Wall clock time and date at job start Tue Mar 31 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 N 1.46498 * 109.47598 * 184.89702 * 3 2 1 5 5 C 1.34534 * 126.68387 * 275.77517 * 4 3 2 6 6 O 1.21534 * 123.77685 * 359.94280 * 5 4 3 7 7 N 1.33799 * 112.45295 * 180.12082 * 5 4 3 8 8 C 1.46497 * 124.17863 * 179.85758 * 7 5 4 9 9 C 1.52998 * 109.47522 * 271.66886 * 8 7 5 10 10 C 1.50698 * 115.54914 * 174.20538 * 9 8 7 11 11 H 1.08008 * 119.99590 * 219.21895 * 10 9 8 12 12 C 1.37879 * 120.00192 * 39.22281 * 10 9 8 13 13 N 1.31510 * 119.99745 * 7.17057 * 12 10 9 14 14 Si 1.86799 * 120.00033 * 187.16873 * 12 10 9 15 15 H 1.48489 * 109.46978 * 179.97438 * 14 12 10 16 16 H 1.48506 * 109.46959 * 300.00100 * 14 12 10 17 17 H 1.48498 * 109.46887 * 59.99514 * 14 12 10 18 18 C 1.53004 * 117.51636 * 319.90670 * 9 8 7 19 19 C 1.53004 * 60.00011 * 107.47948 * 18 9 8 20 20 C 1.34771 * 111.64031 * 359.59910 * 7 5 4 21 21 O 1.21237 * 127.15222 * 180.26578 * 20 7 5 22 22 C 1.47305 * 126.69472 * 95.45830 * 4 3 2 23 23 H 1.09005 * 110.59656 * 61.51448 * 22 4 3 24 24 C 1.52997 * 110.60007 * 298.57247 * 22 4 3 25 25 C 1.53001 * 109.46940 * 179.64772 * 24 22 4 26 26 H 1.08999 * 109.47156 * 299.99859 * 1 2 3 27 27 H 1.09002 * 109.47163 * 60.00103 * 1 2 3 28 28 H 1.08995 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47156 * 240.00141 * 2 1 3 30 30 H 1.09002 * 109.47163 * 119.99897 * 2 1 3 31 31 H 1.09003 * 109.46975 * 64.89180 * 3 2 1 32 32 H 1.08998 * 109.47238 * 304.89876 * 3 2 1 33 33 H 1.08998 * 109.46770 * 151.66257 * 8 7 5 34 34 H 1.09001 * 109.46737 * 31.66775 * 8 7 5 35 35 H 0.96994 * 120.00036 * 175.00174 * 13 12 10 36 36 H 1.08999 * 117.49660 * 214.96900 * 18 9 8 37 37 H 1.08996 * 117.49903 * 359.97438 * 18 9 8 38 38 H 1.08999 * 117.49927 * 252.51387 * 19 18 9 39 39 H 1.08995 * 117.51926 * 107.47819 * 19 18 9 40 40 H 1.09004 * 109.46981 * 299.64127 * 24 22 4 41 41 H 1.08995 * 109.47832 * 59.64288 * 24 22 4 42 42 H 1.09007 * 109.46554 * 185.99508 * 25 24 22 43 43 H 1.09002 * 109.47033 * 305.98699 * 25 24 22 44 44 H 1.08992 * 109.47638 * 65.99479 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4443 -0.1179 5 6 4.3876 1.3062 0.8838 6 8 4.0741 1.1590 2.0488 7 7 5.6541 1.3527 0.4547 8 6 6.8240 1.2323 1.3282 9 6 7.2158 2.6163 1.8496 10 6 8.3229 2.6362 2.8718 11 1 8.2715 3.3151 3.7103 12 6 9.4014 1.7879 2.7366 13 7 9.5357 1.0636 1.6472 14 14 10.6717 1.6674 4.1009 15 1 11.7227 0.6925 3.7138 16 1 11.2889 3.0000 4.3217 17 1 10.0129 1.2138 5.3520 18 6 7.1375 3.7890 0.8700 19 6 6.1046 3.6585 1.9912 20 6 5.7204 1.5185 -0.8812 21 8 6.7215 1.5931 -1.5609 22 6 4.2831 1.5911 -1.3570 23 1 4.0825 2.5547 -1.8254 24 6 3.9780 0.4465 -2.3253 25 6 4.7969 0.6290 -3.6048 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7500 1.9304 0.9306 32 1 1.6068 1.9810 -0.8428 33 1 7.6551 0.8072 0.7656 34 1 6.5840 0.5818 2.1692 35 1 10.3302 0.5219 1.5198 36 1 7.8868 4.5749 0.9650 37 1 6.8072 3.5746 -0.1463 38 1 5.0945 3.3582 1.7126 39 1 6.1741 4.3583 2.8240 40 1 4.2396 -0.5034 -1.8590 41 1 2.9159 0.4507 -2.5700 42 1 4.5019 -0.1243 -4.3354 43 1 4.6149 1.6228 -4.0140 44 1 5.8569 0.5184 -3.3767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348724655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:27 Heat of formation + Delta-G solvation = -39.400184 kcal Electronic energy + Delta-G solvation = -25447.204588 eV Core-core repulsion = 21979.602718 eV Total energy + Delta-G solvation = -3467.601870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.51964 -39.67847 -38.91578 -37.48292 -36.29270 -34.83803 -34.25910 -33.18560 -29.57767 -28.02364 -27.35969 -26.53471 -24.21223 -23.12967 -22.82800 -22.22080 -21.47326 -20.63090 -18.76866 -18.29075 -17.91507 -17.39494 -16.88665 -16.54363 -16.08393 -15.91386 -15.60306 -15.51544 -15.23831 -14.78644 -14.26752 -14.12719 -13.96940 -13.83244 -13.53320 -13.36090 -13.02019 -12.86056 -12.78139 -12.74241 -12.54487 -12.41905 -12.21314 -12.16587 -12.05049 -11.92189 -11.77767 -11.45245 -11.15818 -10.88812 -10.83710 -10.46957 -10.10021 -9.92478 -8.17064 -6.29992 0.67965 1.19649 1.41653 1.44264 1.52171 2.02937 2.09086 2.38189 2.92640 3.02697 3.47992 3.64098 3.77111 4.00552 4.11456 4.12688 4.24548 4.35154 4.36721 4.43208 4.46416 4.48817 4.60470 4.68851 4.78290 4.79657 4.81059 4.87706 4.95954 5.05967 5.09017 5.14991 5.18417 5.24300 5.32648 5.39706 5.44022 5.46233 5.49323 5.59364 5.76563 6.24519 6.28326 6.50363 6.69976 7.12421 7.33783 8.85498 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.004990 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.869799 B = 5610.274094 C = 6253.717778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.145 3.855 4 N -0.613 5.613 5 C 0.690 3.310 6 O -0.580 6.580 7 N -0.579 5.579 8 C 0.170 3.830 9 C 0.015 3.985 10 C -0.514 4.514 11 H 0.058 0.942 12 C 0.026 3.974 13 N -0.907 5.907 14 Si 0.966 3.034 15 H -0.278 1.278 16 H -0.270 1.270 17 H -0.271 1.271 18 C -0.190 4.190 19 C -0.185 4.185 20 C 0.510 3.490 21 O -0.491 6.491 22 C 0.102 3.898 23 H 0.152 0.848 24 C -0.107 4.107 25 C -0.154 4.154 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.268 0.732 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 -1.671 -10.937 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.352 5.352 5 C 0.393 3.607 6 O -0.457 6.457 7 N -0.323 5.323 8 C 0.050 3.950 9 C 0.014 3.986 10 C -0.552 4.552 11 H 0.076 0.924 12 C -0.175 4.175 13 N -0.544 5.544 14 Si 0.790 3.210 15 H -0.203 1.203 16 H -0.195 1.195 17 H -0.196 1.196 18 C -0.228 4.228 19 C -0.223 4.223 20 C 0.298 3.702 21 O -0.363 6.363 22 C -0.005 4.005 23 H 0.169 0.831 24 C -0.146 4.146 25 C -0.212 4.212 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.197 -1.902 -10.678 20.332 hybrid contribution 1.270 -0.039 1.125 1.697 sum -15.927 -1.941 -9.553 18.674 Atomic orbital electron populations 1.21651 0.92856 1.02602 1.02887 1.21993 0.97815 0.96283 1.02075 1.21721 0.72657 0.98263 1.04738 1.47978 1.06681 1.75196 1.05314 1.16207 0.81201 0.77673 0.85632 1.90906 1.81033 1.56081 1.17715 1.46884 1.08502 1.66115 1.10802 1.21226 0.83732 0.97743 0.92347 1.19397 0.95112 0.87148 0.96990 1.20732 1.04625 1.21350 1.08500 0.92363 1.25777 0.99802 0.94096 0.97820 1.69848 1.28576 1.29213 1.26785 0.85492 0.78088 0.78206 0.79190 1.20346 1.19526 1.19629 1.22860 1.01867 1.04642 0.93426 1.22801 0.93658 1.05097 1.00704 1.21564 0.92812 0.74224 0.81557 1.90761 1.37875 1.46965 1.60676 1.22455 0.85323 1.05213 0.87476 0.83059 1.21719 1.03747 0.94830 0.94264 1.21798 0.99500 1.03602 0.96320 0.92763 0.90305 0.92099 0.90414 0.94537 0.90803 0.85327 0.87035 0.93004 0.92276 0.90907 0.91457 0.90988 0.90346 0.92520 0.86163 0.90015 0.90811 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.14 -2.41 6.26 30.59 0.19 -2.22 16 3 C 0.15 2.64 5.91 86.38 0.51 3.15 16 4 N -0.61 -16.40 2.74 -817.80 -2.24 -18.64 16 5 C 0.69 26.92 6.38 179.43 1.14 28.06 16 6 O -0.58 -26.78 16.87 -3.82 -0.06 -26.85 16 7 N -0.58 -24.71 1.85 -773.12 -1.43 -26.14 16 8 C 0.17 8.83 5.10 86.38 0.44 9.27 16 9 C 0.01 0.79 2.33 -52.93 -0.12 0.67 16 10 C -0.51 -29.45 9.03 25.60 0.23 -29.21 16 11 H 0.06 3.30 7.82 -2.91 -0.02 3.28 16 12 C 0.03 1.43 5.29 84.66 0.45 1.87 16 13 N -0.91 -52.07 10.81 21.45 0.23 -51.83 16 14 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C -0.19 -9.36 9.63 30.60 0.29 -9.06 16 19 C -0.19 -8.86 9.55 30.60 0.29 -8.57 16 20 C 0.51 19.01 5.91 87.94 0.52 19.53 16 21 O -0.49 -21.18 15.42 -2.90 -0.04 -21.23 16 22 C 0.10 2.46 3.49 44.37 0.16 2.62 16 23 H 0.15 2.77 8.14 -2.38 -0.02 2.75 16 24 C -0.11 -1.91 5.01 30.59 0.15 -1.75 16 25 C -0.15 -2.77 9.56 71.98 0.69 -2.08 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 1.14 6.85 -2.39 -0.02 1.13 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 32 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 6.35 5.85 -2.39 -0.01 6.34 16 34 H 0.05 2.85 7.90 -2.39 -0.02 2.83 16 35 H 0.27 14.58 8.32 -92.71 -0.77 13.81 16 36 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.07 3.20 5.80 -2.39 -0.01 3.18 16 38 H 0.07 3.31 5.46 -2.39 -0.01 3.30 16 39 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 1.23 7.52 -2.39 -0.02 1.21 16 42 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 0.98 6.50 -2.39 -0.02 0.97 16 Total: -1.00 -71.86 351.63 5.12 -66.74 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.98 Total: 20.68 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.66 Total: 11.35 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.44 Total: -96.61 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.11 Total: -48.08 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.86 5.12 -66.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348724655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.339 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds