Wall clock time and date at job start Tue Mar 31 2020 06:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00238 * 2 1 4 4 N 1.46493 * 109.46969 * 125.48272 * 3 2 1 5 5 C 1.46503 * 120.00164 * 269.40006 * 4 3 2 6 6 C 1.50694 * 109.47558 * 274.05126 * 5 4 3 7 7 H 1.07998 * 119.99797 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99951 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00022 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99903 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47382 * 60.00133 * 10 8 6 12 12 H 1.48508 * 109.47303 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47342 * 300.00360 * 10 8 6 14 14 C 1.34781 * 120.00334 * 89.41138 * 4 3 2 15 15 O 1.21284 * 119.99683 * 5.25354 * 14 4 3 16 16 C 1.50694 * 120.00259 * 185.25513 * 14 4 3 17 17 H 1.09004 * 109.46983 * 34.42355 * 16 14 4 18 18 C 1.52998 * 109.47415 * 274.42506 * 16 14 4 19 19 C 1.52992 * 109.47179 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47557 * 60.00196 * 19 18 16 21 21 C 1.53004 * 109.46634 * 299.99784 * 20 19 18 22 22 H 1.09000 * 109.46770 * 179.97438 * 21 20 19 23 23 C 1.50695 * 109.47122 * 299.99662 * 21 20 19 24 24 N 1.34773 * 120.00628 * 300.00338 * 23 21 20 25 25 O 1.21285 * 119.99707 * 119.99879 * 23 21 20 26 26 C 1.53003 * 109.47279 * 60.00060 * 21 20 19 27 27 H 1.08003 * 119.99964 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00010 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.46712 * 5.48142 * 3 2 1 31 31 H 1.09004 * 109.46832 * 245.48092 * 3 2 1 32 32 H 1.09004 * 109.46546 * 34.05210 * 5 4 3 33 33 H 1.08999 * 109.46754 * 154.04690 * 5 4 3 34 34 H 0.97000 * 119.99327 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47192 * 59.99537 * 18 16 14 36 36 H 1.09004 * 109.46643 * 300.00359 * 18 16 14 37 37 H 1.08995 * 109.47497 * 299.99474 * 19 18 16 38 38 H 1.09003 * 109.46956 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.47307 * 59.99162 * 20 19 18 40 40 H 1.09000 * 109.47620 * 179.97438 * 20 19 18 41 41 H 0.97003 * 119.99570 * 359.97438 * 24 23 21 42 42 H 0.96996 * 120.00535 * 179.97438 * 24 23 21 43 43 H 1.08998 * 109.46828 * 179.97438 * 26 21 20 44 44 H 1.09004 * 109.46987 * 59.99878 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0020 1.3271 1.1247 5 6 2.5807 1.8668 2.4199 6 6 2.7864 3.3595 2.4331 7 1 3.1901 3.8567 1.5635 8 6 2.4581 4.0908 3.5549 9 7 1.9659 3.4854 4.6137 10 14 2.7124 5.9413 3.5710 11 1 1.9052 6.5614 2.4898 12 1 2.2854 6.4883 4.8840 13 1 4.1495 6.2454 3.3523 14 6 4.2531 0.8510 0.9679 15 8 4.6328 0.4928 -0.1269 16 6 5.1802 0.7637 2.1527 17 1 4.6052 0.5225 3.0469 18 6 5.8866 2.1068 2.3477 19 6 6.8282 2.0180 3.5502 20 6 7.8699 0.9251 3.3027 21 6 7.1635 -0.4180 3.1079 22 1 7.9056 -1.1965 2.9311 23 6 6.3693 -0.7519 4.3442 24 7 6.9934 -0.8816 5.5317 25 8 5.1682 -0.9038 4.2708 26 6 6.2218 -0.3293 1.9052 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3593 2.1312 0.0982 31 1 2.6146 1.4065 -0.9350 32 1 1.5258 1.6439 2.5805 33 1 3.1732 1.4113 3.2133 34 1 1.7354 3.9999 5.4030 35 1 5.1444 2.8855 2.5235 36 1 6.4614 2.3481 1.4535 37 1 6.2538 1.7765 4.4445 38 1 7.3318 2.9747 3.6888 39 1 8.4444 1.1665 2.4084 40 1 8.5411 0.8621 4.1593 41 1 7.9541 -0.7604 5.5904 42 1 6.4821 -1.0961 6.3275 43 1 5.7189 -1.2863 1.7662 44 1 6.7964 -0.0878 1.0109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359382768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:16 Heat of formation + Delta-G solvation = -96.596138 kcal Electronic energy + Delta-G solvation = -25433.482803 eV Core-core repulsion = 21963.400730 eV Total energy + Delta-G solvation = -3470.082073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76574 -40.41924 -37.80753 -37.04099 -35.21764 -34.69579 -33.89696 -31.85667 -31.72175 -29.38059 -27.31193 -24.99749 -24.80027 -23.77379 -22.43340 -21.08015 -20.26499 -19.84013 -18.52129 -18.19221 -17.63910 -17.46909 -17.15993 -16.48356 -16.29929 -16.12144 -15.60544 -15.18768 -15.01057 -14.70443 -14.43499 -14.26606 -14.07196 -13.63504 -13.39299 -13.18938 -12.99252 -12.95364 -12.91024 -12.73540 -12.61287 -12.29506 -12.22900 -11.87444 -11.79403 -11.64231 -11.49679 -11.02135 -10.66954 -10.62971 -10.54791 -10.41841 -10.15806 -9.47029 -8.17963 -6.32257 1.24954 1.40979 1.41884 1.49991 1.76717 1.81440 2.36672 2.54347 2.72574 3.10842 3.59929 3.83851 3.88061 3.98507 4.07859 4.17392 4.27199 4.28735 4.44204 4.52419 4.54371 4.60180 4.67330 4.76014 4.88829 4.92556 4.98312 5.05160 5.08526 5.17916 5.20898 5.30388 5.34900 5.55000 5.56574 5.62367 5.63044 5.73517 5.92202 6.03395 6.06688 6.58346 6.60398 6.82001 7.31135 7.42527 7.51780 8.87934 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.007262 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.781850 B = 3854.991239 C = 5299.576846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.182 4.182 3 C 0.140 3.860 4 N -0.598 5.598 5 C 0.259 3.741 6 C -0.536 4.536 7 H 0.054 0.946 8 C 0.023 3.977 9 N -0.919 5.919 10 Si 0.955 3.045 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.514 3.486 15 O -0.598 6.598 16 C -0.107 4.107 17 H 0.097 0.903 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.101 4.101 21 C -0.101 4.101 22 H 0.139 0.861 23 C 0.513 3.487 24 N -0.837 5.837 25 O -0.588 6.588 26 C -0.076 4.076 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.007 0.993 33 H 0.025 0.975 34 H 0.267 0.733 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.418 0.582 42 H 0.403 0.597 43 H 0.045 0.955 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -6.197 0.745 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.201 4.201 3 C 0.018 3.982 4 N -0.327 5.327 5 C 0.138 3.862 6 C -0.575 4.575 7 H 0.072 0.928 8 C -0.178 4.178 9 N -0.558 5.558 10 Si 0.780 3.220 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.305 3.695 15 O -0.481 6.481 16 C -0.128 4.128 17 H 0.115 0.885 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.138 4.138 21 C -0.122 4.122 22 H 0.156 0.844 23 C 0.299 3.701 24 N -0.401 5.401 25 O -0.468 6.468 26 C -0.115 4.115 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.250 0.750 42 H 0.234 0.766 43 H 0.064 0.936 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.910 -6.391 0.156 13.517 hybrid contribution -0.475 0.858 0.561 1.129 sum 11.435 -5.534 0.717 12.724 Atomic orbital electron populations 1.24014 0.94858 1.03108 0.98326 1.23206 0.96909 0.97968 1.01992 1.20470 0.91944 0.95906 0.89912 1.48245 1.11670 1.59265 1.13471 1.19015 0.94463 0.93217 0.79468 1.21489 1.43300 0.92643 1.00035 0.92811 1.25663 0.94422 1.02884 0.94796 1.70058 1.43454 1.37708 1.04586 0.85655 0.79081 0.79901 0.77380 1.19722 1.20662 1.19132 1.21161 0.82521 0.75416 0.90452 1.90508 1.76547 1.52682 1.28366 1.21458 0.96422 0.98134 0.96788 0.88503 1.21534 0.98925 0.95463 0.99185 1.21511 0.96852 1.00503 0.96387 1.21604 0.96763 0.90657 1.04775 1.21430 0.98002 1.01583 0.91144 0.84383 1.21083 0.87663 0.74723 0.86671 1.43693 1.13409 1.73620 1.09354 1.90736 1.17441 1.51813 1.86763 1.21129 0.95783 0.96756 0.97801 0.86259 0.87711 0.88661 0.90153 0.90643 0.97458 0.95696 0.92427 0.91898 0.92070 0.94034 0.90121 0.88855 0.87793 0.75024 0.76640 0.93568 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 14.32 67.78 0.97 -4.16 16 2 C -0.18 -6.77 9.84 25.65 0.25 -6.51 16 3 C 0.14 5.90 5.90 85.64 0.51 6.41 16 4 N -0.60 -28.59 2.44 -830.50 -2.03 -30.62 16 5 C 0.26 13.80 4.90 85.63 0.42 14.22 16 6 C -0.54 -29.21 7.39 25.60 0.19 -29.02 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 8 C 0.02 1.23 5.46 84.65 0.46 1.70 16 9 N -0.92 -52.89 13.29 21.45 0.28 -52.61 16 10 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 14 C 0.51 24.08 6.77 87.65 0.59 24.68 16 15 O -0.60 -29.13 15.66 -3.04 -0.05 -29.17 16 16 C -0.11 -4.42 1.46 -11.54 -0.02 -4.43 16 17 H 0.10 4.62 3.55 -2.39 -0.01 4.62 16 18 C -0.11 -4.29 5.14 30.59 0.16 -4.13 16 19 C -0.11 -3.32 5.70 30.59 0.17 -3.15 16 20 C -0.10 -1.91 5.36 30.60 0.16 -1.75 16 21 C -0.10 -2.30 3.01 -11.54 -0.03 -2.33 16 22 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 23 C 0.51 14.21 5.91 87.66 0.52 14.73 16 24 N -0.84 -14.46 8.77 -173.54 -1.52 -15.98 16 25 O -0.59 -23.76 14.50 -3.05 -0.04 -23.80 16 26 C -0.08 -2.51 3.91 30.60 0.12 -2.39 16 27 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 28 H 0.10 3.09 7.84 -2.91 -0.02 3.07 16 29 H 0.10 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.08 3.32 7.72 -2.39 -0.02 3.31 16 31 H 0.08 3.17 7.37 -2.38 -0.02 3.15 16 32 H 0.01 0.42 8.10 -2.39 -0.02 0.40 16 33 H 0.03 1.45 5.67 -2.39 -0.01 1.44 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.06 2.87 5.76 -2.39 -0.01 2.86 16 36 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.04 1.38 7.22 -2.39 -0.02 1.37 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.18 7.57 -2.39 -0.02 1.16 16 41 H 0.42 3.62 8.25 -92.71 -0.76 2.85 16 42 H 0.40 6.84 8.93 -92.71 -0.83 6.01 16 43 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 44 H 0.08 2.55 7.87 -2.39 -0.02 2.53 16 Total: -1.00 -74.29 349.32 2.57 -71.72 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.58 Total: 32.00 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.47 Total: 3.85 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.26 Total: -99.21 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.09 Total: -52.98 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.29 2.57 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.876 kcal (2) G-P(sol) polarization free energy of solvation -74.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds