Wall clock time and date at job start Tue Mar 31 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 H 1.09001 * 109.47640 * 183.50613 * 3 2 1 5 5 O 1.42897 * 109.47481 * 63.50306 * 3 2 1 6 6 C 1.42898 * 114.00345 * 154.51918 * 5 3 2 7 7 C 1.53001 * 109.47191 * 145.48516 * 6 5 3 8 8 C 1.53004 * 109.46908 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47241 * 299.99921 * 8 7 6 10 10 C 1.52995 * 109.46635 * 60.00094 * 9 8 7 11 11 C 1.52998 * 109.47547 * 299.99534 * 10 9 8 12 12 C 1.50703 * 109.47184 * 303.50314 * 3 2 1 13 13 O 1.21295 * 120.00154 * 108.80467 * 12 3 2 14 14 N 1.34776 * 119.99890 * 288.81186 * 12 3 2 15 15 C 1.37101 * 119.99859 * 185.84070 * 14 12 3 16 16 H 1.07999 * 120.00254 * 7.92491 * 15 14 12 17 17 C 1.38956 * 119.99811 * 187.92698 * 15 14 12 18 18 N 1.31413 * 120.00198 * 7.62675 * 17 15 14 19 19 Si 1.86794 * 119.99838 * 187.62793 * 17 15 14 20 20 H 1.48502 * 109.47182 * 89.99773 * 19 17 15 21 21 H 1.48501 * 109.47037 * 209.99901 * 19 17 15 22 22 H 1.48500 * 109.47288 * 330.00236 * 19 17 15 23 23 C 1.46501 * 120.00265 * 5.83553 * 14 12 3 24 24 C 1.47200 * 109.46891 * 94.95040 * 23 14 12 25 25 N 3.55339 * 89.12647 * 247.36771 * 2 1 3 26 26 H 1.09004 * 109.46874 * 185.05469 * 1 2 3 27 27 H 1.08992 * 109.47077 * 305.05920 * 1 2 3 28 28 H 1.09002 * 109.46557 * 65.05853 * 1 2 3 29 29 H 1.08994 * 109.47900 * 239.99911 * 2 1 3 30 30 H 1.09002 * 109.46967 * 119.99436 * 2 1 3 31 31 H 1.09000 * 109.47285 * 25.48435 * 6 5 3 32 32 H 1.08994 * 109.47341 * 60.00453 * 7 6 5 33 33 H 1.09005 * 109.47230 * 300.00055 * 7 6 5 34 34 H 1.08994 * 109.47227 * 60.00359 * 8 7 6 35 35 H 1.09004 * 109.47008 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.46774 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.46953 * 300.00374 * 9 8 7 38 38 H 1.09005 * 109.46760 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47222 * 60.00444 * 10 9 8 40 40 H 1.09000 * 109.47603 * 300.00677 * 11 10 9 41 41 H 1.09003 * 109.47335 * 179.97438 * 11 10 9 42 42 H 0.96994 * 120.00391 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.47640 * 214.94890 * 23 14 12 44 44 H 1.08999 * 109.46691 * 334.95286 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4432 -0.0628 5 8 1.6321 2.0920 1.2057 6 6 2.4756 3.1777 1.5951 7 6 1.6301 4.2697 2.2536 8 6 2.5333 5.4325 2.6699 9 6 3.5836 4.9320 3.6636 10 6 4.4290 3.8401 3.0050 11 6 3.5260 2.6773 2.5888 12 6 1.4680 2.1775 -1.1848 13 8 0.6213 3.0300 -1.0186 14 7 1.8973 1.8877 -2.4290 15 6 1.4672 2.6359 -3.4943 16 1 0.8892 3.5326 -3.3260 17 6 1.7749 2.2406 -4.7904 18 7 2.3459 1.0765 -5.0042 19 14 1.3770 3.3640 -6.2287 20 1 2.5325 4.2586 -6.4926 21 1 1.1002 2.5439 -7.4354 22 1 0.1819 4.1825 -5.9017 23 6 2.8236 0.7730 -2.6433 24 6 2.0629 -0.4349 -3.0023 25 7 1.4758 -1.3672 -3.2794 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3633 0.5903 0.8411 28 1 -0.3632 0.4334 -0.9319 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9735 3.5848 0.7151 32 1 1.1324 3.8627 3.1337 33 1 0.8821 4.6266 1.5455 34 1 3.0307 5.8395 1.7896 35 1 1.9308 6.2107 3.1386 36 1 4.2266 5.7605 3.9605 37 1 3.0861 4.5250 4.5439 38 1 5.1776 3.4838 3.7128 39 1 4.9265 4.2470 2.1247 40 1 3.0285 2.2703 3.4691 41 1 4.1283 1.8995 2.1192 42 1 2.5610 0.8006 -5.9089 43 1 3.5117 1.0225 -3.4509 44 1 3.3878 0.5888 -1.7291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346772754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:52 Heat of formation + Delta-G solvation = -74.171291 kcal Electronic energy + Delta-G solvation = -25253.307289 eV Core-core repulsion = 21784.197630 eV Total energy + Delta-G solvation = -3469.109659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29723 -39.69331 -37.79855 -37.27371 -36.08074 -34.61858 -33.40176 -31.63393 -30.42085 -29.38530 -28.23442 -26.29157 -23.47315 -23.25506 -23.16934 -20.93817 -20.63202 -19.84611 -18.24465 -18.01348 -17.56834 -16.94465 -16.48548 -15.81938 -15.78373 -15.39233 -15.33619 -15.04834 -14.87473 -14.44681 -14.21101 -14.06781 -13.72132 -13.66161 -13.56753 -13.33071 -13.06384 -13.04650 -12.95621 -12.63854 -12.33783 -12.20446 -12.17406 -12.14306 -11.99963 -11.91342 -11.71899 -11.66265 -11.35270 -11.18706 -11.14906 -10.69176 -10.03659 -9.91508 -8.32196 -5.97784 1.35632 1.43185 1.52768 1.78660 2.03023 2.28958 2.33183 2.63404 3.01514 3.12729 3.63665 3.78862 3.82887 3.90938 3.92154 4.03392 4.10380 4.26818 4.34242 4.36431 4.43850 4.51627 4.55292 4.62759 4.65346 4.77913 4.84205 4.95309 4.97214 5.08820 5.13132 5.15006 5.19698 5.27213 5.29131 5.33471 5.37522 5.44303 5.47403 5.56824 5.92958 6.26633 6.45645 7.04955 7.11137 7.34554 7.90115 8.61135 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.005120 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.303657 B = 5466.958739 C = 6313.599322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.088 3.912 4 H 0.105 0.895 5 O -0.364 6.364 6 C 0.085 3.915 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.115 4.115 11 C -0.131 4.131 12 C 0.431 3.569 13 O -0.605 6.605 14 N -0.458 5.458 15 C -0.326 4.326 16 H 0.080 0.920 17 C 0.001 3.999 18 N -0.901 5.901 19 Si 0.988 3.012 20 H -0.260 1.260 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.213 3.787 24 C 0.268 3.732 25 N -0.513 5.513 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.012 0.988 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.274 0.726 43 H 0.145 0.855 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.303 2.993 14.345 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C 0.027 3.973 4 H 0.122 0.878 5 O -0.282 6.282 6 C 0.028 3.972 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.169 4.169 12 C 0.220 3.780 13 O -0.489 6.489 14 N -0.180 5.180 15 C -0.454 4.454 16 H 0.098 0.902 17 C -0.198 4.198 18 N -0.542 5.542 19 Si 0.813 3.187 20 H -0.185 1.185 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.087 3.913 24 C -0.049 4.049 25 N -0.195 5.195 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.162 0.838 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.921 1.914 13.960 16.165 hybrid contribution -0.451 0.934 -1.544 1.860 sum 7.470 2.848 12.416 14.768 Atomic orbital electron populations 1.21547 0.96302 1.01335 1.00316 1.21735 0.96608 0.92575 1.04273 1.22032 0.99316 0.92751 0.83229 0.87791 1.87926 1.54326 1.47584 1.38372 1.22280 0.91342 0.87069 0.96514 1.21556 0.98122 0.95455 1.00040 1.21505 0.97446 0.96600 0.99572 1.21562 0.97182 0.98752 0.97928 1.21517 0.97684 0.95111 1.00985 1.21996 0.96710 0.98989 0.99222 1.21653 0.84712 0.86410 0.85204 1.90515 1.34900 1.37791 1.85661 1.43891 1.41118 1.27202 1.05814 1.19707 1.33950 1.06583 0.85131 0.90176 1.25817 0.96376 0.97530 1.00122 1.69797 1.42595 1.19021 1.22803 0.84975 0.78742 0.77872 0.77071 1.18473 1.20779 1.20764 1.19461 0.90211 0.77730 1.03935 1.29511 0.93004 0.93049 0.89287 1.80909 1.09633 1.15387 1.13563 0.91561 0.92209 0.96845 0.90728 0.87138 0.93949 0.91167 0.94320 0.92636 0.90737 0.90378 0.91294 0.89728 0.92142 0.90844 0.90899 0.91499 0.83832 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 9.45 71.98 0.68 -4.36 16 2 C -0.11 -3.61 5.60 30.59 0.17 -3.44 16 3 C 0.09 3.03 1.81 29.85 0.05 3.08 16 4 H 0.10 2.86 6.76 -2.39 -0.02 2.84 16 5 O -0.36 -12.58 8.59 -130.19 -1.12 -13.70 16 6 C 0.09 2.48 2.39 30.60 0.07 2.56 16 7 C -0.11 -3.22 5.57 30.60 0.17 -3.05 16 8 C -0.11 -2.43 5.92 30.60 0.18 -2.25 16 9 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 10 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 11 C -0.13 -2.72 5.57 30.59 0.17 -2.55 16 12 C 0.43 19.69 5.42 87.66 0.48 20.17 16 13 O -0.60 -33.04 16.16 15.72 0.25 -32.79 16 14 N -0.46 -21.44 2.60 -645.41 -1.68 -23.11 16 15 C -0.33 -17.17 9.49 84.04 0.80 -16.37 16 16 H 0.08 4.60 7.23 -2.91 -0.02 4.58 16 17 C 0.00 0.06 5.31 84.93 0.45 0.51 16 18 N -0.90 -43.69 8.21 21.67 0.18 -43.51 16 19 Si 0.99 41.10 29.56 68.60 2.03 43.12 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 C 0.21 8.30 4.76 84.57 0.40 8.70 16 24 C 0.27 11.67 10.95 89.44 0.98 12.65 16 25 N -0.51 -24.10 18.54 20.01 0.37 -23.73 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.19 7.64 -2.39 -0.02 2.17 16 28 H 0.01 0.57 7.31 -2.39 -0.02 0.55 16 29 H 0.07 2.45 3.97 -2.39 -0.01 2.44 16 30 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.04 1.37 7.64 -2.39 -0.02 1.35 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 43 H 0.14 5.81 6.00 -2.39 -0.01 5.79 16 44 H 0.12 3.46 5.48 -2.39 -0.01 3.45 16 Total: -1.00 -66.53 347.13 5.99 -60.54 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.99 Total: 21.01 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.97 Total: 12.17 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -1.13 Total: -90.36 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.86 Total: -46.49 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -66.53 5.99 -60.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346772754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.633 kcal (2) G-P(sol) polarization free energy of solvation -66.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds