Wall clock time and date at job start Tue Mar 31 2020 08:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47125 * 2 1 4 4 O 1.21274 * 120.00339 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99755 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63249 * 0.02562 * 5 3 2 7 7 C 1.53184 * 108.89682 * 126.33832 * 6 5 3 8 8 C 1.53361 * 109.14672 * 54.57789 * 7 6 5 9 9 C 1.53041 * 109.60377 * 298.71280 * 8 7 6 10 10 H 1.09004 * 109.49782 * 301.41963 * 9 8 7 11 11 C 1.50706 * 109.52069 * 181.34448 * 9 8 7 12 12 O 1.21287 * 119.99720 * 0.14067 * 11 9 8 13 13 N 1.34771 * 120.00020 * 180.14675 * 11 9 8 14 14 C 1.37093 * 120.00116 * 179.97438 * 13 11 9 15 15 H 1.08005 * 120.00416 * 131.70012 * 14 13 11 16 16 C 1.38957 * 119.99965 * 311.69857 * 14 13 11 17 17 N 1.31405 * 119.99807 * 167.17260 * 16 14 13 18 18 Si 1.86797 * 119.99765 * 347.17193 * 16 14 13 19 19 H 1.48497 * 109.46883 * 94.66024 * 18 16 14 20 20 H 1.48495 * 109.47025 * 214.65787 * 18 16 14 21 21 H 1.48504 * 109.47376 * 334.66168 * 18 16 14 22 22 C 1.46508 * 119.99778 * 359.97438 * 13 11 9 23 23 C 1.53001 * 117.49733 * 186.70091 * 22 13 11 24 24 C 1.52997 * 60.00288 * 252.51761 * 23 22 13 25 25 C 1.46919 * 120.62622 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.47229 * 59.99829 * 1 2 3 27 27 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46784 * 299.99953 * 1 2 3 29 29 H 1.09006 * 109.47055 * 240.00006 * 2 1 3 30 30 H 1.09001 * 109.47229 * 120.00170 * 2 1 3 31 31 H 1.09000 * 109.58343 * 246.20486 * 6 5 3 32 32 H 1.09006 * 109.58662 * 6.48025 * 6 5 3 33 33 H 1.08999 * 109.49975 * 174.65413 * 7 6 5 34 34 H 1.09003 * 109.49756 * 294.75714 * 7 6 5 35 35 H 1.08997 * 109.41774 * 178.67896 * 8 7 6 36 36 H 1.08992 * 109.41948 * 58.74943 * 8 7 6 37 37 H 0.97001 * 120.00034 * 179.97438 * 17 16 14 38 38 H 1.08997 * 115.55174 * 332.41490 * 22 13 11 39 39 H 1.09009 * 117.49828 * 0.02562 * 23 22 13 40 40 H 1.08999 * 117.49865 * 145.01800 * 23 22 13 41 41 H 1.09002 * 117.49437 * 252.51704 * 24 23 22 42 42 H 1.08998 * 117.51908 * 107.48075 * 24 23 22 43 43 H 1.08994 * 109.59166 * 353.37786 * 25 5 3 44 44 H 1.09010 * 109.58705 * 113.66313 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3244 0.5608 0.0005 7 6 5.2979 0.7529 -1.1665 8 6 5.9319 2.1459 -1.0687 9 6 4.8407 3.2146 -1.1653 10 1 4.3050 3.1034 -2.1081 11 6 5.4690 4.5830 -1.1022 12 8 6.6719 4.6935 -0.9935 13 7 4.6942 5.6838 -1.1665 14 6 5.2657 6.9286 -1.1086 15 1 4.9908 7.6832 -1.8307 16 6 6.1986 7.2195 -0.1207 17 7 6.9294 8.3081 -0.2073 18 14 6.4137 6.0630 1.3303 19 1 7.5226 5.1163 1.0486 20 1 6.7328 6.8507 2.5480 21 1 5.1569 5.3025 1.5479 22 6 3.2412 5.5502 -1.2983 23 6 2.4318 6.8289 -1.5238 24 6 2.3747 6.1160 -0.1713 25 6 3.8624 3.0467 0.0011 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.8765 0.5582 0.9404 32 1 3.7967 -0.3858 -0.1158 33 1 6.0763 -0.0088 -1.1202 34 1 4.7577 0.6648 -2.1092 35 1 6.6431 2.2784 -1.8840 36 1 6.4507 2.2418 -0.1150 37 1 7.5804 8.5114 0.4825 38 1 2.8954 4.6417 -1.7914 39 1 2.9804 7.7695 -1.5746 40 1 1.5534 6.7619 -2.1657 41 1 1.4586 5.5799 0.0767 42 1 2.8857 6.5872 0.6683 43 1 3.0301 3.7405 -0.1174 44 1 4.3747 3.2480 0.9420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331978914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:14 Heat of formation + Delta-G solvation = -34.237614 kcal Electronic energy + Delta-G solvation = -25699.232109 eV Core-core repulsion = 22231.854105 eV Total energy + Delta-G solvation = -3467.378004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45675 -39.15029 -37.15610 -36.30032 -33.36182 -32.90166 -32.36373 -31.70624 -30.80581 -25.97019 -25.64215 -23.87674 -23.16742 -21.89536 -21.45114 -20.79024 -19.02478 -18.83599 -17.40131 -16.71834 -16.34826 -15.89650 -15.72045 -15.35450 -14.58524 -14.29154 -14.07605 -13.87296 -13.63133 -13.50664 -13.11826 -12.98626 -12.68357 -12.63063 -12.40866 -12.19749 -11.89622 -11.56090 -11.44923 -11.33124 -11.07763 -10.85566 -10.80407 -10.65772 -10.51185 -10.19022 -10.01047 -9.93220 -9.75851 -9.57940 -8.72312 -8.63924 -8.40802 -7.41459 -6.19776 -4.03910 2.63064 2.93906 3.28640 3.41525 3.58397 3.74025 4.28555 4.41979 4.47526 4.66902 4.70774 4.87148 4.88402 4.94696 4.97188 5.12305 5.22025 5.26491 5.36040 5.43503 5.49488 5.57231 5.59980 5.67860 5.73637 5.76603 5.77227 5.85328 5.91159 5.99441 6.06168 6.14528 6.29861 6.35708 6.44663 6.49173 6.54933 6.75778 6.95409 7.41613 7.83760 8.03157 8.18930 8.75663 8.89652 9.40126 9.78917 10.85744 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.006225 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.166007 B = 4496.605415 C = 5307.510426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.510 3.490 4 O -0.538 6.538 5 N -0.611 5.611 6 C 0.104 3.896 7 C -0.134 4.134 8 C -0.100 4.100 9 C -0.116 4.116 10 H 0.089 0.911 11 C 0.466 3.534 12 O -0.540 6.540 13 N -0.437 5.437 14 C -0.340 4.340 15 H 0.096 0.904 16 C 0.090 3.910 17 N -0.871 5.871 18 Si 0.906 3.094 19 H -0.259 1.259 20 H -0.307 1.307 21 H -0.275 1.275 22 C 0.060 3.940 23 C -0.172 4.172 24 C -0.195 4.195 25 C 0.106 3.894 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 -18.391 0.290 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.415 6.415 5 N -0.345 5.345 6 C -0.019 4.019 7 C -0.172 4.172 8 C -0.138 4.138 9 C -0.139 4.139 10 H 0.107 0.893 11 C 0.254 3.746 12 O -0.422 6.422 13 N -0.157 5.157 14 C -0.466 4.466 15 H 0.113 0.887 16 C -0.118 4.118 17 N -0.506 5.506 18 Si 0.736 3.264 19 H -0.184 1.184 20 H -0.236 1.236 21 H -0.200 1.200 22 C -0.046 4.046 23 C -0.210 4.210 24 C -0.234 4.234 25 C -0.016 4.016 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.083 -17.693 0.402 19.892 hybrid contribution 0.268 -0.457 0.754 0.922 sum -8.815 -18.150 1.156 20.211 Atomic orbital electron populations 1.21532 0.93090 1.01338 1.03457 1.21656 0.98515 0.94137 1.03970 1.20773 0.81643 0.91856 0.75933 1.90696 1.54659 1.46513 1.49653 1.48231 1.05580 1.07460 1.73233 1.21802 0.91278 0.89440 0.99413 1.22011 0.98652 0.98212 0.98361 1.21367 0.96898 0.91736 1.03780 1.21619 0.97391 0.95045 0.99829 0.89326 1.20126 0.87435 0.85234 0.81759 1.90535 1.14168 1.85939 1.51538 1.43170 1.02197 1.05690 1.64657 1.18751 1.24344 0.88558 1.14987 0.88688 1.25345 0.94034 0.95042 0.97386 1.69696 1.20864 1.25965 1.34066 0.86400 0.79710 0.80935 0.79330 1.18411 1.23624 1.20033 1.21891 0.82586 0.97328 1.02779 1.23135 1.00940 0.98030 0.98891 1.23282 1.01500 1.05024 0.93547 1.21987 0.98845 0.82831 0.97895 0.91936 0.92281 0.91978 0.89043 0.89144 0.91229 0.89753 0.90415 0.91464 0.90596 0.91297 0.91822 0.87188 0.87157 0.89563 0.89088 0.88635 0.86767 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.14 -1.25 4.77 -27.89 -0.13 -1.38 16 3 C 0.51 6.86 7.70 -10.98 -0.08 6.78 16 4 O -0.54 -9.25 15.39 5.56 0.09 -9.17 16 5 N -0.61 -8.26 2.97 -172.79 -0.51 -8.77 16 6 C 0.10 1.03 6.33 -3.72 -0.02 1.01 16 7 C -0.13 -1.41 6.11 -26.45 -0.16 -1.58 16 8 C -0.10 -1.54 4.47 -26.52 -0.12 -1.66 16 9 C -0.12 -2.08 1.89 -91.66 -0.17 -2.25 16 10 H 0.09 1.48 7.57 -51.93 -0.39 1.09 16 11 C 0.47 10.98 5.21 -10.98 -0.06 10.92 16 12 O -0.54 -14.73 11.93 5.55 0.07 -14.66 16 13 N -0.44 -10.56 2.43 -107.72 -0.26 -10.83 16 14 C -0.34 -9.58 8.44 -14.93 -0.13 -9.70 16 15 H 0.10 2.81 7.22 -52.48 -0.38 2.44 16 16 C 0.09 2.67 5.01 -17.47 -0.09 2.58 16 17 N -0.87 -26.71 13.96 55.50 0.77 -25.94 16 18 Si 0.91 24.19 24.69 -169.99 -4.20 20.00 16 19 H -0.26 -7.20 6.50 56.52 0.37 -6.83 16 20 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 21 H -0.27 -6.97 6.64 56.52 0.38 -6.60 16 22 C 0.06 1.19 4.32 -67.92 -0.29 0.90 16 23 C -0.17 -3.19 9.83 -26.73 -0.26 -3.45 16 24 C -0.19 -3.69 9.45 -26.73 -0.25 -3.94 16 25 C 0.11 1.83 5.28 -3.73 -0.02 1.81 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.09 0.62 7.69 -51.93 -0.40 0.23 16 30 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 37 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 38 H 0.11 2.00 6.23 -51.93 -0.32 1.67 16 39 H 0.11 2.27 6.61 -51.92 -0.34 1.93 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 43 H 0.11 2.11 3.40 -51.93 -0.18 1.94 16 44 H 0.07 1.27 7.69 -51.92 -0.40 0.87 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -34.41 337.59 -7.38 -41.79 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.97 Total: 3.33 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.45 Total: -0.85 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.00 Total: -45.53 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.15 Total: -23.83 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.20 Total: 20.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.41 -7.38 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331978914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.554 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds