Wall clock time and date at job start Tue Mar 31 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00302 * 2 1 4 4 N 1.46503 * 109.47322 * 123.82716 * 3 2 1 5 5 C 1.46496 * 119.99656 * 95.43735 * 4 3 2 6 6 C 1.50707 * 109.47287 * 276.15955 * 5 4 3 7 7 H 1.07998 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00056 * 180.27807 * 6 5 4 9 9 N 1.31511 * 119.99871 * 359.72408 * 8 6 5 10 10 Si 1.86799 * 119.99867 * 179.72350 * 8 6 5 11 11 H 1.48500 * 109.46757 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46826 * 120.00071 * 10 8 6 13 13 H 1.48497 * 109.46890 * 239.99951 * 10 8 6 14 14 C 1.34765 * 119.99815 * 275.43640 * 4 3 2 15 15 O 1.21278 * 120.00443 * 4.86882 * 14 4 3 16 16 C 1.50699 * 119.99815 * 184.86665 * 14 4 3 17 17 H 1.08997 * 109.47112 * 306.49446 * 16 14 4 18 18 C 1.52995 * 109.47216 * 66.49892 * 16 14 4 19 19 C 1.53001 * 109.47405 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47210 * 300.00153 * 19 18 16 21 21 C 1.52999 * 109.47389 * 59.99562 * 20 19 18 22 22 H 1.08995 * 109.46978 * 180.02562 * 21 20 19 23 23 C 1.50697 * 109.46722 * 60.00112 * 21 20 19 24 24 N 1.34778 * 120.00005 * 60.00535 * 23 21 20 25 25 O 1.21280 * 120.00209 * 239.99903 * 23 21 20 26 26 C 1.52994 * 109.47048 * 300.00251 * 21 20 19 27 27 H 1.07997 * 119.99883 * 5.10442 * 1 2 3 28 28 H 1.07997 * 120.00309 * 185.09462 * 1 2 3 29 29 H 1.08001 * 119.99936 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47187 * 3.82223 * 3 2 1 31 31 H 1.09002 * 109.46994 * 243.82895 * 3 2 1 32 32 H 1.09000 * 109.47276 * 156.16313 * 5 4 3 33 33 H 1.08998 * 109.47516 * 36.16373 * 5 4 3 34 34 H 0.97000 * 119.99946 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47231 * 299.99812 * 18 16 14 36 36 H 1.08997 * 109.47444 * 59.99758 * 18 16 14 37 37 H 1.08998 * 109.47257 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.46844 * 60.00004 * 19 18 16 39 39 H 1.09010 * 109.46853 * 299.99867 * 20 19 18 40 40 H 1.08999 * 109.47281 * 179.97438 * 20 19 18 41 41 H 0.96996 * 120.00181 * 359.97438 * 24 23 21 42 42 H 0.96999 * 120.00137 * 179.97438 * 24 23 21 43 43 H 1.08994 * 109.47651 * 299.99897 * 26 21 20 44 44 H 1.09007 * 109.47211 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9737 1.3435 1.1474 5 6 4.3746 0.9474 0.9846 6 6 4.4892 -0.5512 1.0961 7 1 3.6066 -1.1487 1.2703 8 6 5.7215 -1.1589 0.9808 9 7 6.7961 -0.4312 0.7682 10 14 5.8645 -3.0157 1.1267 11 1 4.5193 -3.5986 1.3630 12 1 6.4294 -3.5688 -0.1303 13 1 6.7584 -3.3555 2.2627 14 6 2.5220 1.7433 2.3525 15 8 1.3442 1.9865 2.5086 16 6 3.4806 1.8881 3.5063 17 1 4.0380 0.9602 3.6342 18 6 4.4545 3.0327 3.2197 19 6 5.4273 3.1802 4.3913 20 6 4.6438 3.4853 5.6695 21 6 3.6698 2.3407 5.9562 22 1 3.1113 2.5583 6.8666 23 6 4.4406 1.0579 6.1336 24 7 5.3613 0.9548 7.1125 25 8 4.2323 0.1183 5.3957 26 6 2.6970 2.1933 4.7846 27 1 -0.5400 0.9316 -0.0832 28 1 -0.5400 -0.9316 0.0831 29 1 1.8500 -0.9353 0.0004 30 1 1.3573 2.1324 0.0685 31 1 2.6378 1.3930 -0.9223 32 1 4.9776 1.4166 1.7620 33 1 4.7313 1.2672 0.0056 34 1 7.6631 -0.8587 0.6875 35 1 5.0125 2.8155 2.3088 36 1 3.8971 3.9606 3.0917 37 1 6.1214 3.9953 4.1869 38 1 5.9848 2.2523 4.5196 39 1 4.0862 4.4132 5.5412 40 1 5.3368 3.5899 6.5043 41 1 5.5281 1.7064 7.7025 42 1 5.8571 0.1291 7.2269 43 1 2.1396 3.1210 4.6562 44 1 2.0034 1.3775 4.9887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359382767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:13 Heat of formation + Delta-G solvation = -90.844264 kcal Electronic energy + Delta-G solvation = -25523.116422 eV Core-core repulsion = 22053.283769 eV Total energy + Delta-G solvation = -3469.832653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77834 -40.40688 -37.79410 -37.03486 -35.15085 -34.68857 -33.94397 -31.88407 -31.67538 -29.32191 -27.28147 -25.23142 -24.64106 -23.74806 -22.40323 -20.97068 -20.25536 -19.92821 -18.62468 -18.18007 -17.62079 -17.40129 -17.11308 -16.49964 -16.18333 -16.05521 -15.66152 -15.32410 -14.95725 -14.67264 -14.53394 -14.10569 -14.01536 -13.72416 -13.52130 -13.20101 -13.14936 -12.98320 -12.90571 -12.67958 -12.53312 -12.30873 -12.06829 -11.83630 -11.78640 -11.60541 -11.39540 -11.02477 -10.70388 -10.58930 -10.52203 -10.39936 -10.10483 -9.45228 -8.20400 -6.30417 1.29571 1.32490 1.35322 1.46192 1.78827 1.86937 2.36353 2.56505 2.73410 3.09831 3.61877 3.81257 3.88078 4.02137 4.10162 4.20185 4.27323 4.34991 4.40395 4.51302 4.52277 4.61411 4.69291 4.72608 4.84815 4.93031 5.03740 5.07301 5.10055 5.13452 5.21502 5.33371 5.34911 5.45166 5.57194 5.65944 5.73723 5.80535 5.92553 6.03834 6.10280 6.61291 6.62107 6.84182 7.33549 7.45218 7.54218 8.85411 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.007432 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.913141 B = 3766.592546 C = 5157.881622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.177 4.177 3 C 0.147 3.853 4 N -0.597 5.597 5 C 0.241 3.759 6 C -0.536 4.536 7 H 0.042 0.958 8 C 0.024 3.976 9 N -0.915 5.915 10 Si 0.947 3.053 11 H -0.280 1.280 12 H -0.271 1.271 13 H -0.280 1.280 14 C 0.514 3.486 15 O -0.592 6.592 16 C -0.112 4.112 17 H 0.096 0.904 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.100 4.100 21 C -0.101 4.101 22 H 0.136 0.864 23 C 0.508 3.492 24 N -0.838 5.838 25 O -0.586 6.586 26 C -0.072 4.072 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.418 0.582 42 H 0.401 0.599 43 H 0.083 0.917 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 9.990 11.819 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.327 5.327 5 C 0.121 3.879 6 C -0.575 4.575 7 H 0.060 0.940 8 C -0.176 4.176 9 N -0.555 5.555 10 Si 0.773 3.227 11 H -0.205 1.205 12 H -0.196 1.196 13 H -0.206 1.206 14 C 0.304 3.696 15 O -0.475 6.475 16 C -0.132 4.132 17 H 0.114 0.886 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.122 4.122 22 H 0.154 0.846 23 C 0.294 3.706 24 N -0.402 5.402 25 O -0.465 6.465 26 C -0.110 4.110 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.250 0.750 42 H 0.232 0.768 43 H 0.101 0.899 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.502 9.637 11.295 15.056 hybrid contribution 0.591 -1.759 -0.153 1.862 sum -1.910 7.878 11.141 13.778 Atomic orbital electron populations 1.23867 0.95023 1.02455 0.99513 1.23302 0.96744 0.98763 1.00834 1.20442 0.92612 0.95326 0.89184 1.48212 1.12250 1.63439 1.08749 1.19431 0.76711 0.94315 0.97453 1.21673 0.93151 0.93357 1.49295 0.93971 1.25506 0.95393 1.01964 0.94721 1.69985 0.98946 1.36626 1.49977 0.85678 0.77759 0.81316 0.77952 1.20504 1.19616 1.20552 1.21119 0.88796 0.75225 0.84424 1.90516 1.18605 1.54307 1.84069 1.21465 0.96629 1.02384 0.92766 0.88587 1.21669 0.96869 0.96690 0.99786 1.21542 0.97557 1.01600 0.94756 1.21604 0.97461 0.96958 0.97700 1.21450 0.97190 0.92781 1.00819 0.84622 1.21186 0.80086 0.89906 0.79390 1.43703 1.41368 1.20461 1.34691 1.90795 1.67689 1.42462 1.45565 1.21059 0.96318 1.01690 0.91959 0.87626 0.87506 0.89190 0.90364 0.89684 0.92812 0.96491 0.92486 0.92457 0.90748 0.89311 0.94276 0.88427 0.87917 0.75025 0.76816 0.89857 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 14.31 67.78 0.97 -4.91 16 2 C -0.18 -7.21 9.76 25.65 0.25 -6.96 16 3 C 0.15 6.03 5.79 85.63 0.50 6.52 16 4 N -0.60 -27.76 2.46 -830.51 -2.04 -29.80 16 5 C 0.24 12.44 4.63 85.64 0.40 12.83 16 6 C -0.54 -30.66 9.37 25.60 0.24 -30.42 16 7 H 0.04 2.53 6.94 -2.91 -0.02 2.51 16 8 C 0.02 1.37 5.46 84.66 0.46 1.83 16 9 N -0.92 -52.75 13.29 21.45 0.28 -52.47 16 10 Si 0.95 45.94 29.54 68.60 2.03 47.97 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 C 0.51 23.58 6.92 87.66 0.61 24.19 16 15 O -0.59 -28.41 15.70 -3.02 -0.05 -28.46 16 16 C -0.11 -4.49 1.39 -11.54 -0.02 -4.50 16 17 H 0.10 4.73 5.05 -2.39 -0.01 4.72 16 18 C -0.11 -3.77 4.81 30.59 0.15 -3.63 16 19 C -0.12 -3.01 5.70 30.59 0.17 -2.84 16 20 C -0.10 -1.72 5.36 30.59 0.16 -1.55 16 21 C -0.10 -2.30 3.01 -11.54 -0.03 -2.33 16 22 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 23 C 0.51 14.63 5.91 87.66 0.52 15.15 16 24 N -0.84 -15.27 8.77 -173.53 -1.52 -16.79 16 25 O -0.59 -25.10 14.49 -3.03 -0.04 -25.14 16 26 C -0.07 -2.36 3.69 30.60 0.11 -2.25 16 27 H 0.11 3.31 7.85 -2.91 -0.02 3.29 16 28 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.09 4.07 7.23 -2.91 -0.02 4.05 16 30 H 0.08 3.01 7.32 -2.39 -0.02 2.99 16 31 H 0.08 3.28 7.90 -2.39 -0.02 3.26 16 32 H 0.05 2.82 3.98 -2.39 -0.01 2.81 16 33 H 0.02 0.91 7.96 -2.39 -0.02 0.89 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.06 2.24 5.37 -2.39 -0.01 2.23 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.22 7.22 -2.39 -0.02 1.21 16 39 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.10 1.03 7.56 -2.39 -0.02 1.01 16 41 H 0.42 3.81 8.25 -92.71 -0.76 3.05 16 42 H 0.40 7.39 8.93 -92.71 -0.83 6.56 16 43 H 0.08 2.49 8.03 -2.39 -0.02 2.48 16 44 H 0.04 1.53 8.10 -2.38 -0.02 1.51 16 Total: -1.00 -76.74 348.30 2.57 -74.17 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.57 Total: 29.38 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.49 Total: 1.14 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.28 Total: -99.05 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.09 Total: -53.60 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.74 2.57 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.674 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds