Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47308 * 2 1 4 4 N 1.46501 * 109.47219 * 185.10046 * 3 2 1 5 5 C 1.34523 * 126.69348 * 273.62443 * 4 3 2 6 6 O 1.21541 * 123.76707 * 0.03010 * 5 4 3 7 7 N 1.33789 * 112.46135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 124.17989 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46827 * 95.74229 * 8 7 5 10 10 C 1.50702 * 115.56136 * 91.21005 * 9 8 7 11 11 H 1.08003 * 119.99956 * 216.26343 * 10 9 8 12 12 C 1.37879 * 120.00109 * 36.26390 * 10 9 8 13 13 N 1.31511 * 119.99869 * 18.39419 * 12 10 9 14 14 Si 1.86795 * 119.99931 * 198.39935 * 12 10 9 15 15 H 1.48510 * 109.46899 * 59.99750 * 14 12 10 16 16 H 1.48499 * 109.47281 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47329 * 299.99967 * 14 12 10 18 18 C 1.53001 * 117.49791 * 305.51686 * 9 8 7 19 19 C 1.52997 * 117.49576 * 236.89604 * 9 8 7 20 20 C 1.34769 * 111.64109 * 0.22496 * 7 5 4 21 21 O 1.21236 * 127.15655 * 179.73554 * 20 7 5 22 22 C 1.47313 * 126.68486 * 93.66423 * 4 3 2 23 23 H 1.09000 * 110.59981 * 298.64090 * 22 4 3 24 24 C 1.52999 * 110.60096 * 61.44200 * 22 4 3 25 25 C 1.53009 * 109.46607 * 292.88740 * 24 22 4 26 26 H 1.08999 * 109.47205 * 59.99646 * 1 2 3 27 27 H 1.09002 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47099 * 299.99615 * 1 2 3 29 29 H 1.09005 * 109.46749 * 240.00187 * 2 1 3 30 30 H 1.08999 * 109.47205 * 120.00354 * 2 1 3 31 31 H 1.08997 * 109.46914 * 65.10422 * 3 2 1 32 32 H 1.08999 * 109.47054 * 305.10575 * 3 2 1 33 33 H 1.08998 * 109.47242 * 335.74691 * 8 7 5 34 34 H 1.09005 * 109.47446 * 215.73887 * 8 7 5 35 35 H 0.97000 * 120.00014 * 174.98174 * 13 12 10 36 36 H 1.09005 * 117.49419 * 145.02358 * 18 9 8 37 37 H 1.08994 * 117.49869 * 0.02562 * 18 9 8 38 38 H 1.08994 * 117.50496 * 0.02562 * 19 9 8 39 39 H 1.09009 * 117.49897 * 214.97993 * 19 9 8 40 40 H 1.08997 * 109.47316 * 52.88661 * 24 22 4 41 41 H 1.09000 * 109.46902 * 172.88910 * 24 22 4 42 42 H 1.08993 * 109.46693 * 82.69262 * 25 24 22 43 43 H 1.08998 * 109.46549 * 202.69271 * 25 24 22 44 44 H 1.08996 * 109.47095 * 322.69302 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4999 1.4443 -0.1228 5 6 4.3911 1.3452 0.8801 6 8 4.0817 1.2380 2.0505 7 7 5.6558 1.3779 0.4451 8 6 6.8289 1.2897 1.3181 9 6 7.3150 -0.1600 1.3742 10 6 8.3536 -0.5377 0.3495 11 1 8.3420 -1.5227 -0.0933 12 6 9.3185 0.3741 -0.0225 13 7 9.5700 1.4142 0.7420 14 14 10.2684 0.1323 -1.6127 15 1 9.3227 0.1233 -2.7577 16 1 11.2400 1.2424 -1.7826 17 1 10.9970 -1.1606 -1.5623 18 6 6.2994 -1.2305 1.7785 19 6 7.4075 -0.8212 2.7508 20 6 5.7174 1.5074 -0.8950 21 8 6.7160 1.5707 -1.5794 22 6 4.2782 1.5558 -1.3686 23 1 4.0596 0.7201 -2.0334 24 6 3.9896 2.8865 -2.0663 25 6 2.5417 2.8995 -2.5608 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.7533 1.9292 0.9321 32 1 1.6040 1.9821 -0.8407 33 1 6.5613 1.6222 2.3210 34 1 7.6232 1.9242 0.9247 35 1 10.2974 2.0158 0.5186 36 1 6.3824 -2.2080 1.3033 37 1 5.2849 -0.9020 2.0041 38 1 7.1218 -0.2237 3.6164 39 1 8.2196 -1.5295 2.9154 40 1 4.1409 3.7057 -1.3634 41 1 4.6642 3.0059 -2.9141 42 1 1.8807 3.1831 -1.7419 43 1 2.4420 3.6185 -3.3739 44 1 2.2711 1.9062 -2.9189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348724658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = -33.630957 kcal Electronic energy + Delta-G solvation = -25642.388352 eV Core-core repulsion = 22175.036654 eV Total energy + Delta-G solvation = -3467.351698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.33753 -39.52309 -38.88018 -37.59381 -36.33482 -34.77060 -34.26065 -33.01605 -29.81337 -27.96659 -27.26053 -26.51000 -23.92412 -23.09673 -22.75806 -22.36200 -21.47660 -20.65258 -18.60943 -18.37791 -17.68628 -17.24714 -16.77111 -16.59564 -16.09786 -15.73528 -15.65428 -15.50236 -15.20133 -15.04043 -14.68857 -14.02651 -13.92975 -13.68561 -13.33165 -13.22901 -13.08789 -12.93500 -12.89326 -12.62297 -12.34846 -12.31120 -12.25859 -12.19678 -11.96404 -11.88956 -11.75088 -11.25603 -11.12800 -10.83573 -10.73616 -10.43735 -10.10903 -9.84868 -8.17806 -6.18402 0.78745 1.25150 1.36633 1.44232 1.51052 2.09245 2.15695 2.40725 2.97199 3.09896 3.58394 3.63574 3.82776 3.97570 4.10387 4.16208 4.27226 4.31769 4.42382 4.46328 4.48570 4.52448 4.57137 4.66281 4.81215 4.82166 4.86907 4.93852 4.98542 5.10281 5.15288 5.16200 5.21134 5.23700 5.31558 5.37610 5.42850 5.47393 5.48888 5.62441 5.82524 6.27175 6.39877 6.62924 6.74517 7.17374 7.41774 8.86789 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.006059 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.372058 B = 4619.744153 C = 5533.415093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.133 3.867 4 N -0.609 5.609 5 C 0.691 3.309 6 O -0.585 6.585 7 N -0.570 5.570 8 C 0.155 3.845 9 C 0.015 3.985 10 C -0.505 4.505 11 H 0.046 0.954 12 C 0.054 3.946 13 N -0.896 5.896 14 Si 0.939 3.061 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.272 1.272 18 C -0.187 4.187 19 C -0.189 4.189 20 C 0.508 3.492 21 O -0.487 6.487 22 C 0.104 3.896 23 H 0.144 0.856 24 C -0.116 4.116 25 C -0.150 4.150 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.055 0.945 34 H 0.113 0.887 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.725 3.254 -7.408 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.014 3.986 4 N -0.348 5.348 5 C 0.394 3.606 6 O -0.463 6.463 7 N -0.313 5.313 8 C 0.034 3.966 9 C 0.014 3.986 10 C -0.542 4.542 11 H 0.065 0.935 12 C -0.148 4.148 13 N -0.534 5.534 14 Si 0.765 3.235 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.224 4.224 19 C -0.227 4.227 20 C 0.296 3.704 21 O -0.357 6.357 22 C -0.003 4.003 23 H 0.162 0.838 24 C -0.155 4.155 25 C -0.206 4.206 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.329 3.447 -7.135 19.969 hybrid contribution 1.250 -0.425 -0.054 1.321 sum -17.079 3.022 -7.189 18.775 Atomic orbital electron populations 1.21650 0.92669 1.02622 1.02994 1.21941 0.97962 0.96526 1.01759 1.22091 0.73100 0.98210 1.05202 1.47886 1.06531 1.75543 1.04796 1.16200 0.81179 0.77506 0.85675 1.90867 1.81269 1.57049 1.17135 1.46634 1.08035 1.66186 1.10430 1.21338 0.84296 0.99110 0.91856 1.19310 0.95881 0.89433 0.93957 1.20496 1.12490 0.98934 1.22244 0.93530 1.25324 0.97000 0.94444 0.98010 1.69841 1.29591 1.16312 1.37654 0.85908 0.78038 0.77677 0.81888 1.20186 1.20638 1.19755 1.22745 0.93811 0.99938 1.05923 1.22968 1.00131 1.05102 0.94535 1.21516 0.92489 0.74509 0.81922 1.90775 1.38152 1.46200 1.60552 1.22382 0.85513 1.03962 0.88443 0.83844 1.21725 1.01038 0.92409 1.00292 1.21994 0.92830 1.03851 1.01958 0.90314 0.92185 0.92418 0.91210 0.94502 0.90537 0.84799 0.92675 0.86931 0.92509 0.90578 0.90821 0.90846 0.90408 0.91837 0.89234 0.90892 0.90375 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.14 -2.68 6.26 30.60 0.19 -2.49 16 3 C 0.13 2.55 5.81 86.38 0.50 3.06 16 4 N -0.61 -16.92 2.74 -817.77 -2.24 -19.16 16 5 C 0.69 26.95 7.52 179.44 1.35 28.30 16 6 O -0.59 -26.08 16.26 -3.84 -0.06 -26.14 16 7 N -0.57 -24.74 2.41 -773.11 -1.87 -26.61 16 8 C 0.15 7.81 5.48 86.38 0.47 8.28 16 9 C 0.02 0.81 2.01 -52.93 -0.11 0.70 16 10 C -0.51 -28.55 9.00 25.60 0.23 -28.32 16 11 H 0.05 2.67 7.88 -2.91 -0.02 2.65 16 12 C 0.05 3.01 5.03 84.66 0.43 3.43 16 13 N -0.90 -51.17 11.06 21.45 0.24 -50.93 16 14 Si 0.94 45.57 29.58 68.60 2.03 47.60 16 15 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 18 C -0.19 -8.82 9.65 30.59 0.30 -8.53 16 19 C -0.19 -9.19 9.88 30.59 0.30 -8.89 16 20 C 0.51 20.36 7.64 87.94 0.67 21.03 16 21 O -0.49 -23.11 17.83 -2.89 -0.05 -23.16 16 22 C 0.10 2.74 3.44 44.37 0.15 2.90 16 23 H 0.14 3.12 8.07 -2.39 -0.02 3.10 16 24 C -0.12 -2.27 5.68 30.60 0.17 -2.10 16 25 C -0.15 -1.66 8.51 71.99 0.61 -1.05 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.13 1.56 4.15 -2.39 -0.01 1.55 16 33 H 0.05 2.79 7.46 -2.39 -0.02 2.77 16 34 H 0.11 6.29 5.25 -2.38 -0.01 6.28 16 35 H 0.27 14.50 8.32 -92.71 -0.77 13.73 16 36 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 37 H 0.07 3.46 6.48 -2.39 -0.02 3.45 16 38 H 0.07 3.42 8.03 -2.39 -0.02 3.41 16 39 H 0.08 3.76 8.14 -2.38 -0.02 3.74 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 0.69 5.92 -2.39 -0.01 0.67 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 Total: -1.00 -70.60 355.94 5.02 -65.58 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.99 Total: 17.56 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 5.99 Total: 15.25 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -3.87 Total: -96.70 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.11 Total: -49.30 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.60 5.02 -65.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348724658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.953 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds