Wall clock time and date at job start Tue Mar 31 2020 06:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00006 * 2 1 4 4 N 1.46495 * 109.47072 * 123.68860 * 3 2 1 5 5 C 1.46505 * 120.00086 * 87.65670 * 4 3 2 6 6 C 1.50702 * 109.46762 * 87.97020 * 5 4 3 7 7 H 1.08001 * 120.00466 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99788 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00294 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 120.00136 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47142 * 269.99987 * 10 8 6 12 12 H 1.48501 * 109.46823 * 30.00002 * 10 8 6 13 13 H 1.48499 * 109.47042 * 149.99813 * 10 8 6 14 14 C 1.34775 * 120.00365 * 267.65716 * 4 3 2 15 15 O 1.21282 * 119.99595 * 5.06258 * 14 4 3 16 16 C 1.50693 * 120.00294 * 185.06041 * 14 4 3 17 17 H 1.09004 * 109.47210 * 326.70022 * 16 14 4 18 18 C 1.53003 * 109.47146 * 86.70269 * 16 14 4 19 19 C 1.52998 * 109.47272 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47022 * 299.99346 * 19 18 16 21 21 C 1.53008 * 109.46871 * 60.00077 * 20 19 18 22 22 H 1.09004 * 109.46997 * 60.00039 * 21 20 19 23 23 C 1.50702 * 109.47090 * 179.97438 * 21 20 19 24 24 N 1.34774 * 119.99873 * 299.99933 * 23 21 20 25 25 O 1.21278 * 119.99611 * 120.00240 * 23 21 20 26 26 C 1.52998 * 109.47067 * 300.00147 * 21 20 19 27 27 H 1.08004 * 120.00224 * 5.62483 * 1 2 3 28 28 H 1.08001 * 120.00524 * 185.62677 * 1 2 3 29 29 H 1.07996 * 119.99950 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47282 * 3.68943 * 3 2 1 31 31 H 1.09001 * 109.46760 * 243.69071 * 3 2 1 32 32 H 1.09003 * 109.46757 * 327.97414 * 5 4 3 33 33 H 1.08994 * 109.47120 * 207.97100 * 5 4 3 34 34 H 0.96994 * 120.00245 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46286 * 299.99905 * 18 16 14 36 36 H 1.08990 * 109.47362 * 59.99634 * 18 16 14 37 37 H 1.09004 * 109.47329 * 59.99603 * 19 18 16 38 38 H 1.09005 * 109.47143 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.47106 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47520 * 300.00447 * 20 19 18 41 41 H 0.97001 * 120.00598 * 0.02562 * 24 23 21 42 42 H 0.97006 * 120.00138 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.47133 * 299.99512 * 26 21 20 44 44 H 1.09005 * 109.46975 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9711 1.3450 1.1492 5 6 4.3223 0.7903 1.0351 6 6 5.2598 1.8530 0.5224 7 1 4.8866 2.8427 0.3039 8 6 6.5940 1.5619 0.3324 9 7 7.4123 2.4894 -0.1145 10 14 7.2394 -0.1501 0.7097 11 1 7.6836 -0.2107 2.1253 12 1 6.1608 -1.1460 0.4861 13 1 8.3868 -0.4543 -0.1827 14 6 2.5632 1.8918 2.3115 15 8 1.4167 2.2675 2.4355 16 6 3.5315 2.0364 3.4571 17 1 4.2368 1.2054 3.4438 18 6 4.2943 3.3552 3.3167 19 6 5.2779 3.5017 4.4795 20 6 4.5086 3.4960 5.8020 21 6 3.7457 2.1771 5.9424 22 1 4.4510 1.3461 5.9287 23 6 2.9885 2.1711 7.2454 24 7 3.6534 2.2884 8.4118 25 8 1.7807 2.0607 7.2442 26 6 2.7622 2.0306 4.7796 27 1 -0.5401 0.9308 -0.0917 28 1 -0.5401 -0.9308 0.0917 29 1 1.8499 -0.9353 -0.0004 30 1 1.3571 2.1325 0.0661 31 1 2.6396 1.3920 -0.9212 32 1 4.3124 -0.0507 0.3418 33 1 4.6593 0.4501 2.0142 34 1 8.3509 2.2844 -0.2486 35 1 4.8427 3.3591 2.3747 36 1 3.5891 4.1861 3.3300 37 1 5.9832 2.6708 4.4657 38 1 5.8217 4.4411 4.3792 39 1 5.2094 3.5999 6.6303 40 1 3.8034 4.3269 5.8158 41 1 4.6194 2.3770 8.4127 42 1 3.1660 2.2849 9.2505 43 1 2.0569 2.8615 4.7934 44 1 2.2190 1.0908 4.8795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359382760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:08 Heat of formation + Delta-G solvation = -97.411138 kcal Electronic energy + Delta-G solvation = -24892.560867 eV Core-core repulsion = 21422.443453 eV Total energy + Delta-G solvation = -3470.117414 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56309 -40.53064 -38.18253 -37.08913 -35.14433 -34.66905 -33.97846 -31.93049 -31.79271 -29.89189 -27.40607 -24.94371 -24.62759 -23.76688 -21.93793 -20.92005 -20.58855 -19.79030 -18.94183 -18.51638 -17.81121 -17.64710 -16.97793 -16.38166 -16.23793 -15.78690 -15.71347 -15.29999 -15.04104 -14.79690 -14.61874 -14.36028 -14.22152 -13.93412 -13.68287 -13.37633 -13.11935 -13.06929 -12.71673 -12.50317 -12.30023 -12.19732 -12.04585 -11.93862 -11.68204 -11.63134 -11.46158 -11.31019 -10.78161 -10.68001 -10.62947 -10.59633 -10.20406 -9.44789 -8.21786 -6.27074 1.25120 1.43361 1.47570 1.54870 1.66051 1.73964 2.37831 2.40085 2.68294 3.11479 3.54605 3.75587 3.82386 3.93960 4.04346 4.17240 4.22945 4.27932 4.38833 4.46420 4.47796 4.53683 4.58664 4.70642 4.74845 4.78623 4.91685 5.00554 5.06544 5.10509 5.18216 5.24833 5.34406 5.49344 5.52443 5.52554 5.64328 5.68464 5.85295 5.95395 6.25136 6.50540 6.64908 6.76686 7.28932 7.39849 7.40383 8.93625 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.006203 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.556610 B = 4513.073663 C = 6129.919288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.141 3.859 4 N -0.591 5.591 5 C 0.213 3.787 6 C -0.527 4.527 7 H 0.036 0.964 8 C 0.028 3.972 9 N -0.938 5.938 10 Si 0.929 3.071 11 H -0.254 1.254 12 H -0.246 1.246 13 H -0.291 1.291 14 C 0.514 3.486 15 O -0.593 6.593 16 C -0.092 4.092 17 H 0.102 0.898 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.100 4.100 21 C -0.102 4.102 22 H 0.125 0.875 23 C 0.523 3.477 24 N -0.832 5.832 25 O -0.595 6.595 26 C -0.071 4.071 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.267 0.733 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.419 0.581 42 H 0.407 0.593 43 H 0.050 0.950 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -3.989 13.051 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C 0.018 3.982 4 N -0.320 5.320 5 C 0.092 3.908 6 C -0.565 4.565 7 H 0.054 0.946 8 C -0.171 4.171 9 N -0.577 5.577 10 Si 0.752 3.248 11 H -0.179 1.179 12 H -0.170 1.170 13 H -0.217 1.217 14 C 0.303 3.697 15 O -0.475 6.475 16 C -0.113 4.113 17 H 0.120 0.880 18 C -0.149 4.149 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.124 4.124 22 H 0.143 0.857 23 C 0.308 3.692 24 N -0.396 5.396 25 O -0.475 6.475 26 C -0.110 4.110 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.251 0.749 42 H 0.239 0.761 43 H 0.069 0.931 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.430 -3.838 12.864 13.643 hybrid contribution 0.592 -0.273 -0.283 0.711 sum -1.838 -4.112 12.581 13.363 Atomic orbital electron populations 1.23963 0.95424 1.02602 0.98586 1.23255 0.96667 0.98283 1.01666 1.20425 0.92535 0.96048 0.89182 1.47980 1.14897 1.58054 1.11073 1.19754 0.78730 0.94213 0.98121 1.21343 0.93157 0.97622 1.44382 0.94594 1.25610 0.96752 1.00634 0.94121 1.70036 1.05127 1.35743 1.46829 0.85987 0.78775 0.80557 0.79431 1.17868 1.16979 1.21684 1.21060 0.88124 0.75937 0.84550 1.90579 1.21246 1.52332 1.83339 1.21247 0.96497 1.01499 0.92039 0.87963 1.21504 0.97977 0.94010 1.01383 1.21434 0.97041 1.03243 0.92589 1.21547 0.98866 0.94529 0.98852 1.21345 0.97919 1.02448 0.90647 0.85679 1.20795 0.87212 0.74064 0.87126 1.43666 1.12786 1.75621 1.07568 1.90739 1.16827 1.51548 1.88433 1.21026 0.96552 1.01912 0.91520 0.88917 0.86305 0.86627 0.91594 0.90032 0.94069 0.93283 0.92406 0.91179 0.93779 0.90604 0.90609 0.87571 0.92392 0.74898 0.76149 0.93123 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 14.31 67.79 0.97 -3.79 16 2 C -0.18 -5.75 9.85 25.65 0.25 -5.50 16 3 C 0.14 5.32 5.85 85.63 0.50 5.82 16 4 N -0.59 -24.40 2.44 -830.51 -2.03 -26.42 16 5 C 0.21 8.93 4.04 85.63 0.35 9.27 16 6 C -0.53 -26.37 8.15 25.60 0.21 -26.16 16 7 H 0.04 2.09 7.66 -2.91 -0.02 2.07 16 8 C 0.03 1.43 5.47 84.65 0.46 1.90 16 9 N -0.94 -52.69 13.96 21.45 0.30 -52.39 16 10 Si 0.93 37.65 27.47 68.60 1.88 39.53 16 11 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 12 H -0.25 -9.18 6.54 99.48 0.65 -8.53 16 13 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.51 21.68 6.75 87.65 0.59 22.28 16 15 O -0.59 -28.11 15.72 -3.04 -0.05 -28.16 16 16 C -0.09 -3.25 1.94 -11.54 -0.02 -3.28 16 17 H 0.10 3.40 5.90 -2.38 -0.01 3.39 16 18 C -0.11 -3.89 5.19 30.59 0.16 -3.73 16 19 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 20 C -0.10 -2.01 5.10 30.60 0.16 -1.86 16 21 C -0.10 -2.37 2.52 -11.54 -0.03 -2.39 16 22 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 23 C 0.52 12.56 7.43 87.66 0.65 13.21 16 24 N -0.83 -10.93 8.77 -173.54 -1.52 -12.45 16 25 O -0.60 -20.84 16.82 -3.02 -0.05 -20.89 16 26 C -0.07 -2.35 3.33 30.59 0.10 -2.25 16 27 H 0.09 2.67 7.86 -2.91 -0.02 2.65 16 28 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.07 2.61 7.08 -2.39 -0.02 2.60 16 31 H 0.08 3.08 8.09 -2.39 -0.02 3.06 16 32 H 0.04 1.67 7.14 -2.39 -0.02 1.66 16 33 H 0.05 1.90 5.26 -2.39 -0.01 1.89 16 34 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.07 3.00 5.73 -2.39 -0.01 2.99 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.11 1.27 7.56 -2.39 -0.02 1.25 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.42 2.55 8.25 -92.71 -0.76 1.79 16 42 H 0.41 4.54 8.93 -92.70 -0.83 3.71 16 43 H 0.05 1.94 7.82 -2.39 -0.02 1.92 16 44 H 0.05 1.84 8.10 -2.38 -0.02 1.82 16 Total: -1.00 -71.91 352.28 2.43 -69.48 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.64 Total: 30.31 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.53 Total: 0.99 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.25 Total: -91.26 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.10 Total: -49.05 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.88 Total: 39.53 kcal Total: -71.91 2.43 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.929 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds