Wall clock time and date at job start Tue Mar 31 2020 08:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47125 * 2 1 4 4 O 1.21274 * 120.00339 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99755 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63249 * 0.02562 * 5 3 2 7 7 C 1.53184 * 108.89682 * 126.33832 * 6 5 3 8 8 C 1.53361 * 109.14672 * 54.57789 * 7 6 5 9 9 C 1.53041 * 109.60377 * 298.71280 * 8 7 6 10 10 H 1.09004 * 109.49782 * 301.41963 * 9 8 7 11 11 C 1.50706 * 109.52069 * 181.34448 * 9 8 7 12 12 O 1.21287 * 119.99720 * 0.14067 * 11 9 8 13 13 N 1.34771 * 120.00020 * 180.14675 * 11 9 8 14 14 C 1.37093 * 120.00116 * 179.97438 * 13 11 9 15 15 H 1.08005 * 120.00416 * 131.70012 * 14 13 11 16 16 C 1.38957 * 119.99965 * 311.69857 * 14 13 11 17 17 N 1.31405 * 119.99807 * 167.17260 * 16 14 13 18 18 Si 1.86797 * 119.99765 * 347.17193 * 16 14 13 19 19 H 1.48497 * 109.46883 * 94.66024 * 18 16 14 20 20 H 1.48495 * 109.47025 * 214.65787 * 18 16 14 21 21 H 1.48504 * 109.47376 * 334.66168 * 18 16 14 22 22 C 1.46508 * 119.99778 * 359.97438 * 13 11 9 23 23 C 1.53001 * 117.49733 * 186.70091 * 22 13 11 24 24 C 1.52997 * 60.00288 * 252.51761 * 23 22 13 25 25 C 1.46919 * 120.62622 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.47229 * 59.99829 * 1 2 3 27 27 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46784 * 299.99953 * 1 2 3 29 29 H 1.09006 * 109.47055 * 240.00006 * 2 1 3 30 30 H 1.09001 * 109.47229 * 120.00170 * 2 1 3 31 31 H 1.09000 * 109.58343 * 246.20486 * 6 5 3 32 32 H 1.09006 * 109.58662 * 6.48025 * 6 5 3 33 33 H 1.08999 * 109.49975 * 174.65413 * 7 6 5 34 34 H 1.09003 * 109.49756 * 294.75714 * 7 6 5 35 35 H 1.08997 * 109.41774 * 178.67896 * 8 7 6 36 36 H 1.08992 * 109.41948 * 58.74943 * 8 7 6 37 37 H 0.97001 * 120.00034 * 179.97438 * 17 16 14 38 38 H 1.08997 * 115.55174 * 332.41490 * 22 13 11 39 39 H 1.09009 * 117.49828 * 0.02562 * 23 22 13 40 40 H 1.08999 * 117.49865 * 145.01800 * 23 22 13 41 41 H 1.09002 * 117.49437 * 252.51704 * 24 23 22 42 42 H 1.08998 * 117.51908 * 107.48075 * 24 23 22 43 43 H 1.08994 * 109.59166 * 353.37786 * 25 5 3 44 44 H 1.09010 * 109.58705 * 113.66313 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3244 0.5608 0.0005 7 6 5.2979 0.7529 -1.1665 8 6 5.9319 2.1459 -1.0687 9 6 4.8407 3.2146 -1.1653 10 1 4.3050 3.1034 -2.1081 11 6 5.4690 4.5830 -1.1022 12 8 6.6719 4.6935 -0.9935 13 7 4.6942 5.6838 -1.1665 14 6 5.2657 6.9286 -1.1086 15 1 4.9908 7.6832 -1.8307 16 6 6.1986 7.2195 -0.1207 17 7 6.9294 8.3081 -0.2073 18 14 6.4137 6.0630 1.3303 19 1 7.5226 5.1163 1.0486 20 1 6.7328 6.8507 2.5480 21 1 5.1569 5.3025 1.5479 22 6 3.2412 5.5502 -1.2983 23 6 2.4318 6.8289 -1.5238 24 6 2.3747 6.1160 -0.1713 25 6 3.8624 3.0467 0.0011 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.8765 0.5582 0.9404 32 1 3.7967 -0.3858 -0.1158 33 1 6.0763 -0.0088 -1.1202 34 1 4.7577 0.6648 -2.1092 35 1 6.6431 2.2784 -1.8840 36 1 6.4507 2.2418 -0.1150 37 1 7.5804 8.5114 0.4825 38 1 2.8954 4.6417 -1.7914 39 1 2.9804 7.7695 -1.5746 40 1 1.5534 6.7619 -2.1657 41 1 1.4586 5.5799 0.0767 42 1 2.8857 6.5872 0.6683 43 1 3.0301 3.7405 -0.1174 44 1 4.3747 3.2480 0.9420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331978914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:14 Heat of formation + Delta-G solvation = -57.598506 kcal Electronic energy + Delta-G solvation = -25700.245113 eV Core-core repulsion = 22231.854105 eV Total energy + Delta-G solvation = -3468.391009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79105 -40.63381 -38.47690 -37.92359 -35.05322 -34.26919 -33.50747 -33.34565 -32.14510 -27.47227 -26.97886 -25.20902 -24.21620 -23.48079 -22.91265 -22.20047 -20.79967 -19.83429 -18.90411 -18.17058 -17.96087 -17.41928 -16.92532 -16.66109 -16.03954 -15.86082 -15.33631 -15.21310 -15.16025 -15.00385 -14.59788 -14.49830 -14.19262 -13.75855 -13.67852 -13.45449 -13.12815 -12.98938 -12.66515 -12.56793 -12.41955 -12.26694 -12.08607 -11.96389 -11.95046 -11.83531 -11.73366 -11.47115 -11.29708 -10.90661 -10.82308 -10.42322 -9.67922 -9.39241 -8.47350 -6.30296 1.12630 1.24194 1.36889 1.65339 1.77061 2.01934 2.30242 2.56762 2.87456 3.14529 3.53374 3.61037 3.79516 3.84771 3.95756 4.04447 4.07033 4.14587 4.19054 4.22268 4.26575 4.33075 4.50415 4.60190 4.69447 4.76540 4.80716 4.82445 4.89914 4.91752 5.02738 5.09102 5.12668 5.14316 5.18625 5.37610 5.38463 5.39142 5.48311 5.65166 5.84243 6.46195 6.67336 6.84429 7.20483 7.25025 7.78091 8.61565 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.006225 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.166007 B = 4496.605415 C = 5307.510426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.502 3.498 4 O -0.583 6.583 5 N -0.610 5.610 6 C 0.098 3.902 7 C -0.122 4.122 8 C -0.101 4.101 9 C -0.104 4.104 10 H 0.106 0.894 11 C 0.459 3.541 12 O -0.583 6.583 13 N -0.451 5.451 14 C -0.331 4.331 15 H 0.069 0.931 16 C 0.044 3.956 17 N -0.914 5.914 18 Si 0.954 3.046 19 H -0.278 1.278 20 H -0.303 1.303 21 H -0.260 1.260 22 C 0.049 3.951 23 C -0.162 4.162 24 C -0.184 4.184 25 C 0.114 3.886 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.273 0.727 38 H 0.136 0.864 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 -22.755 0.121 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.293 3.707 4 O -0.463 6.463 5 N -0.343 5.343 6 C -0.023 4.023 7 C -0.160 4.160 8 C -0.139 4.139 9 C -0.127 4.127 10 H 0.124 0.876 11 C 0.249 3.751 12 O -0.468 6.468 13 N -0.172 5.172 14 C -0.459 4.459 15 H 0.087 0.913 16 C -0.160 4.160 17 N -0.551 5.551 18 Si 0.784 3.216 19 H -0.205 1.205 20 H -0.232 1.232 21 H -0.185 1.185 22 C -0.055 4.055 23 C -0.200 4.200 24 C -0.223 4.223 25 C -0.010 4.010 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.153 0.847 39 H 0.101 0.899 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.159 -22.092 0.235 24.751 hybrid contribution 0.867 0.891 0.712 1.432 sum -10.292 -21.201 0.947 23.587 Atomic orbital electron populations 1.21545 0.93499 1.02644 1.01774 1.21750 0.98039 0.90810 1.06720 1.21746 0.80937 0.93550 0.74471 1.90675 1.55711 1.48347 1.51556 1.48311 1.06518 1.06462 1.73050 1.22146 0.90962 0.89916 0.99322 1.21991 0.99486 0.95172 0.99374 1.21408 0.96085 0.94260 1.02180 1.21569 0.98264 0.91760 1.01060 0.87564 1.21187 0.87070 0.87209 0.79595 1.90499 1.16307 1.86967 1.52999 1.43340 1.04263 1.04619 1.64965 1.18629 1.23900 0.89674 1.13655 0.91283 1.25941 0.94379 0.96114 0.99533 1.69773 1.22400 1.27718 1.35251 0.85622 0.79424 0.79199 0.77397 1.20487 1.23167 1.18468 1.22088 0.80050 0.99144 1.04242 1.23178 1.01460 0.96048 0.99293 1.23216 1.01694 1.04684 0.92683 1.21584 0.97761 0.85578 0.96094 0.93553 0.89398 0.93851 0.85885 0.86339 0.90874 0.85117 0.87401 0.90121 0.91945 0.93310 0.91766 0.84653 0.89894 0.85667 0.86640 0.91162 0.88096 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.20 71.98 0.66 -1.26 16 2 C -0.13 -1.63 4.77 29.85 0.14 -1.49 16 3 C 0.50 11.75 7.70 87.65 0.67 12.42 16 4 O -0.58 -18.84 15.39 -3.01 -0.05 -18.88 16 5 N -0.61 -14.38 2.97 -818.99 -2.44 -16.81 16 6 C 0.10 1.45 6.33 86.36 0.55 2.00 16 7 C -0.12 -2.03 6.11 30.78 0.19 -1.84 16 8 C -0.10 -2.96 4.47 30.73 0.14 -2.82 16 9 C -0.10 -3.60 1.89 -11.47 -0.02 -3.63 16 10 H 0.11 3.30 7.57 -2.39 -0.02 3.28 16 11 C 0.46 21.87 5.21 87.66 0.46 22.32 16 12 O -0.58 -32.73 11.93 -3.05 -0.04 -32.77 16 13 N -0.45 -22.19 2.43 -613.10 -1.49 -23.68 16 14 C -0.33 -19.38 8.44 84.04 0.71 -18.67 16 15 H 0.07 4.32 7.22 -2.91 -0.02 4.30 16 16 C 0.04 2.70 5.01 84.93 0.43 3.13 16 17 N -0.91 -58.59 13.96 21.66 0.30 -58.28 16 18 Si 0.95 51.90 24.69 68.60 1.69 53.59 16 19 H -0.28 -15.90 6.50 99.48 0.65 -15.26 16 20 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 21 H -0.26 -13.26 6.64 99.48 0.66 -12.60 16 22 C 0.05 1.93 4.32 44.99 0.19 2.12 16 23 C -0.16 -5.88 9.83 30.59 0.30 -5.58 16 24 C -0.18 -6.84 9.45 30.60 0.29 -6.55 16 25 C 0.11 3.74 5.28 86.35 0.46 4.20 16 26 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.76 8.10 -2.39 -0.02 0.75 16 29 H 0.12 0.81 7.69 -2.38 -0.02 0.79 16 30 H 0.12 0.87 7.94 -2.39 -0.02 0.85 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 0.81 5.93 -2.38 -0.01 0.79 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 36 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 37 H 0.27 16.54 8.31 -92.71 -0.77 15.77 16 38 H 0.14 4.63 6.23 -2.39 -0.01 4.61 16 39 H 0.08 3.50 6.61 -2.38 -0.02 3.49 16 40 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.12 3.74 8.14 -2.39 -0.02 3.73 16 42 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.10 3.60 3.40 -2.39 -0.01 3.59 16 44 H 0.04 1.61 7.69 -2.38 -0.02 1.60 16 Total: -1.00 -81.14 337.59 4.03 -77.11 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.88 Total: 15.38 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.16 Total: 4.34 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -3.62 Total: -98.77 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.08 Total: -51.65 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.69 Total: 53.59 kcal Total: -81.14 4.03 -77.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331978914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.511 kcal (2) G-P(sol) polarization free energy of solvation -81.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds