Wall clock time and date at job start Tue Mar 31 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 N 1.46900 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.46895 * 110.99992 * 293.95278 * 4 3 2 6 6 C 1.46902 * 110.99773 * 169.99906 * 4 3 2 7 7 C 1.50705 * 109.47303 * 189.99831 * 6 4 3 8 8 O 1.21282 * 119.99548 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99759 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00646 * 0.02562 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46897 * 89.99800 * 15 13 11 17 17 H 1.48496 * 109.47501 * 210.00050 * 15 13 11 18 18 H 1.48501 * 109.46824 * 330.00136 * 15 13 11 19 19 C 1.46505 * 119.99455 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.09001 * 109.46909 * 300.00042 * 1 2 3 26 26 H 1.08999 * 109.47139 * 59.99787 * 1 2 3 27 27 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46575 * 240.00385 * 2 1 3 29 29 H 1.08996 * 109.47586 * 120.00459 * 2 1 3 30 30 H 1.09001 * 109.47173 * 60.00120 * 3 2 1 31 31 H 1.08999 * 109.47198 * 300.00177 * 3 2 1 32 32 H 1.09000 * 109.47411 * 296.04478 * 5 4 3 33 33 H 1.08997 * 109.47252 * 56.05468 * 5 4 3 34 34 H 1.09004 * 109.46835 * 176.04533 * 5 4 3 35 35 H 1.09006 * 109.47012 * 70.00419 * 6 4 3 36 36 H 1.08999 * 109.47700 * 310.00713 * 6 4 3 37 37 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 38 38 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 39 39 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 41 41 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 42 42 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 43 43 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0360 0.8855 1.2524 6 6 4.0354 2.7931 -0.2388 7 6 5.5216 2.7184 -0.4768 8 8 6.0866 1.6455 -0.4510 9 7 6.2228 3.8437 -0.7182 10 6 5.5405 5.1397 -0.7488 11 6 5.0750 5.4293 -2.1525 12 1 5.2685 4.7193 -2.9430 13 6 4.4021 6.6008 -2.4278 14 7 4.1660 7.4653 -1.4652 15 14 3.8257 6.9602 -4.1680 16 1 2.4555 6.4200 -4.3570 17 1 3.8144 8.4280 -4.3925 18 1 4.7491 6.3182 -5.1377 19 6 7.6676 3.7709 -0.9501 20 6 7.9315 3.5912 -2.4229 21 6 8.1037 4.5807 -3.3177 22 6 8.3240 3.9654 -4.5714 23 6 8.2739 2.6368 -4.3677 24 8 8.0405 2.4159 -3.0636 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7453 1.5258 2.0852 33 1 3.6305 -0.1148 1.4042 34 1 5.1233 0.8321 1.1973 35 1 3.8379 3.4188 0.6317 36 1 3.5485 3.2238 -1.1137 37 1 4.6808 5.1135 -0.0791 38 1 6.2289 5.9205 -0.4259 39 1 3.6922 8.2893 -1.6588 40 1 8.1376 4.6924 -0.6065 41 1 8.0816 2.9252 -0.4010 42 1 8.0793 5.6416 -3.1169 43 1 8.4990 4.4661 -5.5122 44 1 8.4033 1.8764 -5.1237 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358605661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:17 Heat of formation + Delta-G solvation = -14.270383 kcal Electronic energy + Delta-G solvation = -24618.134251 eV Core-core repulsion = 21151.622091 eV Total energy + Delta-G solvation = -3466.512160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92314 -39.29417 -37.07011 -35.10467 -33.05410 -32.64492 -32.32327 -30.43458 -27.85782 -27.33791 -26.75753 -25.08419 -23.13305 -22.53747 -21.11181 -20.56535 -20.02452 -18.36187 -16.98566 -16.60191 -16.43243 -15.58276 -15.47123 -15.25617 -14.88708 -14.56458 -14.31364 -14.02770 -13.77983 -13.33973 -12.94892 -12.53523 -12.36248 -12.25782 -12.14930 -12.11164 -11.91236 -11.63195 -11.54192 -11.35101 -11.22945 -11.01841 -10.92636 -10.91254 -10.74014 -10.42339 -10.21924 -9.78592 -9.26690 -9.03663 -8.58834 -8.05805 -7.87975 -7.72554 -6.19336 -4.24686 2.26663 3.14991 3.22290 3.29952 3.34420 3.38159 3.69123 3.82704 4.31760 4.46180 5.02529 5.13562 5.14468 5.25950 5.30217 5.40717 5.56461 5.57722 5.60502 5.65523 5.74096 5.79725 5.86131 5.91351 5.96198 6.00156 6.04355 6.18783 6.25531 6.32681 6.37662 6.45135 6.56482 6.63807 6.69357 7.06483 7.11711 7.27985 7.41057 7.49249 7.76134 7.77672 8.04281 8.27444 8.81657 9.02299 9.43185 10.87674 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.005909 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.200712 B = 4737.349229 C = 6133.728928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.055 3.945 4 N -0.527 5.527 5 C 0.019 3.981 6 C 0.044 3.956 7 C 0.522 3.478 8 O -0.548 6.548 9 N -0.597 5.597 10 C 0.236 3.764 11 C -0.528 4.528 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.202 3.798 20 C -0.016 4.016 21 C -0.180 4.180 22 C -0.217 4.217 23 C -0.056 4.056 24 O -0.169 6.169 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -8.082 1.952 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.073 4.073 4 N -0.251 5.251 5 C -0.129 4.129 6 C -0.086 4.086 7 C 0.310 3.690 8 O -0.427 6.427 9 N -0.329 5.329 10 C 0.117 3.883 11 C -0.567 4.567 12 H 0.082 0.918 13 C -0.137 4.137 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.196 1.196 19 C 0.078 3.922 20 C -0.068 4.068 21 C -0.200 4.200 22 C -0.236 4.236 23 C -0.125 4.125 24 O -0.064 6.064 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.815 -9.019 1.789 9.231 hybrid contribution -0.797 1.322 -0.774 1.726 sum 0.019 -7.697 1.015 7.764 Atomic orbital electron populations 1.21738 0.95895 1.01401 1.01783 1.21526 0.94985 0.96647 1.02614 1.22175 0.87250 0.96986 1.00906 1.61638 1.06660 1.21289 1.35477 1.22569 1.02874 0.98790 0.88675 1.21979 0.93610 0.89632 1.03356 1.20350 0.89043 0.83466 0.76145 1.90577 1.71385 1.28362 1.52351 1.48323 1.06731 1.09350 1.68472 1.19507 0.92832 0.78199 0.97803 1.21493 1.36383 1.04401 0.94407 0.91832 1.24897 0.95690 0.95881 0.97188 1.69920 1.41199 1.10141 1.32001 0.86586 0.79289 0.77379 0.84890 1.20597 1.21176 1.19611 1.19602 0.83151 1.03007 0.86392 1.22922 1.04945 0.82380 0.96517 1.21557 1.06128 1.00328 0.91991 1.21762 1.08669 0.93921 0.99253 1.23846 1.07079 0.97618 0.83932 1.84067 1.69243 1.33324 1.19813 0.92980 0.92612 0.92805 0.91154 0.92106 0.95094 0.90647 0.96671 0.91855 0.89444 0.92255 0.86842 0.94365 0.94508 0.92620 0.87947 0.89573 0.83440 0.84270 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.46 5.86 -26.73 -0.16 -1.62 16 3 C 0.05 0.79 4.96 -3.82 -0.02 0.77 16 4 N -0.53 -9.03 4.50 -244.37 -1.10 -10.13 16 5 C 0.02 0.29 9.01 60.06 0.54 0.84 16 6 C 0.04 0.84 4.00 -4.97 -0.02 0.82 16 7 C 0.52 10.91 7.40 -10.98 -0.08 10.83 16 8 O -0.55 -12.37 13.89 5.56 0.08 -12.29 16 9 N -0.60 -12.30 2.44 -176.43 -0.43 -12.73 16 10 C 0.24 5.35 5.01 -5.20 -0.03 5.32 16 11 C -0.53 -13.26 9.04 -34.44 -0.31 -13.57 16 12 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -23.97 13.29 55.43 0.74 -23.24 16 15 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.20 3.74 5.98 -5.19 -0.03 3.71 16 20 C -0.02 -0.32 6.90 -35.62 -0.25 -0.56 16 21 C -0.18 -3.44 10.40 -39.70 -0.41 -3.85 16 22 C -0.22 -3.74 10.91 -39.71 -0.43 -4.17 16 23 C -0.06 -0.94 12.09 29.41 0.36 -0.59 16 24 O -0.17 -3.37 10.65 5.68 0.06 -3.31 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.71 6.47 -51.93 -0.34 0.38 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 34 H 0.09 1.54 5.88 -51.93 -0.31 1.24 16 35 H 0.06 1.08 7.38 -51.93 -0.38 0.69 16 36 H 0.11 2.30 7.79 -51.93 -0.40 1.90 16 37 H 0.04 0.89 6.44 -51.93 -0.33 0.56 16 38 H 0.04 0.86 7.89 -51.93 -0.41 0.45 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.10 1.65 7.89 -51.93 -0.41 1.24 16 41 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 42 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 43 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 44 H 0.19 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -29.50 362.93 -7.83 -37.32 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.05 Total: 4.99 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.57 Total: -1.62 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.79 Total: -46.09 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.14 Total: -15.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.50 -7.83 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358605661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.050 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds