Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50691 * 120.00303 * 2 1 4 4 N 1.46500 * 109.47255 * 125.55781 * 3 2 1 5 5 C 1.46507 * 119.99896 * 274.43544 * 4 3 2 6 6 C 1.50701 * 109.47408 * 270.89120 * 5 4 3 7 7 H 1.08002 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00263 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99472 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47360 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47343 * 119.99797 * 10 8 6 13 13 H 1.48505 * 109.46924 * 239.99745 * 10 8 6 14 14 C 1.34774 * 120.00245 * 94.44017 * 4 3 2 15 15 O 1.21286 * 119.99752 * 5.92182 * 14 4 3 16 16 C 1.50701 * 120.00335 * 185.92410 * 14 4 3 17 17 H 1.08998 * 109.46735 * 37.70857 * 16 14 4 18 18 C 1.52992 * 109.47030 * 277.70942 * 16 14 4 19 19 C 1.53000 * 109.46972 * 174.24952 * 18 16 14 20 20 N 1.46496 * 109.47020 * 157.70910 * 16 14 4 21 21 C 1.46764 * 124.35088 * 239.99883 * 20 16 14 22 22 C 1.54479 * 105.47501 * 197.01729 * 21 20 16 23 23 C 1.54621 * 101.76396 * 334.58714 * 22 21 20 24 24 C 1.34421 * 124.35241 * 59.70156 * 20 16 14 25 25 O 1.21286 * 124.93647 * 359.56588 * 24 20 16 26 26 H 1.08000 * 120.00240 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99885 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47347 * 5.55914 * 3 2 1 30 30 H 1.09002 * 109.47729 * 245.56547 * 3 2 1 31 31 H 1.08990 * 109.47002 * 30.89237 * 5 4 3 32 32 H 1.09004 * 109.46697 * 150.89614 * 5 4 3 33 33 H 0.97004 * 119.99136 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47613 * 294.24822 * 18 16 14 35 35 H 1.09009 * 109.47370 * 54.25146 * 18 16 14 36 36 H 1.09004 * 109.46945 * 299.99660 * 19 18 16 37 37 H 1.08998 * 109.47354 * 59.99970 * 19 18 16 38 38 H 1.09006 * 109.46828 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.24536 * 316.02055 * 21 20 16 40 40 H 1.09007 * 110.24709 * 78.01936 * 21 20 16 41 41 H 1.09003 * 110.96887 * 92.70498 * 22 21 20 42 42 H 1.09004 * 110.97120 * 216.46302 * 22 21 20 43 43 H 1.08997 * 110.48703 * 143.47682 * 23 22 21 44 44 H 1.09000 * 110.48618 * 265.97914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0033 1.3263 1.1236 5 6 2.5522 1.7619 2.4477 6 6 2.7298 3.2531 2.5735 7 1 3.1375 3.8198 1.7494 8 6 2.3718 3.8940 3.7406 9 7 1.8749 3.2040 4.7438 10 14 2.5913 5.7425 3.8962 11 1 3.1647 6.2807 2.6366 12 1 1.2735 6.3777 4.1517 13 1 3.5106 6.0386 5.0242 14 6 4.2829 0.9452 0.9394 15 8 4.6843 0.6878 -0.1758 16 6 5.2148 0.8389 2.1188 17 1 4.6709 0.4449 2.9773 18 6 5.7683 2.2244 2.4579 19 6 6.5997 2.1417 3.7397 20 7 6.3218 -0.0614 1.7869 21 6 6.6300 -1.2982 2.5145 22 6 8.0767 -1.6625 2.1138 23 6 8.2024 -0.9802 0.7319 24 6 7.1823 0.1361 0.7734 25 8 7.1475 1.0743 0.0055 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3595 2.1311 0.0996 30 1 2.6134 1.4072 -0.9356 31 1 1.4995 1.5094 2.5741 32 1 3.1411 1.2599 3.2155 33 1 1.6227 3.6550 5.5648 34 1 6.3968 2.5749 1.6392 35 1 4.9419 2.9198 2.6050 36 1 5.9711 1.7912 4.5584 37 1 7.4260 1.4463 3.5926 38 1 6.9936 3.1289 3.9814 39 1 6.5676 -1.1289 3.5895 40 1 5.9448 -2.0919 2.2164 41 1 8.7940 -1.2461 2.8211 42 1 8.1976 -2.7424 2.0281 43 1 9.2063 -0.5785 0.5947 44 1 7.9623 -1.6846 -0.0645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293738696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = -64.424781 kcal Electronic energy + Delta-G solvation = -25438.675922 eV Core-core repulsion = 21969.988904 eV Total energy + Delta-G solvation = -3468.687018 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82470 -40.24922 -37.31092 -37.11031 -35.94857 -34.90781 -33.81462 -31.87832 -29.44917 -28.74969 -28.34502 -26.41484 -24.82020 -23.15760 -22.63702 -21.55796 -20.59240 -19.48121 -18.50728 -18.30522 -17.83933 -17.05976 -16.78356 -16.45693 -16.23174 -15.84767 -15.61807 -15.14101 -14.58052 -14.49590 -14.36115 -14.20285 -14.11702 -13.77067 -13.63658 -13.38730 -13.27089 -13.03798 -12.83570 -12.72894 -12.61694 -12.36335 -12.27716 -12.19461 -12.05950 -11.81997 -11.72270 -11.62591 -10.89556 -10.63198 -10.47733 -10.31397 -9.57363 -9.45189 -8.20857 -6.31826 1.23769 1.37764 1.42843 1.51842 1.66370 1.80239 2.01869 2.39190 2.60221 3.09138 3.48726 3.65821 3.73746 3.96921 4.04313 4.06594 4.11505 4.16114 4.31456 4.46038 4.48671 4.59973 4.71235 4.73657 4.77147 4.84456 4.89156 4.90814 5.00624 5.11105 5.12626 5.18860 5.24713 5.27185 5.43664 5.56213 5.63497 5.68516 5.73940 5.92141 6.05776 6.35490 6.53650 6.79502 7.25021 7.37530 7.45015 8.84627 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.006493 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.416893 B = 4311.451082 C = 5633.893337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.596 5.596 5 C 0.255 3.745 6 C -0.539 4.539 7 H 0.044 0.956 8 C 0.035 3.965 9 N -0.909 5.909 10 Si 0.942 3.058 11 H -0.279 1.279 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.496 3.504 15 O -0.575 6.575 16 C 0.158 3.842 17 H 0.117 0.883 18 C -0.140 4.140 19 C -0.127 4.127 20 N -0.611 5.611 21 C 0.091 3.909 22 C -0.110 4.110 23 C -0.147 4.147 24 C 0.500 3.500 25 O -0.569 6.569 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.036 0.964 33 H 0.269 0.731 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -11.581 0.590 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.018 3.982 4 N -0.327 5.327 5 C 0.134 3.866 6 C -0.577 4.577 7 H 0.062 0.938 8 C -0.166 4.166 9 N -0.548 5.548 10 Si 0.768 3.232 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.198 1.198 14 C 0.284 3.716 15 O -0.455 6.455 16 C 0.052 3.948 17 H 0.134 0.866 18 C -0.179 4.179 19 C -0.184 4.184 20 N -0.345 5.345 21 C -0.030 4.030 22 C -0.148 4.148 23 C -0.187 4.187 24 C 0.289 3.711 25 O -0.447 6.447 26 H 0.140 0.860 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.410 -11.165 -0.166 13.402 hybrid contribution -0.426 1.399 -0.085 1.465 sum 6.984 -9.767 -0.251 12.010 Atomic orbital electron populations 1.24022 0.94850 1.03141 0.97989 1.23118 0.96763 0.97603 1.02279 1.20437 0.91721 0.96298 0.89715 1.48231 1.08730 1.63551 1.12207 1.19142 0.95381 0.93939 0.78127 1.21507 1.42869 0.93480 0.99837 0.93757 1.25423 0.94357 1.01607 0.95226 1.69981 1.42628 1.37159 1.05039 0.85745 0.78108 0.81297 0.78027 1.20418 1.20249 1.19842 1.21306 0.82922 0.76484 0.90910 1.90633 1.76057 1.52325 1.26521 1.20687 0.86627 0.92605 0.94916 0.86584 1.21940 1.01661 0.95419 0.98831 1.21550 0.99295 1.01924 0.95634 1.48298 1.28620 1.24720 1.32886 1.22459 0.98193 0.84483 0.97907 1.22611 0.94474 1.03293 0.94381 1.22344 0.98788 0.96272 1.01312 1.21753 0.83209 0.87092 0.79045 1.90668 1.74661 1.36038 1.43360 0.86030 0.87931 0.88238 0.90295 0.91571 0.95843 0.94614 0.92169 0.93935 0.89012 0.92022 0.91942 0.92494 0.88492 0.90790 0.88414 0.86047 0.87220 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 14.32 67.78 0.97 -3.54 16 2 C -0.18 -6.02 9.84 25.64 0.25 -5.76 16 3 C 0.14 5.67 5.94 85.63 0.51 6.18 16 4 N -0.60 -26.51 2.44 -830.50 -2.03 -28.53 16 5 C 0.25 12.00 4.86 85.63 0.42 12.41 16 6 C -0.54 -27.65 6.84 25.60 0.18 -27.48 16 7 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 8 C 0.04 1.81 5.46 84.65 0.46 2.27 16 9 N -0.91 -47.79 13.29 21.45 0.28 -47.50 16 10 Si 0.94 41.50 29.54 68.60 2.03 43.52 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.50 22.60 6.82 87.66 0.60 23.20 16 15 O -0.58 -29.49 13.49 17.93 0.24 -29.25 16 16 C 0.16 6.12 1.88 44.24 0.08 6.20 16 17 H 0.12 4.22 6.31 -2.39 -0.02 4.21 16 18 C -0.14 -5.68 5.27 30.59 0.16 -5.52 16 19 C -0.13 -4.05 9.81 71.98 0.71 -3.34 16 20 N -0.61 -19.78 2.26 -798.22 -1.80 -21.58 16 21 C 0.09 1.83 7.30 86.83 0.63 2.46 16 22 C -0.11 -1.51 7.18 31.65 0.23 -1.28 16 23 C -0.15 -3.19 6.86 30.58 0.21 -2.98 16 24 C 0.50 17.91 6.77 87.90 0.59 18.50 16 25 O -0.57 -27.06 14.60 17.93 0.26 -26.79 16 26 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.10 2.77 7.84 -2.91 -0.02 2.74 16 28 H 0.10 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.08 3.13 7.76 -2.39 -0.02 3.11 16 30 H 0.07 2.83 7.23 -2.39 -0.02 2.82 16 31 H 0.02 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.04 1.69 5.84 -2.39 -0.01 1.68 16 33 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 34 H 0.04 1.94 6.65 -2.39 -0.02 1.92 16 35 H 0.09 4.26 4.94 -2.38 -0.01 4.24 16 36 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.06 1.73 7.78 -2.39 -0.02 1.71 16 38 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.50 355.81 5.96 -65.54 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.97 Total: 23.28 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 6.00 Total: 21.32 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.54 Total: -97.62 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: 0.50 Total: -56.04 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -71.50 5.96 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293738696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.115 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds