Wall clock time and date at job start Tue Mar 31 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 H 1.09001 * 109.47640 * 183.50613 * 3 2 1 5 5 O 1.42897 * 109.47481 * 63.50306 * 3 2 1 6 6 C 1.42898 * 114.00345 * 154.51918 * 5 3 2 7 7 C 1.53001 * 109.47191 * 145.48516 * 6 5 3 8 8 C 1.53004 * 109.46908 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47241 * 299.99921 * 8 7 6 10 10 C 1.52995 * 109.46635 * 60.00094 * 9 8 7 11 11 C 1.52998 * 109.47547 * 299.99534 * 10 9 8 12 12 C 1.50703 * 109.47184 * 303.50314 * 3 2 1 13 13 O 1.21295 * 120.00154 * 108.80467 * 12 3 2 14 14 N 1.34776 * 119.99890 * 288.81186 * 12 3 2 15 15 C 1.37101 * 119.99859 * 185.84070 * 14 12 3 16 16 H 1.07999 * 120.00254 * 7.92491 * 15 14 12 17 17 C 1.38956 * 119.99811 * 187.92698 * 15 14 12 18 18 N 1.31413 * 120.00198 * 7.62675 * 17 15 14 19 19 Si 1.86794 * 119.99838 * 187.62793 * 17 15 14 20 20 H 1.48502 * 109.47182 * 89.99773 * 19 17 15 21 21 H 1.48501 * 109.47037 * 209.99901 * 19 17 15 22 22 H 1.48500 * 109.47288 * 330.00236 * 19 17 15 23 23 C 1.46501 * 120.00265 * 5.83553 * 14 12 3 24 24 C 1.47200 * 109.46891 * 94.95040 * 23 14 12 25 25 N 3.55339 * 89.12647 * 247.36771 * 2 1 3 26 26 H 1.09004 * 109.46874 * 185.05469 * 1 2 3 27 27 H 1.08992 * 109.47077 * 305.05920 * 1 2 3 28 28 H 1.09002 * 109.46557 * 65.05853 * 1 2 3 29 29 H 1.08994 * 109.47900 * 239.99911 * 2 1 3 30 30 H 1.09002 * 109.46967 * 119.99436 * 2 1 3 31 31 H 1.09000 * 109.47285 * 25.48435 * 6 5 3 32 32 H 1.08994 * 109.47341 * 60.00453 * 7 6 5 33 33 H 1.09005 * 109.47230 * 300.00055 * 7 6 5 34 34 H 1.08994 * 109.47227 * 60.00359 * 8 7 6 35 35 H 1.09004 * 109.47008 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.46774 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.46953 * 300.00374 * 9 8 7 38 38 H 1.09005 * 109.46760 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47222 * 60.00444 * 10 9 8 40 40 H 1.09000 * 109.47603 * 300.00677 * 11 10 9 41 41 H 1.09003 * 109.47335 * 179.97438 * 11 10 9 42 42 H 0.96994 * 120.00391 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.47640 * 214.94890 * 23 14 12 44 44 H 1.08999 * 109.46691 * 334.95286 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4432 -0.0628 5 8 1.6321 2.0920 1.2057 6 6 2.4756 3.1777 1.5951 7 6 1.6301 4.2697 2.2536 8 6 2.5333 5.4325 2.6699 9 6 3.5836 4.9320 3.6636 10 6 4.4290 3.8401 3.0050 11 6 3.5260 2.6773 2.5888 12 6 1.4680 2.1775 -1.1848 13 8 0.6213 3.0300 -1.0186 14 7 1.8973 1.8877 -2.4290 15 6 1.4672 2.6359 -3.4943 16 1 0.8892 3.5326 -3.3260 17 6 1.7749 2.2406 -4.7904 18 7 2.3459 1.0765 -5.0042 19 14 1.3770 3.3640 -6.2287 20 1 2.5325 4.2586 -6.4926 21 1 1.1002 2.5439 -7.4354 22 1 0.1819 4.1825 -5.9017 23 6 2.8236 0.7730 -2.6433 24 6 2.0629 -0.4349 -3.0023 25 7 1.4758 -1.3672 -3.2794 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3633 0.5903 0.8411 28 1 -0.3632 0.4334 -0.9319 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9735 3.5848 0.7151 32 1 1.1324 3.8627 3.1337 33 1 0.8821 4.6266 1.5455 34 1 3.0307 5.8395 1.7896 35 1 1.9308 6.2107 3.1386 36 1 4.2266 5.7605 3.9605 37 1 3.0861 4.5250 4.5439 38 1 5.1776 3.4838 3.7128 39 1 4.9265 4.2470 2.1247 40 1 3.0285 2.2703 3.4691 41 1 4.1283 1.8995 2.1192 42 1 2.5610 0.8006 -5.9089 43 1 3.5117 1.0225 -3.4509 44 1 3.3878 0.5888 -1.7291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346772754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:52 Heat of formation + Delta-G solvation = -58.768901 kcal Electronic energy + Delta-G solvation = -25252.639391 eV Core-core repulsion = 21784.197630 eV Total energy + Delta-G solvation = -3468.441761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.74746 -38.42507 -36.35770 -35.62055 -34.24567 -33.15761 -31.59657 -30.70678 -29.37092 -27.65184 -26.65598 -24.53333 -22.52748 -22.15327 -21.72336 -19.73553 -19.25848 -18.00709 -16.71286 -16.37019 -16.07399 -15.47346 -14.92138 -14.63017 -14.20837 -14.11701 -14.00803 -13.70893 -13.46954 -12.93482 -12.88918 -12.69109 -12.44360 -12.24751 -12.12690 -11.85185 -11.55116 -11.32738 -11.25196 -11.20499 -11.06060 -10.91038 -10.74026 -10.62719 -10.54840 -10.44692 -10.41342 -10.36314 -10.17085 -10.12438 -9.46654 -9.29616 -8.26145 -8.14845 -6.43687 -4.02272 3.08013 3.19879 3.24155 3.51923 3.75664 3.89807 4.05144 4.14311 4.75361 4.76910 4.82739 4.90318 4.97461 5.19754 5.24916 5.28157 5.32258 5.43750 5.50453 5.55215 5.55562 5.59306 5.66201 5.71421 5.84999 5.96902 6.01970 6.03880 6.07211 6.13938 6.19839 6.24946 6.30554 6.35713 6.47239 6.53728 6.57160 6.80218 6.83179 7.42994 7.52210 7.86352 8.28979 8.81190 8.99060 9.18096 9.70957 10.53905 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.005120 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.303657 B = 5466.958739 C = 6313.599322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.080 3.920 4 H 0.071 0.929 5 O -0.350 6.350 6 C 0.093 3.907 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.139 4.139 12 C 0.436 3.564 13 O -0.558 6.558 14 N -0.449 5.449 15 C -0.296 4.296 16 H 0.109 0.891 17 C 0.026 3.974 18 N -0.896 5.896 19 Si 0.936 3.064 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.212 3.788 24 C 0.257 3.743 25 N -0.483 5.483 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.273 0.727 43 H 0.149 0.851 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.056 3.488 12.805 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.088 0.912 5 O -0.267 6.267 6 C 0.035 3.965 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.158 4.158 10 C -0.154 4.154 11 C -0.177 4.177 12 C 0.224 3.776 13 O -0.439 6.439 14 N -0.171 5.171 15 C -0.423 4.423 16 H 0.127 0.873 17 C -0.175 4.175 18 N -0.538 5.538 19 Si 0.763 3.237 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C 0.085 3.915 24 C -0.060 4.060 25 N -0.164 5.164 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.166 0.834 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.642 2.427 12.416 13.852 hybrid contribution 0.318 0.746 -1.075 1.346 sum 5.961 3.173 11.341 13.199 Atomic orbital electron populations 1.21616 0.94709 1.00756 1.02956 1.21705 0.98099 0.93120 1.02701 1.22041 0.97865 0.93053 0.85228 0.91175 1.87937 1.52892 1.46880 1.39016 1.22044 0.90785 0.87445 0.96219 1.21556 0.98285 0.94453 1.00931 1.21512 0.97242 0.97539 0.99161 1.21566 0.97601 0.98139 0.98493 1.21491 0.97656 0.95803 1.00493 1.22053 0.97496 0.98025 1.00157 1.20668 0.85610 0.87122 0.84196 1.90549 1.32793 1.35693 1.84825 1.43745 1.40629 1.26735 1.06007 1.19864 1.32598 1.06299 0.83579 0.87295 1.25258 0.96865 0.96481 0.98864 1.69696 1.42993 1.18739 1.22421 0.85746 0.79005 0.79250 0.79722 1.20178 1.20934 1.19454 1.19236 0.91080 0.79528 1.01665 1.29119 0.93569 0.93124 0.90175 1.80912 1.08829 1.14198 1.12445 0.93404 0.91832 0.92430 0.90285 0.91034 0.92154 0.91687 0.90534 0.91843 0.91782 0.92218 0.92026 0.91988 0.91893 0.91336 0.91931 0.91594 0.83401 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.45 37.16 0.35 -2.29 16 2 C -0.12 -2.00 5.60 -26.73 -0.15 -2.15 16 3 C 0.08 1.43 1.81 -27.88 -0.05 1.37 16 4 H 0.07 1.08 6.76 -51.93 -0.35 0.73 16 5 O -0.35 -6.18 8.59 -54.89 -0.47 -6.66 16 6 C 0.09 1.39 2.39 -26.73 -0.06 1.33 16 7 C -0.11 -1.61 5.57 -26.73 -0.15 -1.75 16 8 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 9 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 10 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 11 C -0.14 -1.65 5.57 -26.73 -0.15 -1.80 16 12 C 0.44 9.81 5.42 -10.98 -0.06 9.75 16 13 O -0.56 -14.50 16.16 -14.11 -0.23 -14.73 16 14 N -0.45 -10.38 2.60 -117.93 -0.31 -10.69 16 15 C -0.30 -7.58 9.49 -14.93 -0.14 -7.72 16 16 H 0.11 2.95 7.23 -52.49 -0.38 2.57 16 17 C 0.03 0.63 5.31 -17.46 -0.09 0.54 16 18 N -0.90 -21.93 8.21 55.50 0.46 -21.47 16 19 Si 0.94 19.93 29.56 -169.99 -5.02 14.91 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 23 C 0.21 4.26 4.76 -6.83 -0.03 4.23 16 24 C 0.26 5.71 10.95 -20.76 -0.23 5.48 16 25 N -0.48 -11.46 18.54 42.16 0.78 -10.68 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.17 7.64 -51.93 -0.40 0.77 16 28 H 0.06 1.26 7.31 -51.93 -0.38 0.88 16 29 H 0.08 1.39 3.97 -51.93 -0.21 1.18 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.98 7.64 -51.93 -0.40 0.58 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 43 H 0.15 3.08 6.00 -51.93 -0.31 2.77 16 44 H 0.07 1.13 5.48 -51.93 -0.28 0.85 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -29.46 347.13 -7.72 -37.18 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.91 Total: 4.02 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.24 Total: 2.88 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.93 Total: -42.84 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.70 Total: -21.39 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.46 -7.72 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346772754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.589 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds