Wall clock time and date at job start Tue Mar 31 2020 06:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 N 1.46507 * 109.47305 * 179.97438 * 3 2 1 5 5 C 1.36853 * 119.99899 * 93.98644 * 4 3 2 6 6 H 1.08001 * 120.00223 * 219.01997 * 5 4 3 7 7 C 1.39034 * 119.99999 * 39.02097 * 5 4 3 8 8 N 1.31382 * 119.99753 * 17.67154 * 7 5 4 9 9 Si 1.86800 * 120.00178 * 197.66741 * 7 5 4 10 10 H 1.48496 * 109.46980 * 89.99996 * 9 7 5 11 11 H 1.48499 * 109.47085 * 210.00150 * 9 7 5 12 12 H 1.48501 * 109.47084 * 329.99908 * 9 7 5 13 13 C 1.34771 * 120.00072 * 274.26992 * 4 3 2 14 14 O 1.21730 * 120.00332 * 183.15782 * 13 4 3 15 15 C 1.46588 * 119.99989 * 3.15064 * 13 4 3 16 16 O 1.35346 * 126.65356 * 6.46046 * 15 13 4 17 17 C 1.33696 * 107.68618 * 179.97438 * 16 15 13 18 18 C 1.50700 * 125.41848 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47477 * 270.00031 * 18 17 16 20 20 C 1.52999 * 109.46911 * 64.99683 * 19 18 17 21 21 C 1.52996 * 109.47284 * 184.99840 * 19 18 17 22 22 N 1.30629 * 109.16916 * 359.97438 * 17 16 15 23 23 C 1.33670 * 109.00801 * 359.76683 * 22 17 16 24 24 C 1.50706 * 126.27969 * 180.23040 * 23 22 17 25 25 H 1.09002 * 109.47290 * 300.00230 * 1 2 3 26 26 H 1.09007 * 109.47058 * 59.99936 * 1 2 3 27 27 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47360 * 240.00302 * 2 1 3 29 29 H 1.09000 * 109.47196 * 119.99656 * 2 1 3 30 30 H 1.09001 * 109.47481 * 60.00266 * 3 2 1 31 31 H 1.09001 * 109.47538 * 299.99580 * 3 2 1 32 32 H 0.96998 * 120.00312 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46781 * 29.99881 * 18 17 16 34 34 H 1.09004 * 109.47365 * 149.99695 * 18 17 16 35 35 H 1.09003 * 109.46873 * 305.00241 * 19 18 17 36 36 H 1.08998 * 109.47454 * 300.00044 * 20 19 18 37 37 H 1.09008 * 109.47173 * 60.00193 * 20 19 18 38 38 H 1.08997 * 109.47139 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.46939 * 59.99668 * 21 19 18 40 40 H 1.08997 * 109.47303 * 180.02562 * 21 19 18 41 41 H 1.09008 * 109.47045 * 299.99957 * 21 19 18 42 42 H 1.09000 * 109.47128 * 270.17113 * 24 23 22 43 43 H 1.09003 * 109.46417 * 30.17044 * 24 23 22 44 44 H 1.09003 * 109.46990 * 150.16395 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 1.5248 -1.1814 6 1 5.0891 0.9447 -1.3260 7 6 3.7275 2.3553 -2.1962 8 7 2.8630 3.3064 -1.9241 9 14 4.3358 2.1188 -3.9465 10 1 3.4428 1.1684 -4.6567 11 1 4.3307 3.4249 -4.6530 12 1 5.7175 1.5752 -3.9212 13 6 4.1784 1.3559 1.1648 14 8 5.3943 1.4138 1.1705 15 6 3.4466 1.1920 2.4244 16 8 2.1156 0.9908 2.5652 17 6 1.8557 0.8933 3.8731 18 6 0.4944 0.6670 4.4785 19 6 -0.1745 2.0163 4.7484 20 6 -0.4355 2.7307 3.4209 21 6 -1.5014 1.7913 5.4760 22 7 2.9695 1.0253 4.5427 23 6 3.9762 1.2062 3.6820 24 6 5.4288 1.3953 4.0358 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5402 3.8856 -2.6320 33 1 -0.1192 0.0892 3.7872 34 1 0.5997 0.1198 5.4153 35 1 0.4804 2.6290 5.3680 36 1 0.5098 2.8911 2.9025 37 1 -1.0904 2.1181 2.8012 38 1 -0.9124 3.6918 3.6131 39 1 -1.3154 1.2823 6.4218 40 1 -1.9781 2.7526 5.6679 41 1 -2.1563 1.1787 4.8563 42 1 5.6349 2.4572 4.1699 43 1 5.6497 0.8625 4.9608 44 1 6.0525 1.0026 3.2326 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331047427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:48 Heat of formation + Delta-G solvation = -53.893533 kcal Electronic energy + Delta-G solvation = -25318.484388 eV Core-core repulsion = 21850.254039 eV Total energy + Delta-G solvation = -3468.230349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.39173 -40.35673 -37.55384 -37.41791 -36.04309 -34.62753 -33.15595 -32.67279 -29.52735 -28.73056 -28.00520 -27.48311 -26.15956 -23.28530 -22.85642 -22.50084 -21.23484 -21.00380 -19.10578 -18.26710 -17.87207 -17.34447 -16.91714 -16.20296 -15.83908 -15.61053 -15.44274 -15.30020 -14.96373 -14.81255 -14.25555 -14.10881 -14.07883 -13.54212 -13.46456 -13.27971 -13.13280 -13.05556 -13.01576 -12.79326 -12.66542 -12.40846 -12.32760 -12.11939 -12.04798 -11.88304 -11.78673 -11.76862 -11.61038 -11.52094 -10.95982 -10.70614 -9.82804 -9.49967 -8.44390 -6.20236 -0.05558 1.35576 1.39481 1.46449 1.51654 1.58840 2.20283 2.28731 2.82268 2.95905 3.01845 3.76961 3.79505 3.88355 3.98517 4.07553 4.17798 4.28775 4.44603 4.48783 4.54150 4.63174 4.66613 4.70856 4.74712 4.77325 4.86649 4.90897 4.91915 4.97662 5.04439 5.09257 5.12740 5.23589 5.26076 5.31267 5.36145 5.37296 5.47225 5.49070 5.56900 6.08157 6.34695 6.64860 6.98255 7.22708 7.83026 8.57999 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.005600 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.141991 B = 4998.783737 C = 6047.105273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.109 3.891 4 N -0.427 5.427 5 C -0.344 4.344 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.992 3.008 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.271 1.271 13 C 0.514 3.486 14 O -0.596 6.596 15 C -0.105 4.105 16 O -0.175 6.175 17 C 0.204 3.796 18 C -0.020 4.020 19 C -0.087 4.087 20 C -0.152 4.152 21 C -0.137 4.137 22 N -0.501 5.501 23 C 0.039 3.961 24 C -0.068 4.068 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.279 0.721 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -4.457 10.009 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C -0.013 4.013 4 N -0.143 5.143 5 C -0.471 4.471 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.520 5.520 9 Si 0.814 3.186 10 H -0.184 1.184 11 H -0.198 1.198 12 H -0.195 1.195 13 C 0.303 3.697 14 O -0.484 6.484 15 C -0.161 4.161 16 O -0.062 6.062 17 C -0.002 4.002 18 C -0.057 4.057 19 C -0.107 4.107 20 C -0.210 4.210 21 C -0.194 4.194 22 N -0.231 5.231 23 C -0.085 4.085 24 C -0.125 4.125 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.846 -4.288 10.465 16.378 hybrid contribution 0.770 0.347 -1.668 1.870 sum -11.076 -3.940 8.796 14.683 Atomic orbital electron populations 1.21592 0.92708 1.02541 1.02173 1.21787 0.98002 0.96047 1.00370 1.21799 0.79570 0.97130 1.02832 1.43696 1.06497 1.60024 1.04055 1.19542 1.11293 1.25843 0.90451 0.90837 1.26308 0.96536 0.92426 1.04317 1.69951 1.31336 1.15548 1.35168 0.84972 0.79014 0.78263 0.76382 1.18378 1.19817 1.19546 1.17139 0.86592 0.84147 0.81784 1.90611 1.13439 1.58712 1.85679 1.23141 0.81209 1.14066 0.97657 1.84753 1.24183 1.67973 1.29243 1.27434 0.98770 0.96447 0.77568 1.20648 0.82981 1.00122 1.01983 1.21108 0.98351 0.94034 0.97178 1.21935 1.00604 1.01411 0.97026 1.21763 0.94426 1.02796 1.00459 1.70223 0.98037 1.20603 1.34242 1.22229 0.98270 1.00497 0.87463 1.20249 0.86255 1.03001 1.03037 0.91755 0.92823 0.90845 0.93474 0.93647 0.92467 0.89026 0.91157 0.86680 0.85594 0.91863 0.96161 0.90912 0.91573 0.91145 0.91740 0.91059 0.90420 0.88784 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -4.69 5.70 30.59 0.17 -4.52 16 3 C 0.11 5.05 4.50 86.38 0.39 5.44 16 4 N -0.43 -23.14 2.51 -640.13 -1.61 -24.75 16 5 C -0.34 -19.63 8.87 84.10 0.75 -18.88 16 6 H 0.07 4.40 7.80 -2.91 -0.02 4.38 16 7 C 0.01 0.43 5.00 84.95 0.42 0.85 16 8 N -0.88 -47.58 11.39 21.68 0.25 -47.33 16 9 Si 0.99 41.56 29.59 68.60 2.03 43.59 16 10 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.51 27.94 7.57 86.42 0.65 28.59 16 14 O -0.60 -35.29 14.68 -4.45 -0.07 -35.36 16 15 C -0.11 -4.83 6.55 24.04 0.16 -4.67 16 16 O -0.17 -6.73 5.40 -7.40 -0.04 -6.77 16 17 C 0.20 6.54 6.74 88.29 0.59 7.14 16 18 C -0.02 -0.39 5.32 29.85 0.16 -0.24 16 19 C -0.09 -1.63 2.91 -10.79 -0.03 -1.66 16 20 C -0.15 -3.39 9.01 71.98 0.65 -2.74 16 21 C -0.14 -1.65 9.19 71.98 0.66 -0.98 16 22 N -0.50 -18.26 11.26 -290.93 -3.27 -21.53 16 23 C 0.04 1.63 7.16 41.87 0.30 1.93 16 24 C -0.07 -2.51 9.94 71.24 0.71 -1.80 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.75 6.63 -2.39 -0.02 1.74 16 30 H 0.06 2.60 5.75 -2.39 -0.01 2.59 16 31 H 0.09 4.57 5.53 -2.39 -0.01 4.56 16 32 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.02 0.59 6.90 -2.39 -0.02 0.57 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 42 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.07 3.10 6.36 -2.39 -0.02 3.09 16 Total: -1.00 -69.72 355.78 4.57 -65.16 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.98 Total: 21.54 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.30 Total: 5.46 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -4.64 Total: -93.61 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.11 Total: -42.13 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -69.72 4.57 -65.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331047427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.262 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds