Wall clock time and date at job start Tue Mar 31 2020 08:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47363 * 2 1 4 4 O 1.21282 * 119.99968 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00367 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.62719 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77754 * 233.59380 * 6 5 3 8 8 C 1.53042 * 109.31334 * 305.36689 * 7 6 5 9 9 C 1.53040 * 109.53671 * 61.36578 * 8 7 6 10 10 H 1.08997 * 109.52898 * 58.60497 * 9 8 7 11 11 C 1.50699 * 109.49677 * 178.68581 * 9 8 7 12 12 O 1.21288 * 120.00360 * 359.83911 * 11 9 8 13 13 N 1.34777 * 119.99858 * 179.83749 * 11 9 8 14 14 C 1.37109 * 119.99915 * 179.97438 * 13 11 9 15 15 H 1.07997 * 119.99919 * 141.03073 * 14 13 11 16 16 C 1.38944 * 119.99794 * 321.03069 * 14 13 11 17 17 N 1.31416 * 119.99742 * 157.55983 * 16 14 13 18 18 Si 1.86801 * 120.00342 * 337.55937 * 16 14 13 19 19 H 1.48505 * 109.46757 * 93.66143 * 18 16 14 20 20 H 1.48499 * 109.47171 * 213.66452 * 18 16 14 21 21 H 1.48506 * 109.46797 * 333.66686 * 18 16 14 22 22 C 1.46503 * 120.00179 * 359.97438 * 13 11 9 23 23 C 1.53001 * 117.49819 * 173.73217 * 22 13 11 24 24 C 1.53003 * 117.49738 * 242.39148 * 22 13 11 25 25 C 1.46927 * 120.63437 * 180.02562 * 5 3 2 26 26 H 1.08998 * 109.46726 * 300.00541 * 1 2 3 27 27 H 1.09000 * 109.46653 * 60.00106 * 1 2 3 28 28 H 1.08994 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46927 * 239.99952 * 2 1 3 30 30 H 1.09000 * 109.47396 * 119.99898 * 2 1 3 31 31 H 1.09000 * 109.58846 * 353.38061 * 6 5 3 32 32 H 1.09002 * 109.58472 * 113.80552 * 6 5 3 33 33 H 1.08993 * 109.49964 * 65.31699 * 7 6 5 34 34 H 1.09000 * 109.50091 * 185.41543 * 7 6 5 35 35 H 1.09004 * 109.46031 * 301.34841 * 8 7 6 36 36 H 1.08997 * 109.46166 * 181.38657 * 8 7 6 37 37 H 0.96998 * 119.99759 * 179.97438 * 17 16 14 38 38 H 1.08994 * 115.55038 * 28.05902 * 22 13 11 39 39 H 1.09000 * 117.49839 * 215.00156 * 23 22 13 40 40 H 1.08999 * 117.49921 * 0.02562 * 23 22 13 41 41 H 1.09007 * 117.49979 * 359.97353 * 24 22 13 42 42 H 1.08997 * 117.50156 * 144.97516 * 24 22 13 43 43 H 1.08998 * 109.58296 * 6.61527 * 25 5 3 44 44 H 1.09000 * 109.70061 * 246.26516 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.3244 0.5609 -0.0017 7 6 5.2977 0.7554 1.1653 8 6 5.9320 2.1449 1.0690 9 6 4.8409 3.2135 1.1668 10 1 4.3052 3.1021 2.1094 11 6 5.4698 4.5816 1.1043 12 8 6.6727 4.6918 0.9955 13 7 4.6954 5.6828 1.1693 14 6 5.2676 6.9275 1.1130 15 1 4.7828 7.7203 0.5627 16 6 6.4711 7.1689 1.7640 17 7 7.2381 8.1643 1.3793 18 14 6.9991 6.0786 3.1859 19 1 7.8685 4.9875 2.6767 20 1 7.7508 6.8884 4.1780 21 1 5.7977 5.4929 3.8332 22 6 3.2423 5.5498 1.3001 23 6 2.4324 6.8298 1.5163 24 6 2.3772 6.1072 0.1679 25 6 3.8625 3.0468 0.0000 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7970 -0.3857 0.1164 32 1 4.8765 0.5591 -0.9415 33 1 4.7578 0.6666 2.1079 34 1 6.0777 -0.0046 1.1191 35 1 6.4509 2.2419 0.1153 36 1 6.6434 2.2766 1.8843 37 1 8.0781 8.3331 1.8340 38 1 2.8961 4.6448 1.7992 39 1 1.5533 6.7668 2.1577 40 1 2.9807 7.7708 1.5608 41 1 2.8891 6.5733 -0.6740 42 1 1.4620 5.5688 -0.0780 43 1 3.0302 3.7405 0.1192 44 1 4.3762 3.2505 -0.9395 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331978911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:11 Heat of formation + Delta-G solvation = -54.361214 kcal Electronic energy + Delta-G solvation = -25562.188182 eV Core-core repulsion = 22093.937553 eV Total energy + Delta-G solvation = -3468.250629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76305 -40.62221 -38.47749 -37.93202 -35.04125 -34.25098 -33.48399 -33.33759 -32.12542 -27.43874 -26.95418 -25.19725 -24.19019 -23.39695 -22.90659 -22.26444 -20.86519 -19.84063 -18.96401 -18.10587 -17.92549 -17.22653 -16.78481 -16.69706 -16.26737 -15.67318 -15.46122 -15.16950 -15.12095 -14.91850 -14.60121 -14.57298 -14.16520 -13.66731 -13.63089 -13.40252 -13.08598 -12.96476 -12.66890 -12.61165 -12.43010 -12.28761 -12.12432 -11.99527 -11.95826 -11.78872 -11.72263 -11.42663 -11.36523 -10.78836 -10.72504 -10.30455 -9.65815 -9.46039 -8.45903 -6.16072 1.17046 1.31428 1.46460 1.66065 1.79930 2.06066 2.40748 2.55450 2.89419 3.16495 3.55308 3.62937 3.80831 3.87316 3.94223 4.04973 4.05578 4.15440 4.21160 4.22494 4.27896 4.33646 4.52632 4.61781 4.72506 4.78930 4.80226 4.84321 4.89741 4.93027 5.03230 5.09185 5.12755 5.13478 5.19031 5.36637 5.38626 5.39758 5.50174 5.66616 5.78900 6.48571 6.69007 6.85074 7.22723 7.30732 7.81660 8.62609 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.005881 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.365418 B = 4759.891827 C = 5778.269361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.502 3.498 4 O -0.584 6.584 5 N -0.610 5.610 6 C 0.101 3.899 7 C -0.124 4.124 8 C -0.100 4.100 9 C -0.103 4.103 10 H 0.092 0.908 11 C 0.445 3.555 12 O -0.581 6.581 13 N -0.445 5.445 14 C -0.345 4.345 15 H 0.070 0.930 16 C 0.048 3.952 17 N -0.906 5.906 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.305 1.305 21 H -0.272 1.272 22 C 0.047 3.953 23 C -0.167 4.167 24 C -0.175 4.175 25 C 0.121 3.879 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.273 0.727 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -22.208 -0.708 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.293 3.707 4 O -0.464 6.464 5 N -0.343 5.343 6 C -0.020 4.020 7 C -0.162 4.162 8 C -0.138 4.138 9 C -0.125 4.125 10 H 0.111 0.889 11 C 0.236 3.764 12 O -0.466 6.466 13 N -0.164 5.164 14 C -0.471 4.471 15 H 0.088 0.912 16 C -0.157 4.157 17 N -0.543 5.543 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.235 1.235 21 H -0.197 1.197 22 C -0.058 4.058 23 C -0.205 4.205 24 C -0.213 4.213 25 C -0.003 4.003 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.276 -21.552 -0.768 24.336 hybrid contribution 0.908 0.873 0.509 1.359 sum -10.368 -20.679 -0.259 23.134 Atomic orbital electron populations 1.21543 0.93544 1.02606 1.01767 1.21748 0.98015 0.90975 1.06653 1.21706 0.81028 0.93469 0.74517 1.90675 1.55735 1.48320 1.51627 1.48306 1.06411 1.06666 1.72935 1.22119 0.90802 0.89875 0.99232 1.21942 0.99578 0.95302 0.99396 1.21340 0.95949 0.94201 1.02314 1.21519 0.98337 0.91808 1.00878 0.88949 1.21013 0.87394 0.87071 0.80950 1.90502 1.16035 1.86604 1.53440 1.43338 1.04669 1.04713 1.63729 1.18599 1.06418 0.88636 1.33477 0.91222 1.25863 0.95283 0.96049 0.98495 1.69855 1.11457 1.33004 1.40016 0.85612 0.78923 0.79247 0.77156 1.19294 1.23454 1.19654 1.21997 0.80111 0.99246 1.04417 1.23251 1.01499 0.96053 0.99652 1.23248 1.01604 1.04122 0.92362 1.21514 0.97467 0.85193 0.96152 0.93685 0.93716 0.89463 0.86226 0.86149 0.85350 0.90364 0.90714 0.87496 0.92257 0.93052 0.91781 0.85261 0.85858 0.89706 0.90697 0.86498 0.88196 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.20 71.98 0.66 -1.26 16 2 C -0.13 -1.63 4.77 29.85 0.14 -1.49 16 3 C 0.50 11.54 7.70 87.66 0.67 12.22 16 4 O -0.58 -18.58 15.40 -3.04 -0.05 -18.62 16 5 N -0.61 -13.91 2.97 -818.93 -2.43 -16.34 16 6 C 0.10 1.45 6.34 86.36 0.55 2.00 16 7 C -0.12 -2.14 6.08 30.67 0.19 -1.95 16 8 C -0.10 -2.97 4.46 30.62 0.14 -2.83 16 9 C -0.10 -3.61 1.89 -11.47 -0.02 -3.63 16 10 H 0.09 3.07 7.57 -2.39 -0.02 3.05 16 11 C 0.44 21.35 5.34 87.66 0.47 21.82 16 12 O -0.58 -32.65 11.08 -3.06 -0.03 -32.68 16 13 N -0.44 -21.97 2.56 -613.13 -1.57 -23.54 16 14 C -0.34 -20.16 8.52 84.04 0.72 -19.45 16 15 H 0.07 4.33 7.29 -2.91 -0.02 4.31 16 16 C 0.05 2.92 4.77 84.92 0.41 3.33 16 17 N -0.91 -58.03 13.96 21.66 0.30 -57.73 16 18 Si 0.96 51.96 24.86 68.60 1.71 53.67 16 19 H -0.27 -14.99 6.13 99.48 0.61 -14.38 16 20 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 21 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 22 C 0.05 1.84 4.31 44.99 0.19 2.03 16 23 C -0.17 -6.05 9.79 30.62 0.30 -5.75 16 24 C -0.17 -6.22 9.43 30.62 0.29 -5.93 16 25 C 0.12 3.79 5.28 86.36 0.46 4.24 16 26 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 27 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.12 0.84 7.94 -2.39 -0.02 0.82 16 30 H 0.12 0.84 7.69 -2.39 -0.02 0.82 16 31 H 0.13 0.78 5.93 -2.39 -0.01 0.77 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.90 8.13 -2.38 -0.02 1.88 16 36 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 37 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 38 H 0.13 4.56 6.26 -2.39 -0.01 4.55 16 39 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.08 3.57 6.69 -2.39 -0.02 3.55 16 41 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 42 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.10 3.42 3.38 -2.39 -0.01 3.41 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -80.44 337.64 3.97 -76.47 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.89 Total: 15.43 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.16 Total: 3.35 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -3.70 Total: -97.61 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.08 Total: -51.31 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 1.71 Total: 53.67 kcal Total: -80.44 3.97 -76.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331978911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.108 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds