Wall clock time and date at job start Tue Mar 31 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47308 * 2 1 4 4 N 1.46501 * 109.47219 * 185.10046 * 3 2 1 5 5 C 1.34523 * 126.69348 * 273.62443 * 4 3 2 6 6 O 1.21541 * 123.76707 * 0.03010 * 5 4 3 7 7 N 1.33789 * 112.46135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 124.17989 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46827 * 95.74229 * 8 7 5 10 10 C 1.50702 * 115.56136 * 91.21005 * 9 8 7 11 11 H 1.08003 * 119.99956 * 216.26343 * 10 9 8 12 12 C 1.37879 * 120.00109 * 36.26390 * 10 9 8 13 13 N 1.31511 * 119.99869 * 18.39419 * 12 10 9 14 14 Si 1.86795 * 119.99931 * 198.39935 * 12 10 9 15 15 H 1.48510 * 109.46899 * 59.99750 * 14 12 10 16 16 H 1.48499 * 109.47281 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47329 * 299.99967 * 14 12 10 18 18 C 1.53001 * 117.49791 * 305.51686 * 9 8 7 19 19 C 1.52997 * 117.49576 * 236.89604 * 9 8 7 20 20 C 1.34769 * 111.64109 * 0.22496 * 7 5 4 21 21 O 1.21236 * 127.15655 * 179.73554 * 20 7 5 22 22 C 1.47313 * 126.68486 * 93.66423 * 4 3 2 23 23 H 1.09000 * 110.59981 * 298.64090 * 22 4 3 24 24 C 1.52999 * 110.60096 * 61.44200 * 22 4 3 25 25 C 1.53009 * 109.46607 * 292.88740 * 24 22 4 26 26 H 1.08999 * 109.47205 * 59.99646 * 1 2 3 27 27 H 1.09002 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47099 * 299.99615 * 1 2 3 29 29 H 1.09005 * 109.46749 * 240.00187 * 2 1 3 30 30 H 1.08999 * 109.47205 * 120.00354 * 2 1 3 31 31 H 1.08997 * 109.46914 * 65.10422 * 3 2 1 32 32 H 1.08999 * 109.47054 * 305.10575 * 3 2 1 33 33 H 1.08998 * 109.47242 * 335.74691 * 8 7 5 34 34 H 1.09005 * 109.47446 * 215.73887 * 8 7 5 35 35 H 0.97000 * 120.00014 * 174.98174 * 13 12 10 36 36 H 1.09005 * 117.49419 * 145.02358 * 18 9 8 37 37 H 1.08994 * 117.49869 * 0.02562 * 18 9 8 38 38 H 1.08994 * 117.50496 * 0.02562 * 19 9 8 39 39 H 1.09009 * 117.49897 * 214.97993 * 19 9 8 40 40 H 1.08997 * 109.47316 * 52.88661 * 24 22 4 41 41 H 1.09000 * 109.46902 * 172.88910 * 24 22 4 42 42 H 1.08993 * 109.46693 * 82.69262 * 25 24 22 43 43 H 1.08998 * 109.46549 * 202.69271 * 25 24 22 44 44 H 1.08996 * 109.47095 * 322.69302 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4999 1.4443 -0.1228 5 6 4.3911 1.3452 0.8801 6 8 4.0817 1.2380 2.0505 7 7 5.6558 1.3779 0.4451 8 6 6.8289 1.2897 1.3181 9 6 7.3150 -0.1600 1.3742 10 6 8.3536 -0.5377 0.3495 11 1 8.3420 -1.5227 -0.0933 12 6 9.3185 0.3741 -0.0225 13 7 9.5700 1.4142 0.7420 14 14 10.2684 0.1323 -1.6127 15 1 9.3227 0.1233 -2.7577 16 1 11.2400 1.2424 -1.7826 17 1 10.9970 -1.1606 -1.5623 18 6 6.2994 -1.2305 1.7785 19 6 7.4075 -0.8212 2.7508 20 6 5.7174 1.5074 -0.8950 21 8 6.7160 1.5707 -1.5794 22 6 4.2782 1.5558 -1.3686 23 1 4.0596 0.7201 -2.0334 24 6 3.9896 2.8865 -2.0663 25 6 2.5417 2.8995 -2.5608 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.7533 1.9292 0.9321 32 1 1.6040 1.9821 -0.8407 33 1 6.5613 1.6222 2.3210 34 1 7.6232 1.9242 0.9247 35 1 10.2974 2.0158 0.5186 36 1 6.3824 -2.2080 1.3033 37 1 5.2849 -0.9020 2.0041 38 1 7.1218 -0.2237 3.6164 39 1 8.2196 -1.5295 2.9154 40 1 4.1409 3.7057 -1.3634 41 1 4.6642 3.0059 -2.9141 42 1 1.8807 3.1831 -1.7419 43 1 2.4420 3.6185 -3.3739 44 1 2.2711 1.9062 -2.9189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348724658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:31 Heat of formation + Delta-G solvation = -16.052458 kcal Electronic energy + Delta-G solvation = -25641.626091 eV Core-core repulsion = 22175.036654 eV Total energy + Delta-G solvation = -3466.589437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85184 -37.93170 -37.22124 -36.03162 -34.90212 -33.75017 -32.14989 -31.92335 -28.59178 -26.31425 -25.57390 -25.12334 -22.76874 -21.83163 -21.21158 -20.99829 -19.96923 -18.83165 -17.12302 -16.61902 -16.23053 -15.66014 -15.40872 -14.83913 -14.65288 -14.45971 -14.26721 -14.08287 -13.72320 -13.52412 -13.16408 -12.96628 -12.71720 -12.48353 -12.12258 -12.09333 -11.74679 -11.51090 -11.45875 -11.27199 -11.12911 -10.90930 -10.64747 -10.63117 -10.35720 -10.29933 -10.05525 -9.88189 -9.44525 -8.96242 -8.80950 -8.71810 -8.46575 -8.04735 -6.06898 -4.02447 2.31771 2.62683 3.36100 3.41907 3.50837 3.51775 3.68721 4.43917 4.45808 4.64785 4.81233 4.84885 4.91826 5.04337 5.11959 5.20725 5.24121 5.34558 5.46881 5.54681 5.59769 5.66766 5.76442 5.88641 5.90728 5.92775 6.04801 6.09566 6.16113 6.22314 6.36823 6.47058 6.51567 6.76015 6.80514 6.88846 7.04487 7.15477 7.41815 7.43021 7.85201 7.98609 8.16441 8.44175 8.71600 8.89079 9.56141 10.98314 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.006059 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.372058 B = 4619.744153 C = 5533.415093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.139 3.861 4 N -0.627 5.627 5 C 0.698 3.302 6 O -0.553 6.553 7 N -0.558 5.558 8 C 0.143 3.857 9 C 0.037 3.963 10 C -0.488 4.488 11 H 0.058 0.942 12 C 0.086 3.914 13 N -0.879 5.879 14 Si 0.892 3.108 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.281 1.281 18 C -0.207 4.207 19 C -0.191 4.191 20 C 0.521 3.479 21 O -0.444 6.444 22 C 0.090 3.910 23 H 0.116 0.884 24 C -0.121 4.121 25 C -0.155 4.155 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.139 0.861 35 H 0.265 0.735 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 3.107 -5.565 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.018 3.982 4 N -0.367 5.367 5 C 0.401 3.599 6 O -0.429 6.429 7 N -0.301 5.301 8 C 0.024 3.976 9 C 0.036 3.964 10 C -0.525 4.525 11 H 0.076 0.924 12 C -0.117 4.117 13 N -0.516 5.516 14 Si 0.720 3.280 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.207 1.207 18 C -0.245 4.245 19 C -0.229 4.229 20 C 0.306 3.694 21 O -0.311 6.311 22 C -0.017 4.017 23 H 0.134 0.866 24 C -0.160 4.160 25 C -0.212 4.212 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.834 3.302 -5.271 17.012 hybrid contribution 0.522 -0.386 -0.649 0.918 sum -15.311 2.916 -5.921 16.673 Atomic orbital electron populations 1.21679 0.95090 1.01972 1.01757 1.21978 0.95930 0.97462 1.03136 1.21666 0.75680 0.97224 1.03664 1.47701 1.05625 1.77357 1.05991 1.16065 0.81214 0.77369 0.85249 1.90898 1.80938 1.55373 1.15647 1.46609 1.07898 1.65766 1.09831 1.21827 0.83535 1.00285 0.91931 1.19237 0.95203 0.88381 0.93571 1.20373 1.11600 0.99195 1.21302 0.92361 1.24809 0.96206 0.94583 0.96106 1.69749 1.29237 1.15873 1.36729 0.86647 0.79058 0.77242 0.85092 1.19401 1.21340 1.20722 1.22858 0.94213 1.00487 1.06924 1.22973 0.99907 1.05304 0.94742 1.20526 0.90324 0.75914 0.82647 1.90816 1.35985 1.44344 1.59953 1.22234 0.89963 1.00915 0.88636 0.86636 1.21686 0.98319 0.95082 1.00876 1.22002 0.95718 1.02305 1.01130 0.92699 0.92461 0.92513 0.91686 0.91212 0.90074 0.88687 0.91823 0.84408 0.92541 0.91036 0.90928 0.91550 0.90286 0.90874 0.89401 0.91852 0.92072 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.15 -1.55 6.26 -26.73 -0.17 -1.72 16 3 C 0.14 1.53 5.81 -4.04 -0.02 1.51 16 4 N -0.63 -9.26 2.74 -172.40 -0.47 -9.73 16 5 C 0.70 13.62 7.52 -88.03 -0.66 12.96 16 6 O -0.55 -12.18 16.26 5.33 0.09 -12.10 16 7 N -0.56 -11.90 2.41 -120.73 -0.29 -12.20 16 8 C 0.14 3.49 5.48 -4.04 -0.02 3.47 16 9 C 0.04 0.95 2.01 -155.66 -0.31 0.64 16 10 C -0.49 -13.54 9.00 -34.44 -0.31 -13.85 16 11 H 0.06 1.64 7.88 -52.48 -0.41 1.23 16 12 C 0.09 2.37 5.03 -17.82 -0.09 2.28 16 13 N -0.88 -24.53 11.06 55.43 0.61 -23.92 16 14 Si 0.89 22.02 29.58 -169.99 -5.03 16.99 16 15 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.21 -4.87 9.65 -26.73 -0.26 -5.13 16 19 C -0.19 -4.59 9.88 -26.73 -0.26 -4.85 16 20 C 0.52 10.41 7.64 -10.55 -0.08 10.33 16 21 O -0.44 -10.35 17.83 5.60 0.10 -10.25 16 22 C 0.09 1.29 3.44 -68.20 -0.23 1.05 16 23 H 0.12 1.45 8.07 -51.93 -0.42 1.03 16 24 C -0.12 -1.35 5.68 -26.73 -0.15 -1.50 16 25 C -0.15 -1.23 8.51 37.16 0.32 -0.91 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.10 0.79 4.15 -51.93 -0.22 0.57 16 33 H 0.06 1.54 7.46 -51.93 -0.39 1.15 16 34 H 0.14 3.69 5.25 -51.93 -0.27 3.42 16 35 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.07 1.70 6.48 -51.93 -0.34 1.36 16 38 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 39 H 0.08 1.89 8.14 -51.92 -0.42 1.47 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.46 5.92 -51.93 -0.31 0.16 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -31.48 355.94 -8.48 -39.96 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.96 Total: 2.39 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.89 Total: 3.49 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.15 Total: -45.85 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.19 Total: -22.35 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.48 -8.48 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348724658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.910 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds