Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 N 1.46506 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99729 * 265.77864 * 4 3 2 6 6 H 1.07998 * 119.99729 * 146.20581 * 5 4 3 7 7 C 1.38808 * 120.00241 * 326.20504 * 5 4 3 8 8 N 1.31618 * 120.00022 * 337.69844 * 7 5 4 9 9 Si 1.86802 * 120.00020 * 157.70029 * 7 5 4 10 10 H 1.48504 * 109.47120 * 60.00062 * 9 7 5 11 11 H 1.48500 * 109.47125 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47103 * 299.99989 * 9 7 5 13 13 C 1.46501 * 119.99720 * 85.77745 * 4 3 2 14 14 C 1.50698 * 109.46853 * 90.00378 * 13 4 3 15 15 C 1.34431 * 125.46022 * 94.97194 * 14 13 4 16 16 C 1.46749 * 106.37362 * 180.02562 * 15 14 13 17 17 C 1.47108 * 127.02172 * 179.97438 * 16 15 14 18 18 O 1.21552 * 120.00131 * 180.02562 * 17 16 15 19 19 O 1.34790 * 119.99846 * 0.03527 * 17 16 15 20 20 C 1.45206 * 116.99695 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46993 * 179.97438 * 20 19 17 22 22 C 1.37841 * 105.94956 * 0.02562 * 16 15 14 23 23 C 1.50703 * 125.89146 * 180.02562 * 22 16 15 24 24 N 1.34619 * 108.20929 * 0.25773 * 22 16 15 25 25 H 0.97003 * 124.80941 * 179.71680 * 24 22 16 26 26 H 1.09002 * 109.46954 * 300.00531 * 1 2 3 27 27 H 1.08998 * 109.47010 * 59.99552 * 1 2 3 28 28 H 1.08994 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46870 * 240.00129 * 2 1 3 30 30 H 1.08996 * 109.46539 * 119.99629 * 2 1 3 31 31 H 1.08994 * 109.47234 * 60.00352 * 3 2 1 32 32 H 1.08998 * 109.47113 * 299.99997 * 3 2 1 33 33 H 0.96999 * 120.00262 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47200 * 329.99671 * 13 4 3 35 35 H 1.09005 * 109.46626 * 209.99892 * 13 4 3 36 36 H 1.08001 * 126.81280 * 0.02609 * 15 14 13 37 37 H 1.09003 * 109.47033 * 300.00239 * 20 19 17 38 38 H 1.09003 * 109.46930 * 60.00045 * 20 19 17 39 39 H 1.09000 * 109.47139 * 299.99919 * 21 20 19 40 40 H 1.08992 * 109.47467 * 60.00110 * 21 20 19 41 41 H 1.09002 * 109.47276 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47433 * 89.99765 * 23 22 16 43 43 H 1.09005 * 109.47154 * 329.99516 * 23 22 16 44 44 H 1.08998 * 109.47274 * 209.99901 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.5299 1.1836 6 1 5.1322 1.0169 1.3012 7 6 3.6706 2.2779 2.2316 8 7 2.7974 3.2325 1.9898 9 14 4.2122 1.9298 3.9852 10 1 5.6802 2.1241 4.0977 11 1 3.5179 2.8598 4.9116 12 1 3.8696 0.5291 4.3402 13 6 4.2380 1.3489 -1.2644 14 6 4.4895 2.7337 -1.8029 15 6 5.6089 3.4533 -1.6122 16 6 5.4065 4.7267 -2.3129 17 6 6.3511 5.8513 -2.3969 18 8 6.0496 6.8533 -3.0155 19 8 7.5510 5.7705 -1.7882 20 6 8.4324 6.9176 -1.9137 21 6 9.7367 6.6432 -1.1627 22 6 4.1501 4.6541 -2.8751 23 6 3.4879 5.7276 -3.6999 24 7 3.6147 3.4609 -2.5560 25 1 2.7329 3.1598 -2.8256 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 2.4347 3.7550 2.7222 34 1 3.6492 0.7804 -1.9843 35 1 5.1904 0.8460 -1.0960 36 1 6.4836 3.1536 -1.0540 37 1 8.6496 7.0954 -2.9670 38 1 7.9472 7.7967 -1.4894 39 1 9.5191 6.4657 -0.1095 40 1 10.2220 5.7641 -1.5865 41 1 10.3982 7.5044 -1.2565 42 1 3.7334 5.5810 -4.7517 43 1 3.8441 6.7058 -3.3766 44 1 2.4074 5.6725 -3.5680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294774949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = -57.811382 kcal Electronic energy + Delta-G solvation = -24124.477493 eV Core-core repulsion = 20656.077254 eV Total energy + Delta-G solvation = -3468.400240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.17031 -40.84185 -37.91191 -37.41739 -34.16860 -33.71004 -32.82335 -32.00043 -31.74079 -28.90882 -27.37048 -26.33118 -24.75796 -23.58166 -23.00251 -21.88294 -21.06651 -20.61791 -18.84855 -18.31244 -17.44757 -17.39240 -16.66761 -16.58366 -16.03068 -15.71803 -15.38638 -14.91692 -14.78126 -14.60350 -14.36256 -14.24929 -13.96566 -13.62745 -13.46179 -13.29532 -13.26024 -13.00662 -12.85519 -12.67703 -12.61011 -12.54592 -12.39463 -12.27855 -12.08051 -11.80988 -11.66610 -11.46427 -11.37597 -11.26378 -10.48199 -9.73447 -8.93564 -8.56895 -7.81311 -5.36362 0.52798 1.46501 1.48089 1.52997 1.59345 1.80198 2.35826 2.46631 2.55213 3.28708 3.80642 3.91958 3.99294 4.03059 4.12699 4.24293 4.31297 4.35604 4.37582 4.50193 4.57222 4.67942 4.74092 4.74536 4.84744 4.88954 4.92935 4.97257 5.01645 5.10308 5.14521 5.15473 5.29871 5.34701 5.39981 5.57076 5.59857 5.72085 5.91803 5.94177 6.15711 6.48080 6.67859 6.93927 7.19521 7.87839 8.36555 9.15612 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004950 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.245877 B = 5654.847973 C = 7056.084588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.147 3.853 4 N -0.587 5.587 5 C -0.257 4.257 6 H 0.061 0.939 7 C -0.035 4.035 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.277 1.277 13 C 0.202 3.798 14 C 0.021 3.979 15 C -0.162 4.162 16 C -0.268 4.268 17 C 0.543 3.457 18 O -0.549 6.549 19 O -0.365 6.365 20 C 0.054 3.946 21 C -0.145 4.145 22 C 0.113 3.887 23 C -0.086 4.086 24 N -0.524 5.524 25 H 0.425 0.575 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 0.915 -10.677 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.021 3.979 4 N -0.306 5.306 5 C -0.387 4.387 6 H 0.079 0.921 7 C -0.232 4.232 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.203 1.203 13 C 0.075 3.925 14 C -0.091 4.091 15 C -0.186 4.186 16 C -0.277 4.277 17 C 0.393 3.607 18 O -0.443 6.443 19 O -0.282 6.282 20 C -0.020 4.020 21 C -0.202 4.202 22 C -0.007 4.007 23 C -0.143 4.143 24 N -0.120 5.120 25 H 0.264 0.736 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.756 1.217 -10.719 11.134 hybrid contribution 0.004 0.279 1.247 1.278 sum 2.760 1.496 -9.472 9.978 Atomic orbital electron populations 1.21641 0.95181 1.01605 1.01265 1.21934 0.95691 0.98957 1.00440 1.20946 0.82693 0.93969 1.00271 1.44240 1.01604 1.83851 1.00888 1.19236 1.05783 1.23316 0.90403 0.92121 1.25665 1.00397 0.95128 1.01998 1.70114 1.34446 1.20061 1.31032 0.85639 0.77889 0.77398 0.81346 1.20481 1.22456 1.20309 1.19808 0.97645 0.87624 0.87420 1.21840 0.89980 0.99166 0.98140 1.21700 0.99661 0.93272 1.03977 1.19526 0.96499 0.96551 1.15114 1.20237 0.80244 0.85619 0.74598 1.90704 1.77457 1.33074 1.43054 1.86612 1.26989 1.45136 1.69481 1.23271 0.90350 0.86282 1.02049 1.21819 0.93778 1.04211 1.00404 1.20862 0.92354 0.88482 0.99050 1.20576 1.00315 0.94686 0.98747 1.41490 1.16570 1.12907 1.41018 0.73644 0.94286 0.92178 0.91755 0.92399 0.94506 0.91751 0.95943 0.94398 0.90789 0.90850 0.85118 0.90773 0.91807 0.92171 0.91255 0.87516 0.88561 0.90186 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.91 71.98 0.71 -3.34 16 2 C -0.13 -4.65 6.26 30.60 0.19 -4.46 16 3 C 0.15 6.31 5.25 86.38 0.45 6.77 16 4 N -0.59 -26.77 2.44 -706.33 -1.72 -28.49 16 5 C -0.26 -13.41 9.49 84.03 0.80 -12.62 16 6 H 0.06 3.16 7.92 -2.91 -0.02 3.14 16 7 C -0.03 -1.88 4.93 84.86 0.42 -1.46 16 8 N -0.91 -52.46 11.32 21.65 0.25 -52.21 16 9 Si 0.95 44.39 29.61 68.60 2.03 46.42 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 C 0.20 7.61 6.21 85.63 0.53 8.14 16 14 C 0.02 0.80 6.70 40.97 0.27 1.07 16 15 C -0.16 -6.75 10.89 23.62 0.26 -6.49 16 16 C -0.27 -10.69 6.33 -18.82 -0.12 -10.81 16 17 C 0.54 21.25 7.95 70.15 0.56 21.81 16 18 O -0.55 -21.64 14.67 19.67 0.29 -21.35 16 19 O -0.37 -13.17 10.12 -57.01 -0.58 -13.75 16 20 C 0.05 1.44 6.20 71.98 0.45 1.89 16 21 C -0.15 -2.89 10.29 71.98 0.74 -2.15 16 22 C 0.11 3.89 7.22 42.04 0.30 4.19 16 23 C -0.09 -2.27 9.90 71.24 0.71 -1.56 16 24 N -0.52 -17.31 5.89 -170.38 -1.00 -18.31 16 25 H 0.42 11.36 8.96 -92.71 -0.83 10.53 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 3.32 5.31 -2.39 -0.01 3.31 16 32 H 0.02 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 35 H 0.07 2.72 8.04 -2.38 -0.02 2.70 16 36 H 0.13 5.53 8.06 -2.91 -0.02 5.50 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.08 2.41 6.51 -2.38 -0.02 2.39 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.84 369.88 5.69 -61.15 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.15 Total: 25.56 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 6.27 Total: 0.98 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -2.48 Total: -99.02 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.29 Total: -35.10 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.84 5.69 -61.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294774949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.340 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds