Wall clock time and date at job start Tue Mar 31 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50691 * 120.00303 * 2 1 4 4 N 1.46500 * 109.47255 * 125.55781 * 3 2 1 5 5 C 1.46507 * 119.99896 * 274.43544 * 4 3 2 6 6 C 1.50701 * 109.47408 * 270.89120 * 5 4 3 7 7 H 1.08002 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00263 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99472 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47360 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47343 * 119.99797 * 10 8 6 13 13 H 1.48505 * 109.46924 * 239.99745 * 10 8 6 14 14 C 1.34774 * 120.00245 * 94.44017 * 4 3 2 15 15 O 1.21286 * 119.99752 * 5.92182 * 14 4 3 16 16 C 1.50701 * 120.00335 * 185.92410 * 14 4 3 17 17 H 1.08998 * 109.46735 * 37.70857 * 16 14 4 18 18 C 1.52992 * 109.47030 * 277.70942 * 16 14 4 19 19 C 1.53000 * 109.46972 * 174.24952 * 18 16 14 20 20 N 1.46496 * 109.47020 * 157.70910 * 16 14 4 21 21 C 1.46764 * 124.35088 * 239.99883 * 20 16 14 22 22 C 1.54479 * 105.47501 * 197.01729 * 21 20 16 23 23 C 1.54621 * 101.76396 * 334.58714 * 22 21 20 24 24 C 1.34421 * 124.35241 * 59.70156 * 20 16 14 25 25 O 1.21286 * 124.93647 * 359.56588 * 24 20 16 26 26 H 1.08000 * 120.00240 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99885 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47347 * 5.55914 * 3 2 1 30 30 H 1.09002 * 109.47729 * 245.56547 * 3 2 1 31 31 H 1.08990 * 109.47002 * 30.89237 * 5 4 3 32 32 H 1.09004 * 109.46697 * 150.89614 * 5 4 3 33 33 H 0.97004 * 119.99136 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47613 * 294.24822 * 18 16 14 35 35 H 1.09009 * 109.47370 * 54.25146 * 18 16 14 36 36 H 1.09004 * 109.46945 * 299.99660 * 19 18 16 37 37 H 1.08998 * 109.47354 * 59.99970 * 19 18 16 38 38 H 1.09006 * 109.46828 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.24536 * 316.02055 * 21 20 16 40 40 H 1.09007 * 110.24709 * 78.01936 * 21 20 16 41 41 H 1.09003 * 110.96887 * 92.70498 * 22 21 20 42 42 H 1.09004 * 110.97120 * 216.46302 * 22 21 20 43 43 H 1.08997 * 110.48703 * 143.47682 * 23 22 21 44 44 H 1.09000 * 110.48618 * 265.97914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0033 1.3263 1.1236 5 6 2.5522 1.7619 2.4477 6 6 2.7298 3.2531 2.5735 7 1 3.1375 3.8198 1.7494 8 6 2.3718 3.8940 3.7406 9 7 1.8749 3.2040 4.7438 10 14 2.5913 5.7425 3.8962 11 1 3.1647 6.2807 2.6366 12 1 1.2735 6.3777 4.1517 13 1 3.5106 6.0386 5.0242 14 6 4.2829 0.9452 0.9394 15 8 4.6843 0.6878 -0.1758 16 6 5.2148 0.8389 2.1188 17 1 4.6709 0.4449 2.9773 18 6 5.7683 2.2244 2.4579 19 6 6.5997 2.1417 3.7397 20 7 6.3218 -0.0614 1.7869 21 6 6.6300 -1.2982 2.5145 22 6 8.0767 -1.6625 2.1138 23 6 8.2024 -0.9802 0.7319 24 6 7.1823 0.1361 0.7734 25 8 7.1475 1.0743 0.0055 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3595 2.1311 0.0996 30 1 2.6134 1.4072 -0.9356 31 1 1.4995 1.5094 2.5741 32 1 3.1411 1.2599 3.2155 33 1 1.6227 3.6550 5.5648 34 1 6.3968 2.5749 1.6392 35 1 4.9419 2.9198 2.6050 36 1 5.9711 1.7912 4.5584 37 1 7.4260 1.4463 3.5926 38 1 6.9936 3.1289 3.9814 39 1 6.5676 -1.1289 3.5895 40 1 5.9448 -2.0919 2.2164 41 1 8.7940 -1.2461 2.8211 42 1 8.1976 -2.7424 2.0281 43 1 9.2063 -0.5785 0.5947 44 1 7.9623 -1.6846 -0.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293738696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:41 Heat of formation + Delta-G solvation = -47.156183 kcal Electronic energy + Delta-G solvation = -25437.927099 eV Core-core repulsion = 21969.988904 eV Total energy + Delta-G solvation = -3467.938196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42105 -38.69117 -35.93218 -35.41480 -34.50143 -33.22667 -32.12236 -30.66097 -27.71001 -27.37604 -27.10277 -24.88837 -22.93011 -21.82386 -21.58944 -20.14052 -19.18512 -17.91720 -16.85699 -16.65440 -16.23656 -15.77634 -15.30891 -14.97142 -14.48624 -14.32005 -14.19535 -13.74912 -13.41155 -12.98853 -12.89386 -12.81041 -12.63347 -12.40099 -12.31351 -12.04749 -11.55211 -11.43991 -11.36923 -11.26104 -11.01951 -10.95833 -10.86237 -10.83428 -10.59898 -10.38191 -10.11519 -9.73519 -9.30331 -9.12125 -8.94315 -8.59867 -8.12285 -7.70243 -6.22794 -4.28598 2.55915 3.09707 3.19602 3.24232 3.29033 3.33728 3.48957 4.15125 4.31569 4.55645 4.57075 4.83730 5.09358 5.16871 5.26706 5.39029 5.48064 5.53332 5.55748 5.57151 5.65723 5.70435 5.83080 5.88825 5.97514 5.99323 6.10308 6.22426 6.27326 6.39017 6.53039 6.62214 6.73286 6.92379 6.96143 7.03061 7.10167 7.16975 7.55483 7.61092 7.73474 8.01909 8.33887 8.68914 8.77856 9.07198 9.38101 10.83342 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.006493 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.416893 B = 4311.451082 C = 5633.893337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.143 3.857 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.891 3.109 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.505 3.495 15 O -0.545 6.545 16 C 0.154 3.846 17 H 0.108 0.892 18 C -0.147 4.147 19 C -0.137 4.137 20 N -0.609 5.609 21 C 0.103 3.897 22 C -0.129 4.129 23 C -0.156 4.156 24 C 0.520 3.480 25 O -0.505 6.505 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -9.866 -0.885 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.326 5.326 5 C 0.117 3.883 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.718 3.282 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.291 3.709 15 O -0.423 6.423 16 C 0.048 3.952 17 H 0.126 0.874 18 C -0.185 4.185 19 C -0.195 4.195 20 N -0.345 5.345 21 C -0.020 4.020 22 C -0.167 4.167 23 C -0.196 4.196 24 C 0.307 3.693 25 O -0.379 6.379 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.863 -9.409 -1.674 11.766 hybrid contribution -0.173 0.868 0.426 0.982 sum 6.690 -8.541 -1.249 10.921 Atomic orbital electron populations 1.23754 0.95748 1.01531 1.01950 1.23366 0.96071 0.99200 0.98686 1.20384 0.92046 0.94558 0.91055 1.48164 1.08244 1.63926 1.12247 1.19464 0.96403 0.95035 0.77413 1.21498 1.43006 0.92557 1.00289 0.91787 1.24912 0.94600 0.98472 0.95523 1.69930 1.42061 1.35901 1.04667 0.86536 0.78024 0.85187 0.78428 1.19495 1.20820 1.20704 1.20709 0.82665 0.77183 0.90352 1.90657 1.75629 1.50874 1.25115 1.20865 0.86103 0.92110 0.96084 0.87435 1.22110 1.02775 0.95604 0.98027 1.21629 0.99250 1.00982 0.97599 1.48099 1.29994 1.23764 1.32607 1.22041 0.96115 0.86588 0.97276 1.22550 0.96254 1.01381 0.96512 1.22318 1.00245 0.98236 0.98808 1.20593 0.82244 0.86613 0.79876 1.90713 1.72882 1.33188 1.41106 0.88960 0.88404 0.88132 0.90043 0.89919 0.94532 0.94524 0.92541 0.91200 0.86101 0.92582 0.93908 0.92957 0.90395 0.91607 0.90151 0.89584 0.88658 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 14.32 29.01 0.42 -2.41 16 2 C -0.15 -2.60 9.84 -36.03 -0.35 -2.95 16 3 C 0.14 2.76 5.94 -5.20 -0.03 2.73 16 4 N -0.59 -12.73 2.44 -176.43 -0.43 -13.16 16 5 C 0.24 5.46 4.86 -5.19 -0.03 5.43 16 6 C -0.54 -13.42 6.84 -34.44 -0.24 -13.65 16 7 H 0.06 1.68 7.75 -52.49 -0.41 1.27 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 10 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.50 11.05 6.82 -10.99 -0.07 10.97 16 15 O -0.54 -13.32 13.49 -16.38 -0.22 -13.54 16 16 C 0.15 2.93 1.88 -69.09 -0.13 2.80 16 17 H 0.11 1.96 6.31 -51.93 -0.33 1.64 16 18 C -0.15 -2.90 5.27 -26.73 -0.14 -3.04 16 19 C -0.14 -2.25 9.81 37.16 0.36 -1.89 16 20 N -0.61 -10.06 2.26 -166.17 -0.37 -10.44 16 21 C 0.10 1.19 7.30 -3.12 -0.02 1.17 16 22 C -0.13 -1.16 7.18 -25.10 -0.18 -1.34 16 23 C -0.16 -1.87 6.86 -26.75 -0.18 -2.05 16 24 C 0.52 9.31 6.77 -10.86 -0.07 9.24 16 25 O -0.51 -11.50 14.60 -16.38 -0.24 -11.73 16 26 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 28 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.08 1.55 7.76 -51.93 -0.40 1.15 16 30 H 0.08 1.66 7.23 -51.93 -0.38 1.29 16 31 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.04 0.86 5.84 -51.93 -0.30 0.55 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.07 1.51 6.65 -51.93 -0.35 1.17 16 35 H 0.12 2.69 4.94 -51.92 -0.26 2.44 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.63 7.78 -51.93 -0.40 0.23 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -31.41 355.81 -7.97 -39.38 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.02 Total: 5.06 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.77 Total: 6.65 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.07 Total: -46.33 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.46 Total: -25.27 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.41 -7.97 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293738696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.773 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds