Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 N 1.46900 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.46895 * 110.99992 * 293.95278 * 4 3 2 6 6 C 1.46902 * 110.99773 * 169.99906 * 4 3 2 7 7 C 1.50705 * 109.47303 * 189.99831 * 6 4 3 8 8 O 1.21282 * 119.99548 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99759 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00646 * 0.02562 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46897 * 89.99800 * 15 13 11 17 17 H 1.48496 * 109.47501 * 210.00050 * 15 13 11 18 18 H 1.48501 * 109.46824 * 330.00136 * 15 13 11 19 19 C 1.46505 * 119.99455 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.09001 * 109.46909 * 300.00042 * 1 2 3 26 26 H 1.08999 * 109.47139 * 59.99787 * 1 2 3 27 27 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46575 * 240.00385 * 2 1 3 29 29 H 1.08996 * 109.47586 * 120.00459 * 2 1 3 30 30 H 1.09001 * 109.47173 * 60.00120 * 3 2 1 31 31 H 1.08999 * 109.47198 * 300.00177 * 3 2 1 32 32 H 1.09000 * 109.47411 * 296.04478 * 5 4 3 33 33 H 1.08997 * 109.47252 * 56.05468 * 5 4 3 34 34 H 1.09004 * 109.46835 * 176.04533 * 5 4 3 35 35 H 1.09006 * 109.47012 * 70.00419 * 6 4 3 36 36 H 1.08999 * 109.47700 * 310.00713 * 6 4 3 37 37 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 38 38 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 39 39 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 41 41 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 42 42 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 43 43 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0360 0.8855 1.2524 6 6 4.0354 2.7931 -0.2388 7 6 5.5216 2.7184 -0.4768 8 8 6.0866 1.6455 -0.4510 9 7 6.2228 3.8437 -0.7182 10 6 5.5405 5.1397 -0.7488 11 6 5.0750 5.4293 -2.1525 12 1 5.2685 4.7193 -2.9430 13 6 4.4021 6.6008 -2.4278 14 7 4.1660 7.4653 -1.4652 15 14 3.8257 6.9602 -4.1680 16 1 2.4555 6.4200 -4.3570 17 1 3.8144 8.4280 -4.3925 18 1 4.7491 6.3182 -5.1377 19 6 7.6676 3.7709 -0.9501 20 6 7.9315 3.5912 -2.4229 21 6 8.1037 4.5807 -3.3177 22 6 8.3240 3.9654 -4.5714 23 6 8.2739 2.6368 -4.3677 24 8 8.0405 2.4159 -3.0636 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7453 1.5258 2.0852 33 1 3.6305 -0.1148 1.4042 34 1 5.1233 0.8321 1.1973 35 1 3.8379 3.4188 0.6317 36 1 3.5485 3.2238 -1.1137 37 1 4.6808 5.1135 -0.0791 38 1 6.2289 5.9205 -0.4259 39 1 3.6922 8.2893 -1.6588 40 1 8.1376 4.6924 -0.6065 41 1 8.0816 2.9252 -0.4010 42 1 8.0793 5.6416 -3.1169 43 1 8.4990 4.4661 -5.5122 44 1 8.4033 1.8764 -5.1237 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358605661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = -31.158932 kcal Electronic energy + Delta-G solvation = -24618.866594 eV Core-core repulsion = 21151.622091 eV Total energy + Delta-G solvation = -3467.244503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.35712 -40.89746 -38.39048 -36.80774 -34.64094 -34.06540 -33.77634 -31.93152 -29.30466 -29.15090 -27.89836 -26.51869 -24.91314 -23.85186 -22.53964 -21.69343 -21.44258 -19.98011 -18.72607 -18.23349 -18.00666 -17.19613 -16.79704 -16.65854 -16.32984 -16.26702 -15.78551 -15.35715 -15.09638 -14.70265 -14.37566 -14.04660 -13.92474 -13.66413 -13.62702 -13.51917 -13.34065 -12.99038 -12.90479 -12.72531 -12.68516 -12.62968 -12.55594 -12.27835 -12.08903 -11.93119 -11.71587 -11.44304 -10.74317 -10.68234 -10.54232 -9.65619 -9.28047 -9.22456 -8.18242 -6.28261 0.83593 1.38386 1.42350 1.50821 1.67164 1.81668 2.28710 2.31410 2.44912 3.06131 3.13480 3.72736 3.92630 3.99631 4.13732 4.18312 4.25164 4.30019 4.37859 4.46443 4.51744 4.53991 4.57794 4.65093 4.69336 4.83379 4.88283 4.92143 5.00710 5.11310 5.13003 5.19729 5.22226 5.30132 5.31456 5.43622 5.65114 5.71870 5.80072 5.97228 6.09276 6.16985 6.33373 6.55453 6.84373 7.32112 7.44345 8.87757 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.005909 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.200712 B = 4737.349229 C = 6133.728928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.542 5.542 5 C 0.024 3.976 6 C 0.053 3.947 7 C 0.517 3.483 8 O -0.566 6.566 9 N -0.597 5.597 10 C 0.251 3.749 11 C -0.524 4.524 12 H 0.046 0.954 13 C 0.029 3.971 14 N -0.918 5.918 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.275 1.275 19 C 0.199 3.801 20 C -0.038 4.038 21 C -0.190 4.190 22 C -0.229 4.229 23 C -0.049 4.049 24 O -0.192 6.192 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -8.783 1.359 8.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.267 5.267 5 C -0.124 4.124 6 C -0.077 4.077 7 C 0.306 3.694 8 O -0.446 6.446 9 N -0.328 5.328 10 C 0.130 3.870 11 C -0.563 4.563 12 H 0.064 0.936 13 C -0.172 4.172 14 N -0.558 5.558 15 Si 0.768 3.232 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.200 1.200 19 C 0.076 3.924 20 C -0.089 4.089 21 C -0.211 4.211 22 C -0.248 4.248 23 C -0.117 4.117 24 O -0.088 6.088 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.160 0.840 43 H 0.182 0.818 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.257 -9.722 1.198 9.798 hybrid contribution -0.580 1.499 -0.619 1.722 sum -0.323 -8.223 0.579 8.250 Atomic orbital electron populations 1.21707 0.94138 1.02473 1.02052 1.21488 0.96425 0.94858 1.02411 1.22269 0.85525 0.98656 1.00922 1.61663 1.08375 1.20025 1.36595 1.22507 1.01454 1.00059 0.88348 1.21821 0.92185 0.90988 1.02752 1.20713 0.89836 0.83165 0.75690 1.90562 1.71973 1.28847 1.53209 1.48302 1.07654 1.08578 1.68296 1.19197 0.92457 0.78875 0.96421 1.21506 1.36023 1.03864 0.94891 0.93597 1.25441 0.95947 0.95875 0.99891 1.69984 1.41994 1.10528 1.33323 0.85801 0.78715 0.77263 0.81449 1.20341 1.20678 1.19977 1.19791 0.82015 1.04182 0.86458 1.23018 1.06329 0.82616 0.96948 1.21704 1.06143 1.00101 0.93119 1.22097 1.08864 0.94323 0.99523 1.24713 1.04900 0.98714 0.83337 1.84057 1.69773 1.33667 1.21341 0.92286 0.92791 0.91348 0.92229 0.91389 0.94216 0.91437 0.95567 0.89820 0.91727 0.91741 0.88561 0.94999 0.95178 0.92483 0.86017 0.89223 0.83963 0.81832 0.74905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.11 -2.59 5.86 30.59 0.18 -2.41 16 3 C 0.05 1.49 4.96 86.30 0.43 1.91 16 4 N -0.54 -18.34 4.50 -927.04 -4.17 -22.52 16 5 C 0.02 0.73 9.01 127.69 1.15 1.88 16 6 C 0.05 2.03 4.00 85.56 0.34 2.37 16 7 C 0.52 21.85 7.40 87.66 0.65 22.50 16 8 O -0.57 -25.76 13.89 -3.04 -0.04 -25.81 16 9 N -0.60 -24.85 2.44 -830.50 -2.03 -26.87 16 10 C 0.25 11.48 5.01 85.63 0.43 11.91 16 11 C -0.52 -26.44 9.04 25.60 0.23 -26.21 16 12 H 0.05 2.47 7.65 -2.91 -0.02 2.45 16 13 C 0.03 1.47 5.46 84.65 0.46 1.93 16 14 N -0.92 -49.10 13.29 21.45 0.28 -48.82 16 15 Si 0.94 41.84 29.54 68.60 2.03 43.87 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C 0.20 7.39 5.98 85.63 0.51 7.90 16 20 C -0.04 -1.50 6.90 24.83 0.17 -1.33 16 21 C -0.19 -7.22 10.40 22.19 0.23 -6.99 16 22 C -0.23 -7.54 10.91 22.19 0.24 -7.30 16 23 C -0.05 -1.55 12.09 66.97 0.81 -0.74 16 24 O -0.19 -7.55 10.65 -2.58 -0.03 -7.57 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.44 6.47 -2.39 -0.02 1.43 16 30 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 31 H 0.07 1.96 7.93 -2.39 -0.02 1.94 16 32 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 2.15 6.30 -2.39 -0.02 2.14 16 34 H 0.06 2.27 5.88 -2.39 -0.01 2.25 16 35 H 0.06 2.35 7.38 -2.38 -0.02 2.34 16 36 H 0.10 3.99 7.79 -2.39 -0.02 3.97 16 37 H 0.03 1.51 6.44 -2.38 -0.02 1.49 16 38 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 39 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 40 H 0.12 3.93 7.89 -2.39 -0.02 3.91 16 41 H 0.09 3.24 7.42 -2.39 -0.02 3.22 16 42 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 43 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.23 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -62.06 362.93 3.57 -58.49 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.97 Total: 25.74 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.55 Total: 3.48 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -5.91 Total: -98.21 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.07 Total: -33.38 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -62.06 3.57 -58.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358605661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.333 kcal (2) G-P(sol) polarization free energy of solvation -62.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds