Wall clock time and date at job start Tue Mar 31 2020 06:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 N 1.46507 * 109.47305 * 179.97438 * 3 2 1 5 5 C 1.36853 * 119.99899 * 93.98644 * 4 3 2 6 6 H 1.08001 * 120.00223 * 219.01997 * 5 4 3 7 7 C 1.39034 * 119.99999 * 39.02097 * 5 4 3 8 8 N 1.31382 * 119.99753 * 17.67154 * 7 5 4 9 9 Si 1.86800 * 120.00178 * 197.66741 * 7 5 4 10 10 H 1.48496 * 109.46980 * 89.99996 * 9 7 5 11 11 H 1.48499 * 109.47085 * 210.00150 * 9 7 5 12 12 H 1.48501 * 109.47084 * 329.99908 * 9 7 5 13 13 C 1.34771 * 120.00072 * 274.26992 * 4 3 2 14 14 O 1.21730 * 120.00332 * 183.15782 * 13 4 3 15 15 C 1.46588 * 119.99989 * 3.15064 * 13 4 3 16 16 O 1.35346 * 126.65356 * 6.46046 * 15 13 4 17 17 C 1.33696 * 107.68618 * 179.97438 * 16 15 13 18 18 C 1.50700 * 125.41848 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47477 * 270.00031 * 18 17 16 20 20 C 1.52999 * 109.46911 * 64.99683 * 19 18 17 21 21 C 1.52996 * 109.47284 * 184.99840 * 19 18 17 22 22 N 1.30629 * 109.16916 * 359.97438 * 17 16 15 23 23 C 1.33670 * 109.00801 * 359.76683 * 22 17 16 24 24 C 1.50706 * 126.27969 * 180.23040 * 23 22 17 25 25 H 1.09002 * 109.47290 * 300.00230 * 1 2 3 26 26 H 1.09007 * 109.47058 * 59.99936 * 1 2 3 27 27 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47360 * 240.00302 * 2 1 3 29 29 H 1.09000 * 109.47196 * 119.99656 * 2 1 3 30 30 H 1.09001 * 109.47481 * 60.00266 * 3 2 1 31 31 H 1.09001 * 109.47538 * 299.99580 * 3 2 1 32 32 H 0.96998 * 120.00312 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46781 * 29.99881 * 18 17 16 34 34 H 1.09004 * 109.47365 * 149.99695 * 18 17 16 35 35 H 1.09003 * 109.46873 * 305.00241 * 19 18 17 36 36 H 1.08998 * 109.47454 * 300.00044 * 20 19 18 37 37 H 1.09008 * 109.47173 * 60.00193 * 20 19 18 38 38 H 1.08997 * 109.47139 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.46939 * 59.99668 * 21 19 18 40 40 H 1.08997 * 109.47303 * 180.02562 * 21 19 18 41 41 H 1.09008 * 109.47045 * 299.99957 * 21 19 18 42 42 H 1.09000 * 109.47128 * 270.17113 * 24 23 22 43 43 H 1.09003 * 109.46417 * 30.17044 * 24 23 22 44 44 H 1.09003 * 109.46990 * 150.16395 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 1.5248 -1.1814 6 1 5.0891 0.9447 -1.3260 7 6 3.7275 2.3553 -2.1962 8 7 2.8630 3.3064 -1.9241 9 14 4.3358 2.1188 -3.9465 10 1 3.4428 1.1684 -4.6567 11 1 4.3307 3.4249 -4.6530 12 1 5.7175 1.5752 -3.9212 13 6 4.1784 1.3559 1.1648 14 8 5.3943 1.4138 1.1705 15 6 3.4466 1.1920 2.4244 16 8 2.1156 0.9908 2.5652 17 6 1.8557 0.8933 3.8731 18 6 0.4944 0.6670 4.4785 19 6 -0.1745 2.0163 4.7484 20 6 -0.4355 2.7307 3.4209 21 6 -1.5014 1.7913 5.4760 22 7 2.9695 1.0253 4.5427 23 6 3.9762 1.2062 3.6820 24 6 5.4288 1.3953 4.0358 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5402 3.8856 -2.6320 33 1 -0.1192 0.0892 3.7872 34 1 0.5997 0.1198 5.4153 35 1 0.4804 2.6290 5.3680 36 1 0.5098 2.8911 2.9025 37 1 -1.0904 2.1181 2.8012 38 1 -0.9124 3.6918 3.6131 39 1 -1.3154 1.2823 6.4218 40 1 -1.9781 2.7526 5.6679 41 1 -2.1563 1.1787 4.8563 42 1 5.6349 2.4572 4.1699 43 1 5.6497 0.8625 4.9608 44 1 6.0525 1.0026 3.2326 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331047427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:49 Heat of formation + Delta-G solvation = -35.042476 kcal Electronic energy + Delta-G solvation = -25317.666945 eV Core-core repulsion = 21850.254039 eV Total energy + Delta-G solvation = -3467.412906 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85687 -38.44483 -36.52931 -35.68599 -34.42633 -32.87991 -31.38659 -31.19080 -28.26458 -27.21477 -27.08003 -25.83881 -24.40089 -21.82962 -21.33066 -20.92796 -20.04272 -19.50038 -17.17390 -16.53541 -16.30530 -15.80070 -15.21275 -14.67203 -14.40089 -14.32645 -14.06651 -13.75043 -13.50962 -13.24123 -12.79240 -12.76216 -12.47428 -12.36831 -12.28330 -12.02542 -11.72955 -11.65878 -11.44548 -11.39208 -11.24376 -11.06940 -11.00296 -10.77850 -10.71799 -10.46711 -10.38538 -10.35785 -10.22903 -9.88345 -9.05593 -8.74503 -8.16109 -7.58745 -6.47580 -4.12884 1.55230 2.92781 3.06169 3.13085 3.19263 3.24161 4.00116 4.17196 4.25210 4.70026 4.76493 4.82800 4.93466 5.01276 5.29734 5.39287 5.48294 5.53184 5.59582 5.62718 5.66174 5.71757 5.81334 5.84033 5.91744 6.02147 6.08945 6.12180 6.21264 6.25719 6.26661 6.32325 6.40065 6.42083 6.49088 6.51183 6.63478 6.88277 6.92043 7.25480 7.43912 8.02762 8.18667 8.37084 8.97944 9.18899 9.80152 10.55017 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.005600 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.141991 B = 4998.783737 C = 6047.105273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.102 3.898 4 N -0.414 5.414 5 C -0.307 4.307 6 H 0.096 0.904 7 C 0.040 3.960 8 N -0.860 5.860 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.524 3.476 14 O -0.559 6.559 15 C -0.064 4.064 16 O -0.174 6.174 17 C 0.176 3.824 18 C -0.016 4.016 19 C -0.093 4.093 20 C -0.152 4.152 21 C -0.144 4.144 22 N -0.486 5.486 23 C 0.030 3.970 24 C -0.070 4.070 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.272 0.728 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 -3.647 8.946 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C -0.022 4.022 4 N -0.129 5.129 5 C -0.435 4.435 6 H 0.114 0.886 7 C -0.166 4.166 8 N -0.497 5.497 9 Si 0.751 3.249 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.312 3.688 14 O -0.443 6.443 15 C -0.119 4.119 16 O -0.060 6.060 17 C -0.029 4.029 18 C -0.054 4.054 19 C -0.113 4.113 20 C -0.209 4.209 21 C -0.202 4.202 22 N -0.216 5.216 23 C -0.094 4.094 24 C -0.127 4.127 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.151 -3.478 9.390 13.565 hybrid contribution 0.019 0.067 -1.506 1.507 sum -9.132 -3.411 7.884 12.538 Atomic orbital electron populations 1.21637 0.96229 1.00562 1.01460 1.21893 0.95080 0.98847 1.01378 1.21801 0.81326 0.95046 1.03991 1.43453 1.05234 1.59967 1.04295 1.19535 1.10739 1.24394 0.88810 0.88621 1.25513 0.96740 0.93389 1.00914 1.69878 1.30778 1.15244 1.33770 0.85944 0.79700 0.77862 0.81395 1.20068 1.20738 1.19030 1.16731 0.86563 0.84877 0.80607 1.90671 1.11899 1.57190 1.84589 1.23843 0.79871 1.09610 0.98614 1.84790 1.25611 1.67663 1.27899 1.26127 0.97260 1.00955 0.78577 1.20165 0.85742 0.98847 1.00672 1.21144 0.96996 0.95223 0.97893 1.21917 1.02375 1.00242 0.96390 1.21810 0.96298 1.01963 1.00084 1.70124 0.97888 1.18911 1.34691 1.21816 0.97016 1.02876 0.87710 1.20223 0.87713 1.02251 1.02520 0.93109 0.92868 0.93508 0.92043 0.93127 0.92381 0.87122 0.91795 0.89115 0.88121 0.90474 0.92281 0.92229 0.92483 0.92469 0.92291 0.92380 0.91181 0.91690 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.15 0.37 -1.75 16 2 C -0.13 -2.53 5.70 -26.73 -0.15 -2.68 16 3 C 0.10 2.28 4.50 -4.04 -0.02 2.26 16 4 N -0.41 -10.66 2.51 -116.32 -0.29 -10.95 16 5 C -0.31 -8.34 8.87 -15.02 -0.13 -8.47 16 6 H 0.10 2.67 7.80 -52.49 -0.41 2.27 16 7 C 0.04 1.04 5.00 -17.45 -0.09 0.95 16 8 N -0.86 -22.65 11.39 55.50 0.63 -22.02 16 9 Si 0.93 19.96 29.59 -169.99 -5.03 14.93 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.52 13.50 7.57 -12.90 -0.10 13.40 16 14 O -0.56 -15.52 14.68 5.16 0.08 -15.45 16 15 C -0.06 -1.41 6.55 -36.85 -0.24 -1.65 16 16 O -0.17 -3.35 5.40 4.34 0.02 -3.33 16 17 C 0.18 2.98 6.74 -12.79 -0.09 2.89 16 18 C -0.02 -0.19 5.32 -27.88 -0.15 -0.34 16 19 C -0.09 -1.01 2.91 -90.62 -0.26 -1.27 16 20 C -0.15 -1.84 9.01 37.16 0.33 -1.50 16 21 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 22 N -0.49 -9.14 11.26 -7.04 -0.08 -9.21 16 23 C 0.03 0.62 7.16 -82.43 -0.59 0.03 16 24 C -0.07 -1.27 9.94 36.01 0.36 -0.91 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.98 6.63 -51.93 -0.34 0.63 16 30 H 0.06 1.28 5.75 -51.93 -0.30 0.98 16 31 H 0.11 2.67 5.53 -51.93 -0.29 2.39 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.90 6.90 -51.93 -0.36 0.54 16 37 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.89 6.36 -51.93 -0.33 1.55 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -30.27 355.78 -6.81 -37.08 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.08 Total: 3.47 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.42 Total: 0.12 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.26 Total: -42.18 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.10 Total: -18.78 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.27 -6.81 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331047427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.036 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds