Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00302 * 2 1 4 4 N 1.46503 * 109.47322 * 123.82716 * 3 2 1 5 5 C 1.46496 * 119.99656 * 95.43735 * 4 3 2 6 6 C 1.50707 * 109.47287 * 276.15955 * 5 4 3 7 7 H 1.07998 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00056 * 180.27807 * 6 5 4 9 9 N 1.31511 * 119.99871 * 359.72408 * 8 6 5 10 10 Si 1.86799 * 119.99867 * 179.72350 * 8 6 5 11 11 H 1.48500 * 109.46757 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46826 * 120.00071 * 10 8 6 13 13 H 1.48497 * 109.46890 * 239.99951 * 10 8 6 14 14 C 1.34765 * 119.99815 * 275.43640 * 4 3 2 15 15 O 1.21278 * 120.00443 * 4.86882 * 14 4 3 16 16 C 1.50699 * 119.99815 * 184.86665 * 14 4 3 17 17 H 1.08997 * 109.47112 * 306.49446 * 16 14 4 18 18 C 1.52995 * 109.47216 * 66.49892 * 16 14 4 19 19 C 1.53001 * 109.47405 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47210 * 300.00153 * 19 18 16 21 21 C 1.52999 * 109.47389 * 59.99562 * 20 19 18 22 22 H 1.08995 * 109.46978 * 180.02562 * 21 20 19 23 23 C 1.50697 * 109.46722 * 60.00112 * 21 20 19 24 24 N 1.34778 * 120.00005 * 60.00535 * 23 21 20 25 25 O 1.21280 * 120.00209 * 239.99903 * 23 21 20 26 26 C 1.52994 * 109.47048 * 300.00251 * 21 20 19 27 27 H 1.07997 * 119.99883 * 5.10442 * 1 2 3 28 28 H 1.07997 * 120.00309 * 185.09462 * 1 2 3 29 29 H 1.08001 * 119.99936 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47187 * 3.82223 * 3 2 1 31 31 H 1.09002 * 109.46994 * 243.82895 * 3 2 1 32 32 H 1.09000 * 109.47276 * 156.16313 * 5 4 3 33 33 H 1.08998 * 109.47516 * 36.16373 * 5 4 3 34 34 H 0.97000 * 119.99946 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47231 * 299.99812 * 18 16 14 36 36 H 1.08997 * 109.47444 * 59.99758 * 18 16 14 37 37 H 1.08998 * 109.47257 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.46844 * 60.00004 * 19 18 16 39 39 H 1.09010 * 109.46853 * 299.99867 * 20 19 18 40 40 H 1.08999 * 109.47281 * 179.97438 * 20 19 18 41 41 H 0.96996 * 120.00181 * 359.97438 * 24 23 21 42 42 H 0.96999 * 120.00137 * 179.97438 * 24 23 21 43 43 H 1.08994 * 109.47651 * 299.99897 * 26 21 20 44 44 H 1.09007 * 109.47211 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9737 1.3435 1.1474 5 6 4.3746 0.9474 0.9846 6 6 4.4892 -0.5512 1.0961 7 1 3.6066 -1.1487 1.2703 8 6 5.7215 -1.1589 0.9808 9 7 6.7961 -0.4312 0.7682 10 14 5.8645 -3.0157 1.1267 11 1 4.5193 -3.5986 1.3630 12 1 6.4294 -3.5688 -0.1303 13 1 6.7584 -3.3555 2.2627 14 6 2.5220 1.7433 2.3525 15 8 1.3442 1.9865 2.5086 16 6 3.4806 1.8881 3.5063 17 1 4.0380 0.9602 3.6342 18 6 4.4545 3.0327 3.2197 19 6 5.4273 3.1802 4.3913 20 6 4.6438 3.4853 5.6695 21 6 3.6698 2.3407 5.9562 22 1 3.1113 2.5583 6.8666 23 6 4.4406 1.0579 6.1336 24 7 5.3613 0.9548 7.1125 25 8 4.2323 0.1183 5.3957 26 6 2.6970 2.1933 4.7846 27 1 -0.5400 0.9316 -0.0832 28 1 -0.5400 -0.9316 0.0831 29 1 1.8500 -0.9353 0.0004 30 1 1.3573 2.1324 0.0685 31 1 2.6378 1.3930 -0.9223 32 1 4.9776 1.4166 1.7620 33 1 4.7313 1.2672 0.0056 34 1 7.6631 -0.8587 0.6875 35 1 5.0125 2.8155 2.3088 36 1 3.8971 3.9606 3.0917 37 1 6.1214 3.9953 4.1869 38 1 5.9848 2.2523 4.5196 39 1 4.0862 4.4132 5.5412 40 1 5.3368 3.5899 6.5043 41 1 5.5281 1.7064 7.7025 42 1 5.8571 0.1291 7.2269 43 1 2.1396 3.1210 4.6562 44 1 2.0034 1.3775 4.9887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359382767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -67.385627 kcal Electronic energy + Delta-G solvation = -25522.099179 eV Core-core repulsion = 22053.283769 eV Total energy + Delta-G solvation = -3468.815410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45244 -38.86200 -36.50691 -35.25484 -33.68917 -33.20732 -32.08540 -30.66714 -30.42713 -27.31472 -25.68666 -23.80003 -23.00778 -22.31731 -21.16994 -19.46924 -19.08208 -18.26244 -17.02717 -16.53036 -16.19969 -16.09007 -15.61639 -14.85084 -14.54725 -14.45275 -14.20461 -13.89649 -13.73860 -13.28532 -12.95168 -12.60431 -12.33487 -12.13713 -11.96631 -11.89977 -11.69366 -11.51019 -11.16781 -10.84952 -10.79160 -10.75715 -10.56650 -10.47221 -10.23664 -9.95273 -9.81526 -9.50635 -9.42570 -9.25390 -8.96793 -8.57800 -8.36612 -7.59557 -6.06672 -4.10407 2.84032 2.90980 3.30425 3.38073 3.44104 3.61065 3.70375 4.18723 4.45888 4.82295 4.88998 4.92995 5.23604 5.27410 5.49188 5.52212 5.59834 5.61330 5.62689 5.76562 5.79423 5.84045 6.02760 6.07482 6.18662 6.26574 6.31555 6.33723 6.47155 6.50234 6.55170 6.71787 6.86415 6.91723 7.09233 7.23546 7.32908 7.39379 7.49288 7.69351 7.89531 8.19856 8.50520 8.53304 8.93401 9.19254 9.56156 11.00413 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.007432 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.913141 B = 3766.592546 C = 5157.881622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.593 5.593 5 C 0.225 3.775 6 C -0.525 4.525 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.524 3.476 15 O -0.575 6.575 16 C -0.114 4.114 17 H 0.134 0.866 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.108 4.108 22 H 0.094 0.906 23 C 0.515 3.485 24 N -0.862 5.862 25 O -0.515 6.515 26 C -0.076 4.076 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.396 0.604 42 H 0.398 0.602 43 H 0.071 0.929 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 8.414 9.924 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.165 4.165 3 C 0.027 3.973 4 N -0.323 5.323 5 C 0.106 3.894 6 C -0.564 4.564 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.534 5.534 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.313 3.687 15 O -0.457 6.457 16 C -0.135 4.135 17 H 0.151 0.849 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.130 4.130 22 H 0.112 0.888 23 C 0.299 3.701 24 N -0.426 5.426 25 O -0.389 6.389 26 C -0.114 4.114 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.224 0.776 42 H 0.229 0.771 43 H 0.090 0.910 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.532 8.026 9.361 12.588 hybrid contribution 0.653 -1.261 0.441 1.487 sum -1.879 6.765 9.802 12.057 Atomic orbital electron populations 1.23623 0.95921 1.00890 1.03189 1.23468 0.95846 0.99864 0.97342 1.20305 0.92602 0.94780 0.89621 1.48187 1.12774 1.63594 1.07728 1.19763 0.75323 0.95851 0.98469 1.21545 0.93638 0.91986 1.49224 0.92053 1.24879 0.95607 0.98295 0.94915 1.69923 0.98627 1.35278 1.49554 0.86502 0.78268 0.85628 0.77468 1.19730 1.21102 1.20950 1.20508 0.88439 0.75840 0.83904 1.90556 1.17942 1.53407 1.83750 1.21499 0.96690 1.02927 0.92393 0.84853 1.21723 0.96960 0.97313 0.99465 1.21541 0.97796 1.02060 0.94284 1.21557 0.97451 0.97309 0.98305 1.21411 0.97418 0.93160 1.01004 0.88761 1.20708 0.79748 0.89947 0.79652 1.43913 1.43207 1.19519 1.35964 1.90807 1.65338 1.40032 1.42768 1.21105 0.96038 1.02526 0.91744 0.89194 0.89313 0.86806 0.91415 0.90334 0.92572 0.95180 0.92875 0.89506 0.92470 0.91625 0.91506 0.90790 0.91925 0.77634 0.77121 0.91033 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.49 14.31 29.01 0.42 -3.08 16 2 C -0.15 -2.90 9.76 -36.03 -0.35 -3.25 16 3 C 0.15 3.00 5.79 -5.19 -0.03 2.97 16 4 N -0.59 -13.23 2.46 -176.44 -0.43 -13.66 16 5 C 0.23 5.53 4.63 -5.19 -0.02 5.50 16 6 C -0.53 -14.35 9.37 -34.44 -0.32 -14.67 16 7 H 0.06 1.74 6.94 -52.49 -0.36 1.38 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.52 11.65 6.92 -10.99 -0.08 11.57 16 15 O -0.58 -13.61 15.70 5.56 0.09 -13.52 16 16 C -0.11 -2.24 1.39 -91.77 -0.13 -2.37 16 17 H 0.13 3.09 5.05 -51.93 -0.26 2.83 16 18 C -0.12 -1.97 4.81 -26.73 -0.13 -2.10 16 19 C -0.12 -1.65 5.70 -26.73 -0.15 -1.80 16 20 C -0.11 -1.16 5.36 -26.73 -0.14 -1.31 16 21 C -0.11 -1.37 3.01 -91.78 -0.28 -1.65 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 C 0.51 7.63 5.91 -10.99 -0.06 7.57 16 24 N -0.86 -8.79 8.77 31.22 0.27 -8.52 16 25 O -0.52 -10.61 14.49 5.56 0.08 -10.53 16 26 C -0.08 -1.26 3.69 -26.73 -0.10 -1.36 16 27 H 0.09 1.49 7.85 -52.49 -0.41 1.08 16 28 H 0.09 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.11 2.44 7.23 -52.49 -0.38 2.06 16 30 H 0.07 1.30 7.32 -51.93 -0.38 0.92 16 31 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 32 H 0.06 1.39 3.98 -51.93 -0.21 1.19 16 33 H 0.03 0.77 7.96 -51.93 -0.41 0.35 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.09 1.64 5.37 -51.93 -0.28 1.36 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.06 7.22 -51.93 -0.37 0.69 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 41 H 0.40 2.59 8.25 -40.82 -0.34 2.25 16 42 H 0.40 3.95 8.93 -40.82 -0.36 3.58 16 43 H 0.07 1.13 8.03 -51.93 -0.42 0.71 16 44 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -33.25 348.30 -7.17 -40.42 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.66 Total: 10.46 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.48 Total: -2.27 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.58 Total: -46.69 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.25 -7.17 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.968 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds