Wall clock time and date at job start Tue Mar 31 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 N 1.46506 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99729 * 265.77864 * 4 3 2 6 6 H 1.07998 * 119.99729 * 146.20581 * 5 4 3 7 7 C 1.38808 * 120.00241 * 326.20504 * 5 4 3 8 8 N 1.31618 * 120.00022 * 337.69844 * 7 5 4 9 9 Si 1.86802 * 120.00020 * 157.70029 * 7 5 4 10 10 H 1.48504 * 109.47120 * 60.00062 * 9 7 5 11 11 H 1.48500 * 109.47125 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47103 * 299.99989 * 9 7 5 13 13 C 1.46501 * 119.99720 * 85.77745 * 4 3 2 14 14 C 1.50698 * 109.46853 * 90.00378 * 13 4 3 15 15 C 1.34431 * 125.46022 * 94.97194 * 14 13 4 16 16 C 1.46749 * 106.37362 * 180.02562 * 15 14 13 17 17 C 1.47108 * 127.02172 * 179.97438 * 16 15 14 18 18 O 1.21552 * 120.00131 * 180.02562 * 17 16 15 19 19 O 1.34790 * 119.99846 * 0.03527 * 17 16 15 20 20 C 1.45206 * 116.99695 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46993 * 179.97438 * 20 19 17 22 22 C 1.37841 * 105.94956 * 0.02562 * 16 15 14 23 23 C 1.50703 * 125.89146 * 180.02562 * 22 16 15 24 24 N 1.34619 * 108.20929 * 0.25773 * 22 16 15 25 25 H 0.97003 * 124.80941 * 179.71680 * 24 22 16 26 26 H 1.09002 * 109.46954 * 300.00531 * 1 2 3 27 27 H 1.08998 * 109.47010 * 59.99552 * 1 2 3 28 28 H 1.08994 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46870 * 240.00129 * 2 1 3 30 30 H 1.08996 * 109.46539 * 119.99629 * 2 1 3 31 31 H 1.08994 * 109.47234 * 60.00352 * 3 2 1 32 32 H 1.08998 * 109.47113 * 299.99997 * 3 2 1 33 33 H 0.96999 * 120.00262 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47200 * 329.99671 * 13 4 3 35 35 H 1.09005 * 109.46626 * 209.99892 * 13 4 3 36 36 H 1.08001 * 126.81280 * 0.02609 * 15 14 13 37 37 H 1.09003 * 109.47033 * 300.00239 * 20 19 17 38 38 H 1.09003 * 109.46930 * 60.00045 * 20 19 17 39 39 H 1.09000 * 109.47139 * 299.99919 * 21 20 19 40 40 H 1.08992 * 109.47467 * 60.00110 * 21 20 19 41 41 H 1.09002 * 109.47276 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47433 * 89.99765 * 23 22 16 43 43 H 1.09005 * 109.47154 * 329.99516 * 23 22 16 44 44 H 1.08998 * 109.47274 * 209.99901 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.5299 1.1836 6 1 5.1322 1.0169 1.3012 7 6 3.6706 2.2779 2.2316 8 7 2.7974 3.2325 1.9898 9 14 4.2122 1.9298 3.9852 10 1 5.6802 2.1241 4.0977 11 1 3.5179 2.8598 4.9116 12 1 3.8696 0.5291 4.3402 13 6 4.2380 1.3489 -1.2644 14 6 4.4895 2.7337 -1.8029 15 6 5.6089 3.4533 -1.6122 16 6 5.4065 4.7267 -2.3129 17 6 6.3511 5.8513 -2.3969 18 8 6.0496 6.8533 -3.0155 19 8 7.5510 5.7705 -1.7882 20 6 8.4324 6.9176 -1.9137 21 6 9.7367 6.6432 -1.1627 22 6 4.1501 4.6541 -2.8751 23 6 3.4879 5.7276 -3.6999 24 7 3.6147 3.4609 -2.5560 25 1 2.7329 3.1598 -2.8256 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 2.4347 3.7550 2.7222 34 1 3.6492 0.7804 -1.9843 35 1 5.1904 0.8460 -1.0960 36 1 6.4836 3.1536 -1.0540 37 1 8.6496 7.0954 -2.9670 38 1 7.9472 7.7967 -1.4894 39 1 9.5191 6.4657 -0.1095 40 1 10.2220 5.7641 -1.5865 41 1 10.3982 7.5044 -1.2565 42 1 3.7334 5.5810 -4.7517 43 1 3.8441 6.7058 -3.3766 44 1 2.4074 5.6725 -3.5680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294774949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:35 Heat of formation + Delta-G solvation = -41.954985 kcal Electronic energy + Delta-G solvation = -24123.789908 eV Core-core repulsion = 20656.077254 eV Total energy + Delta-G solvation = -3467.712655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71609 -39.43419 -36.24610 -35.96905 -32.61968 -31.97123 -31.69084 -30.47421 -30.37124 -27.41881 -25.60757 -24.86543 -23.43072 -22.12054 -21.63442 -20.29815 -19.52057 -19.18541 -17.19770 -16.66094 -16.15179 -15.88155 -15.20218 -14.92292 -14.41120 -14.14354 -13.84808 -13.53291 -13.33683 -13.21945 -12.96555 -12.74785 -12.69293 -12.56351 -12.14661 -12.04505 -11.72323 -11.58568 -11.46637 -11.35833 -11.01010 -10.93356 -10.80851 -10.72840 -10.43208 -10.24921 -10.07067 -9.97498 -9.86365 -9.59749 -8.52097 -8.23653 -7.41314 -6.69146 -5.82470 -3.35561 1.97643 3.04549 3.12528 3.37405 3.43065 3.44972 3.83376 3.87641 4.48217 5.03740 5.08783 5.21508 5.26901 5.32534 5.36572 5.48342 5.48936 5.69712 5.75981 5.78447 5.84964 5.85998 5.93899 5.95395 6.07193 6.14505 6.18373 6.22250 6.40843 6.49534 6.54267 6.56226 6.71597 6.78708 6.81418 6.97557 7.18540 7.44882 7.66962 7.69134 7.78409 8.03338 8.37333 8.45280 9.13076 9.75274 10.30051 11.18768 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004950 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.245877 B = 5654.847973 C = 7056.084588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.146 3.854 4 N -0.574 5.574 5 C -0.258 4.258 6 H 0.065 0.935 7 C 0.013 3.987 8 N -0.883 5.883 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.201 3.799 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.234 4.234 17 C 0.547 3.453 18 O -0.538 6.538 19 O -0.351 6.351 20 C 0.064 3.936 21 C -0.152 4.152 22 C 0.101 3.899 23 C -0.090 4.090 24 N -0.533 5.533 25 H 0.410 0.590 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.012 0.988 33 H 0.255 0.745 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 1.407 -9.314 9.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.020 3.980 4 N -0.292 5.292 5 C -0.388 4.388 6 H 0.083 0.917 7 C -0.187 4.187 8 N -0.525 5.525 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.073 3.927 14 C -0.084 4.084 15 C -0.164 4.164 16 C -0.243 4.243 17 C 0.396 3.604 18 O -0.431 6.431 19 O -0.268 6.268 20 C -0.010 4.010 21 C -0.209 4.209 22 C -0.018 4.018 23 C -0.148 4.148 24 N -0.128 5.128 25 H 0.247 0.753 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.097 1.739 -9.342 9.995 hybrid contribution -0.165 0.120 0.917 0.939 sum 2.933 1.859 -8.425 9.113 Atomic orbital electron populations 1.21695 0.97504 1.00020 1.01074 1.22097 0.93699 1.01514 1.00751 1.21018 0.83217 0.92202 1.01580 1.44092 1.00990 1.83671 1.00438 1.19031 1.06161 1.24588 0.89008 0.91698 1.25103 0.99613 0.94798 0.99203 1.69979 1.32779 1.18828 1.30911 0.86453 0.78473 0.77681 0.84717 1.20614 1.21710 1.20901 1.19741 0.97352 0.87340 0.88289 1.21968 0.89727 0.99119 0.97569 1.21615 0.99232 0.92289 1.03280 1.19221 0.95047 0.96307 1.13727 1.20220 0.79767 0.85810 0.74583 1.90731 1.77080 1.32841 1.42429 1.86622 1.27108 1.43273 1.69800 1.22893 0.89885 0.87441 1.00828 1.21787 0.95004 1.02629 1.01483 1.20310 0.93034 0.88158 1.00344 1.20493 0.99144 0.96925 0.98191 1.41536 1.16257 1.13260 1.41732 0.75349 0.93041 0.93762 0.94054 0.94143 0.92260 0.88122 0.97004 0.93543 0.93809 0.90994 0.84095 0.91732 0.91642 0.91370 0.91561 0.90678 0.90958 0.88761 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.62 6.26 -26.73 -0.17 -2.79 16 3 C 0.15 3.19 5.25 -4.04 -0.02 3.17 16 4 N -0.57 -13.22 2.44 -174.61 -0.43 -13.65 16 5 C -0.26 -6.70 9.49 -15.06 -0.14 -6.84 16 6 H 0.07 1.68 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.36 4.93 -17.43 -0.09 0.27 16 8 N -0.88 -24.86 11.32 55.49 0.63 -24.23 16 9 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.20 3.90 6.21 -5.19 -0.03 3.87 16 14 C 0.03 0.55 6.70 -81.89 -0.55 0.00 16 15 C -0.14 -2.89 10.89 -37.49 -0.41 -3.29 16 16 C -0.23 -4.65 6.33 -103.01 -0.65 -5.30 16 17 C 0.55 10.61 7.95 34.33 0.27 10.88 16 18 O -0.54 -10.64 14.67 -19.31 -0.28 -10.93 16 19 O -0.35 -6.25 10.12 -40.74 -0.41 -6.66 16 20 C 0.06 0.87 6.20 37.16 0.23 1.10 16 21 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 22 C 0.10 1.80 7.22 -81.51 -0.59 1.21 16 23 C -0.09 -1.29 9.90 36.01 0.36 -0.93 16 24 N -0.53 -9.24 5.89 -5.20 -0.03 -9.27 16 25 H 0.41 6.01 8.96 -40.82 -0.37 5.65 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 2.57 5.31 -51.93 -0.28 2.29 16 32 H 0.01 0.24 8.10 -51.93 -0.42 -0.18 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 34 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 36 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.49 6.51 -51.93 -0.34 1.15 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -30.61 369.88 -8.30 -38.92 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.28 Total: 5.82 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.04 Total: -1.81 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.17 Total: -47.15 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.70 Total: -17.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.61 -8.30 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294774949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds