Wall clock time and date at job start Tue Mar 31 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 N 1.46498 * 109.47598 * 184.89702 * 3 2 1 5 5 C 1.34534 * 126.68387 * 275.77517 * 4 3 2 6 6 O 1.21534 * 123.77685 * 359.94280 * 5 4 3 7 7 N 1.33799 * 112.45295 * 180.12082 * 5 4 3 8 8 C 1.46497 * 124.17863 * 179.85758 * 7 5 4 9 9 C 1.52998 * 109.47522 * 271.66886 * 8 7 5 10 10 C 1.50698 * 115.54914 * 174.20538 * 9 8 7 11 11 H 1.08008 * 119.99590 * 219.21895 * 10 9 8 12 12 C 1.37879 * 120.00192 * 39.22281 * 10 9 8 13 13 N 1.31510 * 119.99745 * 7.17057 * 12 10 9 14 14 Si 1.86799 * 120.00033 * 187.16873 * 12 10 9 15 15 H 1.48489 * 109.46978 * 179.97438 * 14 12 10 16 16 H 1.48506 * 109.46959 * 300.00100 * 14 12 10 17 17 H 1.48498 * 109.46887 * 59.99514 * 14 12 10 18 18 C 1.53004 * 117.51636 * 319.90670 * 9 8 7 19 19 C 1.53004 * 60.00011 * 107.47948 * 18 9 8 20 20 C 1.34771 * 111.64031 * 359.59910 * 7 5 4 21 21 O 1.21237 * 127.15222 * 180.26578 * 20 7 5 22 22 C 1.47305 * 126.69472 * 95.45830 * 4 3 2 23 23 H 1.09005 * 110.59656 * 61.51448 * 22 4 3 24 24 C 1.52997 * 110.60007 * 298.57247 * 22 4 3 25 25 C 1.53001 * 109.46940 * 179.64772 * 24 22 4 26 26 H 1.08999 * 109.47156 * 299.99859 * 1 2 3 27 27 H 1.09002 * 109.47163 * 60.00103 * 1 2 3 28 28 H 1.08995 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47156 * 240.00141 * 2 1 3 30 30 H 1.09002 * 109.47163 * 119.99897 * 2 1 3 31 31 H 1.09003 * 109.46975 * 64.89180 * 3 2 1 32 32 H 1.08998 * 109.47238 * 304.89876 * 3 2 1 33 33 H 1.08998 * 109.46770 * 151.66257 * 8 7 5 34 34 H 1.09001 * 109.46737 * 31.66775 * 8 7 5 35 35 H 0.96994 * 120.00036 * 175.00174 * 13 12 10 36 36 H 1.08999 * 117.49660 * 214.96900 * 18 9 8 37 37 H 1.08996 * 117.49903 * 359.97438 * 18 9 8 38 38 H 1.08999 * 117.49927 * 252.51387 * 19 18 9 39 39 H 1.08995 * 117.51926 * 107.47819 * 19 18 9 40 40 H 1.09004 * 109.46981 * 299.64127 * 24 22 4 41 41 H 1.08995 * 109.47832 * 59.64288 * 24 22 4 42 42 H 1.09007 * 109.46554 * 185.99508 * 25 24 22 43 43 H 1.09002 * 109.47033 * 305.98699 * 25 24 22 44 44 H 1.08992 * 109.47638 * 65.99479 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4443 -0.1179 5 6 4.3876 1.3062 0.8838 6 8 4.0741 1.1590 2.0488 7 7 5.6541 1.3527 0.4547 8 6 6.8240 1.2323 1.3282 9 6 7.2158 2.6163 1.8496 10 6 8.3229 2.6362 2.8718 11 1 8.2715 3.3151 3.7103 12 6 9.4014 1.7879 2.7366 13 7 9.5357 1.0636 1.6472 14 14 10.6717 1.6674 4.1009 15 1 11.7227 0.6925 3.7138 16 1 11.2889 3.0000 4.3217 17 1 10.0129 1.2138 5.3520 18 6 7.1375 3.7890 0.8700 19 6 6.1046 3.6585 1.9912 20 6 5.7204 1.5185 -0.8812 21 8 6.7215 1.5931 -1.5609 22 6 4.2831 1.5911 -1.3570 23 1 4.0825 2.5547 -1.8254 24 6 3.9780 0.4465 -2.3253 25 6 4.7969 0.6290 -3.6048 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7500 1.9304 0.9306 32 1 1.6068 1.9810 -0.8428 33 1 7.6551 0.8072 0.7656 34 1 6.5840 0.5818 2.1692 35 1 10.3302 0.5219 1.5198 36 1 7.8868 4.5749 0.9650 37 1 6.8072 3.5746 -0.1463 38 1 5.0945 3.3582 1.7126 39 1 6.1741 4.3583 2.8240 40 1 4.2396 -0.5034 -1.8590 41 1 2.9159 0.4507 -2.5700 42 1 4.5019 -0.1243 -4.3354 43 1 4.6149 1.6228 -4.0140 44 1 5.8569 0.5184 -3.3767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348724655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:28 Heat of formation + Delta-G solvation = -21.887912 kcal Electronic energy + Delta-G solvation = -25446.445199 eV Core-core repulsion = 21979.602718 eV Total energy + Delta-G solvation = -3466.842481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05838 -38.15772 -37.25648 -35.94120 -34.94277 -33.77710 -32.22631 -32.06451 -28.23517 -26.42399 -25.84208 -25.06626 -22.99677 -21.84397 -21.45067 -20.77884 -20.03118 -18.86890 -17.08443 -16.81822 -16.35455 -15.84109 -15.48027 -14.91113 -14.75008 -14.51155 -14.32559 -14.13447 -13.85707 -13.36077 -13.08443 -12.87366 -12.56485 -12.35030 -12.24854 -11.98027 -11.88601 -11.72297 -11.53824 -11.38051 -11.17886 -10.96245 -10.86023 -10.79335 -10.48259 -10.24954 -10.14261 -9.97935 -9.52028 -9.04863 -8.94001 -8.79102 -8.51361 -8.06500 -6.09857 -4.14149 2.13949 2.54400 3.28719 3.34173 3.37194 3.40431 3.57929 4.30129 4.35998 4.62716 4.71918 4.87129 4.91461 4.99173 5.09049 5.15876 5.24898 5.32969 5.46197 5.52202 5.58353 5.63969 5.78523 5.80988 5.88132 5.98443 6.07620 6.10416 6.16045 6.24675 6.32289 6.44887 6.48114 6.67506 6.75009 6.82701 7.05277 7.14455 7.35717 7.51384 7.76772 7.90979 7.97651 8.33337 8.63554 8.83577 9.46464 10.94091 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.004990 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.869799 B = 5610.274094 C = 6253.717778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.154 3.846 4 N -0.632 5.632 5 C 0.697 3.303 6 O -0.540 6.540 7 N -0.567 5.567 8 C 0.151 3.849 9 C 0.045 3.955 10 C -0.486 4.486 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.902 3.098 15 H -0.285 1.285 16 H -0.276 1.276 17 H -0.274 1.274 18 C -0.200 4.200 19 C -0.205 4.205 20 C 0.522 3.478 21 O -0.459 6.459 22 C 0.089 3.911 23 H 0.117 0.883 24 C -0.115 4.115 25 C -0.157 4.157 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 -2.143 -9.255 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.033 3.967 4 N -0.372 5.372 5 C 0.400 3.600 6 O -0.413 6.413 7 N -0.311 5.311 8 C 0.033 3.967 9 C 0.044 3.956 10 C -0.524 4.524 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.522 5.522 14 Si 0.729 3.271 15 H -0.211 1.211 16 H -0.202 1.202 17 H -0.200 1.200 18 C -0.238 4.238 19 C -0.243 4.243 20 C 0.308 3.692 21 O -0.329 6.329 22 C -0.019 4.019 23 H 0.134 0.866 24 C -0.154 4.154 25 C -0.215 4.215 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.881 -2.382 -8.948 17.527 hybrid contribution 0.610 0.124 0.649 0.899 sum -14.271 -2.257 -8.299 16.662 Atomic orbital electron populations 1.21683 0.95014 1.01979 1.01886 1.22048 0.96069 0.97341 1.03186 1.21270 0.75248 0.97039 1.03140 1.47786 1.05782 1.77128 1.06472 1.16037 0.81122 0.77599 0.85225 1.90942 1.80561 1.54034 1.15812 1.46922 1.08674 1.65428 1.10039 1.21902 0.82833 0.98896 0.93051 1.19246 0.94152 0.86086 0.96091 1.20467 1.03328 1.20638 1.07922 0.91702 1.25032 0.97995 0.94683 0.95785 1.69698 1.28142 1.29013 1.25344 0.86484 0.80495 0.78007 0.82090 1.21084 1.20161 1.19953 1.22964 1.01834 1.05781 0.93178 1.22879 0.93853 1.06417 1.01111 1.20603 0.90582 0.75449 0.82607 1.90782 1.35966 1.45745 1.60376 1.22231 0.89803 1.02127 0.87702 0.86591 1.21663 1.01284 0.97067 0.95365 1.21819 1.01805 1.01883 0.95961 0.92426 0.92659 0.92455 0.91509 0.91130 0.89795 0.89974 0.84445 0.90481 0.92323 0.90393 0.92037 0.91767 0.90649 0.91101 0.90377 0.92247 0.92302 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.15 -1.44 6.26 -26.73 -0.17 -1.60 16 3 C 0.15 1.66 5.91 -4.04 -0.02 1.63 16 4 N -0.63 -9.12 2.74 -172.41 -0.47 -9.59 16 5 C 0.70 13.53 6.38 -88.01 -0.56 12.97 16 6 O -0.54 -12.11 16.87 5.34 0.09 -12.02 16 7 N -0.57 -11.80 1.85 -120.73 -0.22 -12.03 16 8 C 0.15 3.74 5.10 -4.04 -0.02 3.72 16 9 C 0.05 1.18 2.33 -155.66 -0.36 0.82 16 10 C -0.49 -13.49 9.03 -34.44 -0.31 -13.80 16 11 H 0.06 1.79 7.82 -52.48 -0.41 1.38 16 12 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 13 N -0.88 -24.58 10.81 55.43 0.60 -23.98 16 14 Si 0.90 21.04 29.55 -169.99 -5.02 16.01 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C -0.20 -4.85 9.63 -26.73 -0.26 -5.11 16 19 C -0.21 -4.86 9.55 -26.73 -0.26 -5.11 16 20 C 0.52 9.74 5.91 -10.56 -0.06 9.68 16 21 O -0.46 -9.70 15.42 5.59 0.09 -9.62 16 22 C 0.09 1.20 3.49 -68.21 -0.24 0.96 16 23 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 24 C -0.12 -1.23 5.01 -26.73 -0.13 -1.36 16 25 C -0.16 -1.64 9.56 37.16 0.36 -1.28 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.61 6.85 -51.93 -0.36 0.26 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.14 3.69 5.85 -51.93 -0.30 3.38 16 34 H 0.08 1.98 7.90 -51.93 -0.41 1.57 16 35 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 36 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 37 H 0.06 1.45 5.80 -51.93 -0.30 1.15 16 38 H 0.06 1.48 5.46 -51.93 -0.28 1.19 16 39 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.64 7.52 -51.93 -0.39 0.25 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -31.07 351.63 -8.41 -39.48 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.00 Total: 3.90 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.76 Total: 2.54 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.10 Total: -45.60 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.18 Total: -21.64 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.07 -8.41 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348724655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.595 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds