Wall clock time and date at job start Tue Mar 31 2020 08:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47363 * 2 1 4 4 O 1.21282 * 119.99968 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00367 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.62719 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77754 * 233.59380 * 6 5 3 8 8 C 1.53042 * 109.31334 * 305.36689 * 7 6 5 9 9 C 1.53040 * 109.53671 * 61.36578 * 8 7 6 10 10 H 1.08997 * 109.52898 * 58.60497 * 9 8 7 11 11 C 1.50699 * 109.49677 * 178.68581 * 9 8 7 12 12 O 1.21288 * 120.00360 * 359.83911 * 11 9 8 13 13 N 1.34777 * 119.99858 * 179.83749 * 11 9 8 14 14 C 1.37109 * 119.99915 * 179.97438 * 13 11 9 15 15 H 1.07997 * 119.99919 * 141.03073 * 14 13 11 16 16 C 1.38944 * 119.99794 * 321.03069 * 14 13 11 17 17 N 1.31416 * 119.99742 * 157.55983 * 16 14 13 18 18 Si 1.86801 * 120.00342 * 337.55937 * 16 14 13 19 19 H 1.48505 * 109.46757 * 93.66143 * 18 16 14 20 20 H 1.48499 * 109.47171 * 213.66452 * 18 16 14 21 21 H 1.48506 * 109.46797 * 333.66686 * 18 16 14 22 22 C 1.46503 * 120.00179 * 359.97438 * 13 11 9 23 23 C 1.53001 * 117.49819 * 173.73217 * 22 13 11 24 24 C 1.53003 * 117.49738 * 242.39148 * 22 13 11 25 25 C 1.46927 * 120.63437 * 180.02562 * 5 3 2 26 26 H 1.08998 * 109.46726 * 300.00541 * 1 2 3 27 27 H 1.09000 * 109.46653 * 60.00106 * 1 2 3 28 28 H 1.08994 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46927 * 239.99952 * 2 1 3 30 30 H 1.09000 * 109.47396 * 119.99898 * 2 1 3 31 31 H 1.09000 * 109.58846 * 353.38061 * 6 5 3 32 32 H 1.09002 * 109.58472 * 113.80552 * 6 5 3 33 33 H 1.08993 * 109.49964 * 65.31699 * 7 6 5 34 34 H 1.09000 * 109.50091 * 185.41543 * 7 6 5 35 35 H 1.09004 * 109.46031 * 301.34841 * 8 7 6 36 36 H 1.08997 * 109.46166 * 181.38657 * 8 7 6 37 37 H 0.96998 * 119.99759 * 179.97438 * 17 16 14 38 38 H 1.08994 * 115.55038 * 28.05902 * 22 13 11 39 39 H 1.09000 * 117.49839 * 215.00156 * 23 22 13 40 40 H 1.08999 * 117.49921 * 0.02562 * 23 22 13 41 41 H 1.09007 * 117.49979 * 359.97353 * 24 22 13 42 42 H 1.08997 * 117.50156 * 144.97516 * 24 22 13 43 43 H 1.08998 * 109.58296 * 6.61527 * 25 5 3 44 44 H 1.09000 * 109.70061 * 246.26516 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.3244 0.5609 -0.0017 7 6 5.2977 0.7554 1.1653 8 6 5.9320 2.1449 1.0690 9 6 4.8409 3.2135 1.1668 10 1 4.3052 3.1021 2.1094 11 6 5.4698 4.5816 1.1043 12 8 6.6727 4.6918 0.9955 13 7 4.6954 5.6828 1.1693 14 6 5.2676 6.9275 1.1130 15 1 4.7828 7.7203 0.5627 16 6 6.4711 7.1689 1.7640 17 7 7.2381 8.1643 1.3793 18 14 6.9991 6.0786 3.1859 19 1 7.8685 4.9875 2.6767 20 1 7.7508 6.8884 4.1780 21 1 5.7977 5.4929 3.8332 22 6 3.2423 5.5498 1.3001 23 6 2.4324 6.8298 1.5163 24 6 2.3772 6.1072 0.1679 25 6 3.8625 3.0468 0.0000 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7970 -0.3857 0.1164 32 1 4.8765 0.5591 -0.9415 33 1 4.7578 0.6666 2.1079 34 1 6.0777 -0.0046 1.1191 35 1 6.4509 2.2419 0.1153 36 1 6.6434 2.2766 1.8843 37 1 8.0781 8.3331 1.8340 38 1 2.8961 4.6448 1.7992 39 1 1.5533 6.7668 2.1577 40 1 2.9807 7.7708 1.5608 41 1 2.8891 6.5733 -0.6740 42 1 1.4620 5.5688 -0.0780 43 1 3.0302 3.7405 0.1192 44 1 4.3762 3.2505 -0.9395 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331978911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:12 Heat of formation + Delta-G solvation = -31.149145 kcal Electronic energy + Delta-G solvation = -25561.181631 eV Core-core repulsion = 22093.937553 eV Total energy + Delta-G solvation = -3467.244078 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44025 -39.14163 -37.16508 -36.32064 -33.36585 -32.88960 -32.35457 -31.69552 -30.78360 -25.95535 -25.62731 -23.85793 -23.15647 -21.84589 -21.46529 -20.80884 -19.12899 -18.82816 -17.44939 -16.82720 -16.13045 -15.90495 -15.70668 -15.02953 -14.83143 -14.33318 -14.06717 -13.88281 -13.61859 -13.46477 -13.18081 -12.93678 -12.68533 -12.58153 -12.41559 -12.10722 -11.89408 -11.58746 -11.35955 -11.26701 -11.11445 -10.89813 -10.84494 -10.76217 -10.54374 -10.19295 -9.97770 -9.82647 -9.75766 -9.68282 -8.66500 -8.49464 -8.32403 -7.48800 -6.19106 -3.90961 2.63537 2.96256 3.29260 3.49005 3.66674 3.79188 4.29908 4.42784 4.54227 4.62425 4.72814 4.87819 4.88890 4.95292 4.98831 5.14536 5.25790 5.30076 5.35047 5.45372 5.48148 5.56262 5.60306 5.64783 5.69562 5.76053 5.79652 5.87287 5.94447 6.00965 6.06455 6.15519 6.26886 6.34317 6.44451 6.50641 6.57597 6.69618 6.91093 7.42298 7.84677 7.95423 8.19399 8.77879 8.91358 9.44583 9.82006 10.85732 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.005881 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.365418 B = 4759.891827 C = 5778.269361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.510 3.490 4 O -0.539 6.539 5 N -0.611 5.611 6 C 0.105 3.895 7 C -0.135 4.135 8 C -0.099 4.099 9 C -0.114 4.114 10 H 0.082 0.918 11 C 0.450 3.550 12 O -0.539 6.539 13 N -0.430 5.430 14 C -0.351 4.351 15 H 0.096 0.904 16 C 0.095 3.905 17 N -0.862 5.862 18 Si 0.910 3.090 19 H -0.250 1.250 20 H -0.310 1.310 21 H -0.283 1.283 22 C 0.061 3.939 23 C -0.173 4.173 24 C -0.194 4.194 25 C 0.112 3.888 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.272 0.728 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -17.984 -1.283 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.416 6.416 5 N -0.345 5.345 6 C -0.018 4.018 7 C -0.173 4.173 8 C -0.137 4.137 9 C -0.137 4.137 10 H 0.101 0.899 11 C 0.240 3.760 12 O -0.422 6.422 13 N -0.149 5.149 14 C -0.476 4.476 15 H 0.113 0.887 16 C -0.114 4.114 17 N -0.497 5.497 18 Si 0.741 3.259 19 H -0.176 1.176 20 H -0.240 1.240 21 H -0.209 1.209 22 C -0.044 4.044 23 C -0.211 4.211 24 C -0.233 4.233 25 C -0.010 4.010 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.131 0.869 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.354 -17.297 -1.347 19.710 hybrid contribution 0.381 -0.432 0.803 0.988 sum -8.972 -17.728 -0.544 19.877 Atomic orbital electron populations 1.21532 0.93113 1.01330 1.03443 1.21657 0.98501 0.94193 1.03959 1.20761 0.81677 0.91828 0.75930 1.90696 1.54682 1.46511 1.49723 1.48230 1.05539 1.07557 1.73170 1.21797 0.91203 0.89420 0.99365 1.21965 0.98676 0.98304 0.98383 1.21306 0.96851 0.91698 1.03852 1.21561 0.97382 0.95059 0.99678 0.89945 1.19907 0.87742 0.85105 0.83257 1.90542 1.13931 1.85589 1.52098 1.43185 1.02632 1.05799 1.63323 1.18705 1.06671 0.87562 1.34698 0.88679 1.25228 0.94793 0.94947 0.96470 1.69777 1.10631 1.30960 1.38324 0.86445 0.79206 0.81068 0.79172 1.17599 1.23958 1.20904 1.21795 0.82603 0.97612 1.02431 1.23197 1.01046 0.98039 0.98798 1.23335 1.01661 1.04938 0.93373 1.21905 0.98641 0.82635 0.97851 0.91965 0.91964 0.92297 0.89124 0.89095 0.89831 0.91094 0.91622 0.90476 0.90875 0.91023 0.91834 0.87371 0.89470 0.87042 0.88689 0.88930 0.86903 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.20 37.16 0.34 -0.85 16 2 C -0.14 -1.23 4.77 -27.88 -0.13 -1.37 16 3 C 0.51 6.71 7.70 -10.99 -0.08 6.63 16 4 O -0.54 -9.09 15.40 5.56 0.09 -9.00 16 5 N -0.61 -7.97 2.97 -172.78 -0.51 -8.48 16 6 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 7 C -0.14 -1.45 6.08 -26.61 -0.16 -1.61 16 8 C -0.10 -1.54 4.46 -26.69 -0.12 -1.66 16 9 C -0.11 -2.06 1.89 -91.66 -0.17 -2.23 16 10 H 0.08 1.45 7.57 -51.93 -0.39 1.06 16 11 C 0.45 10.68 5.34 -10.99 -0.06 10.62 16 12 O -0.54 -14.75 11.08 5.55 0.06 -14.68 16 13 N -0.43 -10.44 2.56 -107.73 -0.28 -10.71 16 14 C -0.35 -9.88 8.52 -14.93 -0.13 -10.01 16 15 H 0.10 2.79 7.29 -52.49 -0.38 2.41 16 16 C 0.10 2.81 4.77 -17.47 -0.08 2.73 16 17 N -0.86 -26.47 13.96 55.50 0.77 -25.70 16 18 Si 0.91 24.49 24.86 -169.99 -4.23 20.27 16 19 H -0.25 -6.94 6.13 56.52 0.35 -6.59 16 20 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 21 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 22 C 0.06 1.22 4.31 -67.93 -0.29 0.93 16 23 C -0.17 -3.20 9.79 -26.69 -0.26 -3.46 16 24 C -0.19 -3.51 9.43 -26.69 -0.25 -3.76 16 25 C 0.11 1.83 5.28 -3.72 -0.02 1.81 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.61 7.94 -51.93 -0.41 0.19 16 30 H 0.09 0.62 7.69 -51.93 -0.40 0.22 16 31 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 36 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 38 H 0.11 2.01 6.26 -51.93 -0.33 1.68 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.11 2.29 6.69 -51.93 -0.35 1.94 16 41 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.11 1.99 3.38 -51.93 -0.18 1.81 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -34.43 337.64 -7.45 -41.88 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.00 Total: 2.58 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.45 Total: -1.24 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.01 Total: -44.89 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.15 Total: -23.68 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.23 Total: 20.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.43 -7.45 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331978911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.733 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds