Wall clock time and date at job start Tue Mar 31 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00238 * 2 1 4 4 N 1.46493 * 109.46969 * 125.48272 * 3 2 1 5 5 C 1.46503 * 120.00164 * 269.40006 * 4 3 2 6 6 C 1.50694 * 109.47558 * 274.05126 * 5 4 3 7 7 H 1.07998 * 119.99797 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99951 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00022 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99903 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47382 * 60.00133 * 10 8 6 12 12 H 1.48508 * 109.47303 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47342 * 300.00360 * 10 8 6 14 14 C 1.34781 * 120.00334 * 89.41138 * 4 3 2 15 15 O 1.21284 * 119.99683 * 5.25354 * 14 4 3 16 16 C 1.50694 * 120.00259 * 185.25513 * 14 4 3 17 17 H 1.09004 * 109.46983 * 34.42355 * 16 14 4 18 18 C 1.52998 * 109.47415 * 274.42506 * 16 14 4 19 19 C 1.52992 * 109.47179 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47557 * 60.00196 * 19 18 16 21 21 C 1.53004 * 109.46634 * 299.99784 * 20 19 18 22 22 H 1.09000 * 109.46770 * 179.97438 * 21 20 19 23 23 C 1.50695 * 109.47122 * 299.99662 * 21 20 19 24 24 N 1.34773 * 120.00628 * 300.00338 * 23 21 20 25 25 O 1.21285 * 119.99707 * 119.99879 * 23 21 20 26 26 C 1.53003 * 109.47279 * 60.00060 * 21 20 19 27 27 H 1.08003 * 119.99964 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00010 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.46712 * 5.48142 * 3 2 1 31 31 H 1.09004 * 109.46832 * 245.48092 * 3 2 1 32 32 H 1.09004 * 109.46546 * 34.05210 * 5 4 3 33 33 H 1.08999 * 109.46754 * 154.04690 * 5 4 3 34 34 H 0.97000 * 119.99327 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47192 * 59.99537 * 18 16 14 36 36 H 1.09004 * 109.46643 * 300.00359 * 18 16 14 37 37 H 1.08995 * 109.47497 * 299.99474 * 19 18 16 38 38 H 1.09003 * 109.46956 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.47307 * 59.99162 * 20 19 18 40 40 H 1.09000 * 109.47620 * 179.97438 * 20 19 18 41 41 H 0.97003 * 119.99570 * 359.97438 * 24 23 21 42 42 H 0.96996 * 120.00535 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.46828 * 179.97438 * 26 21 20 44 44 H 1.09004 * 109.46987 * 59.99878 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0020 1.3271 1.1247 5 6 2.5807 1.8668 2.4199 6 6 2.7864 3.3595 2.4331 7 1 3.1901 3.8567 1.5635 8 6 2.4581 4.0908 3.5549 9 7 1.9659 3.4854 4.6137 10 14 2.7124 5.9413 3.5710 11 1 1.9052 6.5614 2.4898 12 1 2.2854 6.4883 4.8840 13 1 4.1495 6.2454 3.3523 14 6 4.2531 0.8510 0.9679 15 8 4.6328 0.4928 -0.1269 16 6 5.1802 0.7637 2.1527 17 1 4.6052 0.5225 3.0469 18 6 5.8866 2.1068 2.3477 19 6 6.8282 2.0180 3.5502 20 6 7.8699 0.9251 3.3027 21 6 7.1635 -0.4180 3.1079 22 1 7.9056 -1.1965 2.9311 23 6 6.3693 -0.7519 4.3442 24 7 6.9934 -0.8816 5.5317 25 8 5.1682 -0.9038 4.2708 26 6 6.2218 -0.3293 1.9052 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3593 2.1312 0.0982 31 1 2.6146 1.4065 -0.9350 32 1 1.5258 1.6439 2.5805 33 1 3.1732 1.4113 3.2133 34 1 1.7354 3.9999 5.4030 35 1 5.1444 2.8855 2.5235 36 1 6.4614 2.3481 1.4535 37 1 6.2538 1.7765 4.4445 38 1 7.3318 2.9747 3.6888 39 1 8.4444 1.1665 2.4084 40 1 8.5411 0.8621 4.1593 41 1 7.9541 -0.7604 5.5904 42 1 6.4821 -1.0961 6.3275 43 1 5.7189 -1.2863 1.7662 44 1 6.7964 -0.0878 1.0109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359382768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:17 Heat of formation + Delta-G solvation = -74.314047 kcal Electronic energy + Delta-G solvation = -25432.516579 eV Core-core repulsion = 21963.400730 eV Total energy + Delta-G solvation = -3469.115849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43139 -38.85506 -36.48936 -35.27121 -33.72675 -33.32160 -32.06507 -30.60450 -30.42780 -27.39468 -25.68928 -23.63749 -23.07733 -22.27372 -21.16471 -19.65711 -19.10443 -18.12910 -17.05832 -16.54716 -16.12814 -16.04118 -15.68276 -15.08109 -14.49864 -14.44388 -14.34902 -13.75860 -13.72219 -13.40668 -12.91030 -12.57026 -12.34022 -12.14728 -11.87252 -11.80151 -11.59021 -11.41908 -11.22294 -11.01478 -10.84283 -10.80368 -10.54824 -10.51991 -10.17955 -10.08005 -9.74342 -9.64263 -9.53073 -9.23808 -9.05162 -8.65982 -8.40201 -7.59479 -6.10440 -4.16876 2.67591 2.85738 3.26062 3.31290 3.33507 3.58415 3.67198 4.17384 4.38894 4.84204 4.91146 4.98041 5.21142 5.27999 5.42664 5.55788 5.61527 5.64569 5.69340 5.70872 5.85304 5.88555 6.04121 6.12477 6.24272 6.30829 6.37228 6.42329 6.45892 6.57509 6.62910 6.81910 6.89910 7.02784 7.05083 7.09443 7.18436 7.41087 7.45562 7.69565 7.84184 8.15715 8.47122 8.49817 8.88175 9.17984 9.48792 10.95771 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.007262 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.781850 B = 3854.991239 C = 5299.576846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C 0.142 3.858 4 N -0.591 5.591 5 C 0.236 3.764 6 C -0.533 4.533 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.887 5.887 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.524 3.476 15 O -0.582 6.582 16 C -0.111 4.111 17 H 0.124 0.876 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.107 4.107 22 H 0.094 0.906 23 C 0.519 3.481 24 N -0.860 5.860 25 O -0.524 6.524 26 C -0.080 4.080 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.397 0.603 42 H 0.398 0.602 43 H 0.064 0.936 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.360 -6.508 0.424 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.019 3.981 4 N -0.320 5.320 5 C 0.117 3.883 6 C -0.572 4.572 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.313 3.687 15 O -0.464 6.464 16 C -0.131 4.131 17 H 0.141 0.859 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.129 4.129 22 H 0.112 0.888 23 C 0.304 3.696 24 N -0.424 5.424 25 O -0.399 6.399 26 C -0.118 4.118 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.225 0.775 42 H 0.229 0.771 43 H 0.083 0.917 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.681 -6.697 -0.179 11.773 hybrid contribution 0.276 0.998 0.671 1.234 sum 9.956 -5.699 0.493 11.483 Atomic orbital electron populations 1.23737 0.95771 1.01435 1.02360 1.23406 0.96081 0.99383 0.98293 1.20384 0.92189 0.94577 0.90979 1.48198 1.10824 1.59244 1.13736 1.19484 0.96549 0.93559 0.78752 1.21419 1.43425 0.92247 1.00108 0.92176 1.24921 0.94925 0.98468 0.95369 1.69940 1.42596 1.35955 1.03990 0.86659 0.78780 0.85404 0.77230 1.20192 1.21228 1.20066 1.20568 0.82376 0.76065 0.89709 1.90542 1.76327 1.51936 1.27585 1.21475 0.96143 0.96183 0.99309 0.85865 1.21610 0.99150 0.97561 0.97081 1.21528 0.96737 0.97906 0.99350 1.21577 0.97683 0.93470 1.01985 1.21396 0.98413 0.99198 0.93873 0.88787 1.20703 0.88315 0.75424 0.85123 1.43908 1.12248 1.75710 1.10567 1.90744 1.14696 1.48721 1.85782 1.21172 0.96032 0.99174 0.95463 0.89009 0.88493 0.87972 0.89991 0.90275 0.95081 0.93480 0.92593 0.87903 0.92744 0.91756 0.91733 0.90760 0.92051 0.77522 0.77113 0.91699 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 14.32 29.02 0.42 -2.69 16 2 C -0.15 -2.77 9.84 -36.02 -0.35 -3.13 16 3 C 0.14 2.87 5.90 -5.20 -0.03 2.84 16 4 N -0.59 -13.40 2.44 -176.44 -0.43 -13.83 16 5 C 0.24 5.94 4.90 -5.19 -0.03 5.92 16 6 C -0.53 -14.02 7.39 -34.44 -0.25 -14.27 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 10 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.52 11.71 6.77 -10.99 -0.07 11.64 16 15 O -0.58 -13.74 15.66 5.55 0.09 -13.66 16 16 C -0.11 -2.19 1.46 -91.77 -0.13 -2.32 16 17 H 0.12 2.75 3.55 -51.93 -0.18 2.57 16 18 C -0.12 -2.17 5.14 -26.74 -0.14 -2.31 16 19 C -0.12 -1.78 5.70 -26.74 -0.15 -1.93 16 20 C -0.11 -1.25 5.36 -26.73 -0.14 -1.39 16 21 C -0.11 -1.36 3.01 -91.77 -0.28 -1.64 16 22 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 23 C 0.52 7.46 5.91 -10.99 -0.06 7.39 16 24 N -0.86 -8.44 8.77 31.22 0.27 -8.17 16 25 O -0.52 -10.21 14.50 5.55 0.08 -10.13 16 26 C -0.08 -1.33 3.91 -26.73 -0.10 -1.43 16 27 H 0.09 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.10 1.49 7.84 -52.49 -0.41 1.07 16 29 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 31 H 0.08 1.59 7.37 -51.93 -0.38 1.21 16 32 H 0.03 0.84 8.10 -51.93 -0.42 0.41 16 33 H 0.05 1.26 5.67 -51.93 -0.29 0.97 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.10 2.26 5.76 -51.93 -0.30 1.96 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.08 7.22 -51.93 -0.37 0.71 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.53 7.57 -51.93 -0.39 0.13 16 41 H 0.40 2.52 8.25 -40.82 -0.34 2.19 16 42 H 0.40 3.70 8.93 -40.82 -0.36 3.33 16 43 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 44 H 0.08 1.23 7.87 -51.93 -0.41 0.82 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -32.07 349.32 -7.22 -39.28 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.77 Total: 11.40 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.43 Total: -1.66 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.58 Total: -46.13 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.07 -7.22 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.030 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds