Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00006 * 2 1 4 4 N 1.46495 * 109.47072 * 123.68860 * 3 2 1 5 5 C 1.46505 * 120.00086 * 87.65670 * 4 3 2 6 6 C 1.50702 * 109.46762 * 87.97020 * 5 4 3 7 7 H 1.08001 * 120.00466 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99788 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00294 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 120.00136 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47142 * 269.99987 * 10 8 6 12 12 H 1.48501 * 109.46823 * 30.00002 * 10 8 6 13 13 H 1.48499 * 109.47042 * 149.99813 * 10 8 6 14 14 C 1.34775 * 120.00365 * 267.65716 * 4 3 2 15 15 O 1.21282 * 119.99595 * 5.06258 * 14 4 3 16 16 C 1.50693 * 120.00294 * 185.06041 * 14 4 3 17 17 H 1.09004 * 109.47210 * 326.70022 * 16 14 4 18 18 C 1.53003 * 109.47146 * 86.70269 * 16 14 4 19 19 C 1.52998 * 109.47272 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47022 * 299.99346 * 19 18 16 21 21 C 1.53008 * 109.46871 * 60.00077 * 20 19 18 22 22 H 1.09004 * 109.46997 * 60.00039 * 21 20 19 23 23 C 1.50702 * 109.47090 * 179.97438 * 21 20 19 24 24 N 1.34774 * 119.99873 * 299.99933 * 23 21 20 25 25 O 1.21278 * 119.99611 * 120.00240 * 23 21 20 26 26 C 1.52998 * 109.47067 * 300.00147 * 21 20 19 27 27 H 1.08004 * 120.00224 * 5.62483 * 1 2 3 28 28 H 1.08001 * 120.00524 * 185.62677 * 1 2 3 29 29 H 1.07996 * 119.99950 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47282 * 3.68943 * 3 2 1 31 31 H 1.09001 * 109.46760 * 243.69071 * 3 2 1 32 32 H 1.09003 * 109.46757 * 327.97414 * 5 4 3 33 33 H 1.08994 * 109.47120 * 207.97100 * 5 4 3 34 34 H 0.96994 * 120.00245 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46286 * 299.99905 * 18 16 14 36 36 H 1.08990 * 109.47362 * 59.99634 * 18 16 14 37 37 H 1.09004 * 109.47329 * 59.99603 * 19 18 16 38 38 H 1.09005 * 109.47143 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.47106 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47520 * 300.00447 * 20 19 18 41 41 H 0.97001 * 120.00598 * 0.02562 * 24 23 21 42 42 H 0.97006 * 120.00138 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.47133 * 299.99512 * 26 21 20 44 44 H 1.09005 * 109.46975 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9711 1.3450 1.1492 5 6 4.3223 0.7903 1.0351 6 6 5.2598 1.8530 0.5224 7 1 4.8866 2.8427 0.3039 8 6 6.5940 1.5619 0.3324 9 7 7.4123 2.4894 -0.1145 10 14 7.2394 -0.1501 0.7097 11 1 7.6836 -0.2107 2.1253 12 1 6.1608 -1.1460 0.4861 13 1 8.3868 -0.4543 -0.1827 14 6 2.5632 1.8918 2.3115 15 8 1.4167 2.2675 2.4355 16 6 3.5315 2.0364 3.4571 17 1 4.2368 1.2054 3.4438 18 6 4.2943 3.3552 3.3167 19 6 5.2779 3.5017 4.4795 20 6 4.5086 3.4960 5.8020 21 6 3.7457 2.1771 5.9424 22 1 4.4510 1.3461 5.9287 23 6 2.9885 2.1711 7.2454 24 7 3.6534 2.2884 8.4118 25 8 1.7807 2.0607 7.2442 26 6 2.7622 2.0306 4.7796 27 1 -0.5401 0.9308 -0.0917 28 1 -0.5401 -0.9308 0.0917 29 1 1.8499 -0.9353 -0.0004 30 1 1.3571 2.1325 0.0661 31 1 2.6396 1.3920 -0.9212 32 1 4.3124 -0.0507 0.3418 33 1 4.6593 0.4501 2.0142 34 1 8.3509 2.2844 -0.2486 35 1 4.8427 3.3591 2.3747 36 1 3.5891 4.1861 3.3300 37 1 5.9832 2.6708 4.4657 38 1 5.8217 4.4411 4.3792 39 1 5.2094 3.5999 6.6303 40 1 3.8034 4.3269 5.8158 41 1 4.6194 2.3770 8.4127 42 1 3.1660 2.2849 9.2505 43 1 2.0569 2.8615 4.7934 44 1 2.2190 1.0908 4.8795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359382760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -75.586512 kcal Electronic energy + Delta-G solvation = -24891.614481 eV Core-core repulsion = 21422.443453 eV Total energy + Delta-G solvation = -3469.171027 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24754 -39.18445 -36.91490 -35.44243 -33.79821 -33.47434 -32.22702 -30.71710 -30.56058 -28.08247 -25.92893 -23.78161 -22.97851 -22.27051 -20.76835 -19.76126 -19.35324 -18.25320 -17.44933 -17.05093 -16.55364 -16.33809 -15.49943 -15.07596 -14.72135 -14.53042 -14.22137 -14.00352 -13.73506 -13.40024 -13.29122 -12.84496 -12.62725 -12.53709 -12.14784 -12.04948 -11.79442 -11.42451 -11.23756 -11.05025 -10.91557 -10.75941 -10.60571 -10.46910 -10.29892 -10.23992 -9.99754 -9.74780 -9.69209 -9.50077 -9.22296 -8.80914 -8.69385 -7.75667 -6.25346 -4.25715 2.53830 2.66035 3.12836 3.22303 3.24102 3.37500 3.48925 3.99915 4.22870 4.73424 4.86399 4.90500 5.05090 5.27270 5.32715 5.43179 5.49171 5.51060 5.57371 5.66075 5.72201 5.78951 5.88963 6.02101 6.16105 6.18438 6.27834 6.30066 6.33749 6.43263 6.51827 6.58830 6.66131 6.71192 6.83540 6.90927 7.02030 7.08419 7.26213 7.34289 7.43034 8.13147 8.25180 8.40463 8.78992 8.97923 9.34531 10.86728 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.006203 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.556610 B = 4513.073663 C = 6129.919288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.144 3.856 4 N -0.588 5.588 5 C 0.206 3.794 6 C -0.535 4.535 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.867 3.133 11 H -0.273 1.273 12 H -0.265 1.265 13 H -0.284 1.284 14 C 0.523 3.477 15 O -0.564 6.564 16 C -0.098 4.098 17 H 0.093 0.907 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.107 4.107 22 H 0.098 0.902 23 C 0.522 3.478 24 N -0.860 5.860 25 O -0.540 6.540 26 C -0.080 4.080 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.401 0.599 42 H 0.397 0.603 43 H 0.079 0.921 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -1.949 10.798 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.021 3.979 4 N -0.317 5.317 5 C 0.085 3.915 6 C -0.574 4.574 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.693 3.307 11 H -0.199 1.199 12 H -0.190 1.190 13 H -0.210 1.210 14 C 0.312 3.688 15 O -0.444 6.444 16 C -0.119 4.119 17 H 0.111 0.889 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.129 4.129 22 H 0.116 0.884 23 C 0.307 3.693 24 N -0.423 5.423 25 O -0.416 6.416 26 C -0.119 4.119 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.229 0.771 42 H 0.227 0.773 43 H 0.097 0.903 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.547 -1.799 10.579 11.302 hybrid contribution 1.005 -1.023 0.488 1.515 sum -2.542 -2.822 11.067 11.701 Atomic orbital electron populations 1.23734 0.95871 1.01442 1.01231 1.23376 0.96172 0.99304 0.99268 1.20367 0.92783 0.94808 0.89906 1.47880 1.14948 1.58295 1.10591 1.19873 0.79086 0.95238 0.97345 1.21335 0.92414 0.98683 1.44929 0.90080 1.24839 0.96694 0.96586 0.94372 1.69883 1.04725 1.33195 1.44843 0.86996 0.79311 0.85466 0.78897 1.19857 1.18952 1.20966 1.20450 0.87952 0.76620 0.83791 1.90606 1.19888 1.51169 1.82720 1.21241 0.96993 1.01184 0.92527 0.88897 1.21610 0.97858 0.94584 1.01256 1.21461 0.97776 1.02485 0.93111 1.21578 0.98664 0.95673 0.98775 1.21381 0.98554 1.00669 0.92283 0.88409 1.20819 0.87981 0.74476 0.86043 1.43927 1.11782 1.78043 1.08591 1.90748 1.14530 1.48620 1.87706 1.21181 0.96298 1.03853 0.90523 0.88620 0.89024 0.87747 0.90341 0.89579 0.95004 0.95064 0.92388 0.87494 0.92480 0.91406 0.91367 0.91975 0.91453 0.77110 0.77265 0.90267 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 14.31 29.02 0.42 -2.33 16 2 C -0.16 -2.65 9.85 -36.02 -0.35 -3.01 16 3 C 0.14 2.66 5.85 -5.19 -0.03 2.63 16 4 N -0.59 -11.93 2.44 -176.44 -0.43 -12.36 16 5 C 0.21 4.37 4.04 -5.19 -0.02 4.35 16 6 C -0.54 -13.13 8.15 -34.44 -0.28 -13.41 16 7 H 0.08 2.23 7.66 -52.49 -0.40 1.83 16 8 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.89 -24.43 13.96 55.43 0.77 -23.66 16 10 Si 0.87 18.90 27.47 -169.99 -4.67 14.23 16 11 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 C 0.52 10.77 6.75 -10.99 -0.07 10.69 16 15 O -0.56 -12.88 15.72 5.56 0.09 -12.79 16 16 C -0.10 -1.74 1.94 -91.77 -0.18 -1.92 16 17 H 0.09 1.62 5.90 -51.93 -0.31 1.31 16 18 C -0.12 -1.99 5.19 -26.73 -0.14 -2.13 16 19 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 20 C -0.11 -1.26 5.10 -26.73 -0.14 -1.39 16 21 C -0.11 -1.37 2.52 -91.77 -0.23 -1.60 16 22 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 23 C 0.52 6.84 7.43 -10.99 -0.08 6.76 16 24 N -0.86 -7.21 8.77 31.22 0.27 -6.94 16 25 O -0.54 -9.59 16.82 5.56 0.09 -9.49 16 26 C -0.08 -1.32 3.33 -26.73 -0.09 -1.41 16 27 H 0.10 1.41 7.86 -52.48 -0.41 0.99 16 28 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.08 1.48 7.08 -51.93 -0.37 1.11 16 31 H 0.09 1.56 8.09 -51.93 -0.42 1.14 16 32 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 33 H 0.03 0.64 5.26 -51.93 -0.27 0.37 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.11 2.19 5.73 -51.93 -0.30 1.89 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.54 7.56 -51.93 -0.39 0.14 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.40 2.21 8.25 -40.82 -0.34 1.87 16 42 H 0.40 2.87 8.93 -40.82 -0.36 2.51 16 43 H 0.08 1.47 7.82 -51.93 -0.41 1.06 16 44 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -31.34 352.28 -6.92 -38.26 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.90 Total: 9.98 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.46 Total: -2.54 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.62 Total: -42.95 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.18 Total: -22.28 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.67 Total: 14.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.34 -6.92 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.330 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds