850 * 266.37329 * 4 3 2 6 6 H 1.08006 * 119.99783 * 145.92214 * 5 4 3 7 7 C 1.38807 * 120.00343 * 325.92241 * 5 4 3 8 8 N 1.31613 * 119.99831 * 337.74515 * 7 5 4 9 9 Si 1.86803 * 120.00247 * 157.74775 * 7 5 4 10 10 H 1.48504 * 109.46943 * 89.99712 * 9 7 5 11 11 H 1.48498 * 109.47315 * 209.99874 * 9 7 5 12 12 H 1.48507 * 109.47012 * 330.00153 * 9 7 5 13 13 C 1.46494 * 119.99666 * 86.37463 * 4 3 2 14 14 C 1.50702 * 109.47550 * 90.00270 * 13 4 3 15 15 C 1.34431 * 125.45834 * 95.01887 * 14 13 4 16 16 C 1.46744 * 106.37541 * 179.97438 * 15 14 13 17 17 C 1.47103 * 127.02554 * 180.02562 * 16 15 14 18 18 O 1.21550 * 120.00016 * 179.97438 * 17 16 15 19 19 O 1.34784 * 120.00160 * 359.96899 * 17 16 15 20 20 C 1.45203 * 116.99955 * 179.97438 * 19 17 16 21 21 C 1.37844 * 105.94988 * 359.97438 * 16 15 14 22 22 C 1.50707 * 125.89899 * 179.97438 * 21 16 15 23 23 N 1.34628 * 108.20681 * 359.75735 * 21 16 15 24 24 C 1.46509 * 124.81061 * 180.25520 * 23 21 16 25 25 H 1.09003 * 109.46676 * 60.00160 * 1 2 3 26 26 H 1.09003 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47481 * 300.00212 * 1 2 3 28 28 H 1.09000 * 109.47481 * 239.99788 * 2 1 3 29 29 H 1.09009 * 109.47105 * 119.99788 * 2 1 3 30 30 H 1.09000 * 109.46944 * 59.99460 * 3 2 1 31 31 H 1.08995 * 109.46964 * 299.99940 * 3 2 1 32 32 H 0.97001 * 120.00152 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47275 * 209.99855 * 13 4 3 34 34 H 1.09003 * 109.47664 * 329.99773 * 13 4 3 35 35 H 1.07995 * 126.81371 * 0.02562 * 15 14 13 36 36 H 1.09001 * 109.46736 * 60.00762 * 20 19 17 37 37 H 1.09004 * 109.46939 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.47110 * 300.00395 * 20 19 17 39 39 H 1.08998 * 109.46612 * 90.02291 * 22 21 16 40 40 H 1.08994 * 109.46870 * 210.02571 * 22 21 16 41 41 H 1.08995 * 109.46470 * 330.02583 * 22 21 16 42 42 H 1.09001 * 109.46926 * 270.17636 * 24 23 21 43 43 H 1.08995 * 109.46819 * 30.17167 * 24 23 21 44 44 H 1.08994 * 109.47079 * 150.17620 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5176 1.1844 6 1 5.1301 0.9997 1.2982 7 6 3.6735 2.2595 2.2382 8 7 2.8037 3.2190 2.0038 9 14 4.2141 1.8961 3.9890 10 1 5.4061 2.7179 4.3196 11 1 3.1104 2.2252 4.9263 12 1 4.5559 0.4562 4.1127 13 6 4.2380 1.3620 -1.2652 14 6 4.4895 2.7524 -1.7894 15 6 5.6093 3.4695 -1.5920 16 6 5.4073 4.7498 -2.2803 17 6 6.3527 5.8743 -2.3546 18 8 6.0518 6.8820 -2.9639 19 8 7.5527 5.7873 -1.7469 20 6 8.4349 6.9348 -1.8624 21 6 4.1512 4.6828 -2.8439 22 6 3.4889 5.7647 -3.6576 23 7 3.6199 3.4822 -2.5460 24 6 2.2942 3.0256 -2.9708 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 2.4430 3.7372 2.7402 33 1 5.1904 0.8575 -1.1023 34 1 3.6492 0.8010 -1.9911 35 1 6.4842 3.1638 -1.0377 36 1 7.9505 7.8103 -1.4301 37 1 9.3645 6.7334 -1.3300 38 1 8.6520 7.1217 -2.9140 39 1 3.7346 5.6290 -4.7108 40 1 2.4084 5.7081 -3.5262 41 1 3.8449 6.7394 -3.3240 42 1 1.5550 3.3089 -2.2214 43 1 2.0395 3.4870 -3.9248 44 1 2.3017 1.9413 -3.0820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291268355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:13 Heat of formation + Delta-G solvation = -26.600561 kcal Electronic energy + Delta-G solvation = -24694.922174 eV Core-core repulsion = 21227.875337 eV Total energy + Delta-G solvation = -3467.046837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84962 -39.43095 -36.20265 -35.82841 -32.71365 -32.28457 -31.99095 -30.47421 -28.08986 -27.25272 -26.04079 -25.54872 -24.36818 -22.23257 -21.53095 -20.34723 -19.54206 -18.18457 -17.10141 -16.62524 -15.91228 -15.87556 -15.30570 -15.15522 -14.65141 -14.16322 -13.82421 -13.53545 -13.24081 -13.08673 -12.90833 -12.85449 -12.75260 -12.54809 -12.13296 -11.94379 -11.80783 -11.57330 -11.54633 -11.35396 -10.96198 -10.86222 -10.81192 -10.69951 -10.42112 -10.39197 -10.05198 -9.95541 -9.85161 -9.53394 -8.50155 -8.00811 -7.37446 -6.66274 -5.80971 -3.33926 1.98510 3.01680 3.13397 3.36651 3.44244 3.46809 3.61320 3.89815 4.49327 5.07390 5.13488 5.29193 5.32381 5.38495 5.40621 5.43224 5.47887 5.52692 5.67878 5.70653 5.77840 5.81995 5.82983 5.90259 5.97393 6.14976 6.23127 6.24327 6.42656 6.50838 6.55721 6.59830 6.71971 6.79155 6.82942 6.98648 7.19873 7.46918 7.69927 7.77371 7.79871 7.87219 8.37682 8.46988 9.14983 9.77116 10.32226 11.20085 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.005644 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.788013 B = 4960.156465 C = 6371.839682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.140 3.860 4 N -0.572 5.572 5 C -0.257 4.257 6 H 0.065 0.935 7 C 0.014 3.986 8 N -0.882 5.882 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.202 3.798 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.236 4.236 17 C 0.546 3.454 18 O -0.538 6.538 19 O -0.353 6.353 20 C 0.039 3.961 21 C 0.100 3.900 22 C -0.088 4.088 23 N -0.424 5.424 24 C 0.071 3.929 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.020 0.980 32 H 0.253 0.747 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 0.374 -10.118 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.014 3.986 4 N -0.291 5.291 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.187 4.187 8 N -0.524 5.524 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.203 1.203 13 C 0.074 3.926 14 C -0.083 4.083 15 C -0.164 4.164 16 C -0.245 4.245 17 C 0.395 3.605 18 O -0.431 6.431 19 O -0.269 6.269 20 C -0.055 4.055 21 C -0.018 4.018 22 C -0.146 4.146 23 N -0.099 5.099 24 C -0.071 4.071 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.159 0.841 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.228 0.616 -10.223 10.244 hybrid contribution 0.270 0.274 1.079 1.145 sum 0.498 0.890 -9.144 9.201 Atomic orbital electron populations 1.21694 0.97524 1.00002 1.01040 1.22104 0.93646 1.01635 1.00707 1.21136 0.83279 0.92215 1.01977 1.44062 1.00969 1.83767 1.00252 1.19047 1.06314 1.24542 0.88759 0.91771 1.25094 0.99624 0.94830 0.99131 1.69989 1.32977 1.18860 1.30597 0.86418 0.77873 0.78304 0.84924 1.21225 1.21618 1.20315 1.19702 0.97214 0.87248 0.88390 1.21922 0.89496 0.99163 0.97684 1.21606 0.99072 0.92320 1.03432 1.19180 0.94964 0.96143 1.14222 1.20254 0.79843 0.85864 0.74493 1.90728 1.77075 1.32494 1.42777 1.86623 1.27338 1.42920 1.70067 1.23138 0.92653 0.87662 1.02067 1.20274 0.92956 0.87717 1.00882 1.20470 0.99103 0.96756 0.98234 1.43381 1.14219 1.12265 1.40073 1.22084 0.82896 1.01569 1.00558 0.93782 0.94081 0.93059 0.94213 0.92320 0.88306 0.96180 0.93659 0.91157 0.93973 0.84052 0.92321 0.88605 0.92438 0.91087 0.91971 0.88818 0.90312 0.90585 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.14 3.02 5.26 -4.04 -0.02 3.00 16 4 N -0.57 -13.19 2.43 -174.61 -0.43 -13.62 16 5 C -0.26 -6.69 9.49 -15.06 -0.14 -6.83 16 6 H 0.06 1.67 7.92 -52.48 -0.42 1.25 16 7 C 0.01 0.37 4.93 -17.43 -0.09 0.28 16 8 N -0.88 -24.84 11.32 55.49 0.63 -24.21 16 9 Si 0.90 21.30 29.61 -169.99 -5.03 16.26 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.20 3.99 5.78 -5.20 -0.03 3.96 16 14 C 0.03 0.56 6.42 -81.89 -0.53 0.03 16 15 C -0.14 -2.95 10.89 -37.49 -0.41 -3.36 16 16 C -0.24 -4.80 6.33 -103.01 -0.65 -5.45 16 17 C 0.55 10.72 7.95 34.33 0.27 10.99 16 18 O -0.54 -10.75 14.67 -19.30 -0.28 -11.03 16 19 O -0.35 -6.32 10.47 -40.72 -0.43 -6.74 16 20 C 0.04 0.51 10.57 101.05 1.07 1.58 16 21 C 0.10 1.84 6.93 -81.51 -0.56 1.28 16 22 C -0.09 -1.31 9.28 36.01 0.33 -0.97 16 23 N -0.42 -7.64 3.08 -114.99 -0.35 -8.00 16 24 C 0.07 0.99 9.08 59.85 0.54 1.53 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.10 2.51 5.33 -51.93 -0.28 2.24 16 31 H 0.02 0.40 5.22 -51.93 -0.27 0.13 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 34 H 0.04 0.73 7.01 -51.93 -0.36 0.37 16 35 H 0.14 2.91 8.06 -52.49 -0.42 2.49 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.79 7.60 -51.93 -0.39 0.40 16 41 H 0.09 1.51 6.51 -51.93 -0.34 1.17 16 42 H 0.08 1.18 6.94 -51.93 -0.36 0.82 16 43 H 0.08 0.82 7.51 -51.93 -0.39 0.43 16 44 H 0.08 1.09 6.92 -51.93 -0.36 0.73 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -31.23 360.63 -7.42 -38.65 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.95 Total: 1.86 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.01 Total: 1.39 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.15 Total: -45.83 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.71 Total: -17.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.23 -7.42 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291268355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.053 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds