Wall clock time and date at job start Tue Mar 31 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46939 * 2 1 4 4 N 1.46497 * 109.46772 * 179.97438 * 3 2 1 5 5 C 1.46758 * 124.35329 * 269.99821 * 4 3 2 6 6 C 1.54482 * 105.47435 * 163.01001 * 5 4 3 7 7 H 1.09001 * 110.96668 * 267.25859 * 6 5 4 8 8 C 1.50701 * 110.96745 * 143.53760 * 6 5 4 9 9 O 1.21278 * 120.00472 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99649 * 180.02562 * 8 6 5 11 11 C 1.46502 * 119.99833 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47141 * 178.27600 * 11 10 8 13 13 C 1.50696 * 115.54815 * 65.13962 * 12 11 10 14 14 H 1.08002 * 120.00090 * 265.39968 * 13 12 11 15 15 C 1.37877 * 119.99919 * 85.40889 * 13 12 11 16 16 N 1.31516 * 120.00007 * 353.55632 * 15 13 12 17 17 Si 1.86803 * 119.99950 * 173.55455 * 15 13 12 18 18 H 1.48500 * 109.46987 * 59.99736 * 17 15 13 19 19 H 1.48502 * 109.47162 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46962 * 299.99649 * 17 15 13 21 21 C 1.53001 * 117.49624 * 279.47452 * 12 11 10 22 22 C 1.52995 * 117.49811 * 210.81263 * 12 11 10 23 23 C 1.54471 * 101.83567 * 25.22339 * 6 5 4 24 24 C 1.34423 * 124.34592 * 90.02745 * 4 3 2 25 25 O 1.21277 * 124.94395 * 0.34798 * 24 4 3 26 26 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47395 * 299.99840 * 1 2 3 28 28 H 1.08995 * 109.47471 * 59.99921 * 1 2 3 29 29 H 1.09000 * 109.47395 * 240.00160 * 2 1 3 30 30 H 1.09003 * 109.47387 * 119.99453 * 2 1 3 31 31 H 1.09000 * 109.46946 * 59.99885 * 3 2 1 32 32 H 1.08994 * 109.46666 * 300.00005 * 3 2 1 33 33 H 1.09004 * 110.24907 * 282.01329 * 5 4 3 34 34 H 1.09004 * 110.24709 * 43.92501 * 5 4 3 35 35 H 0.97001 * 120.00235 * 359.97438 * 10 8 6 36 36 H 1.08996 * 109.47480 * 298.27357 * 11 10 8 37 37 H 1.09005 * 109.47007 * 58.28013 * 11 10 8 38 38 H 0.97001 * 119.99843 * 185.06983 * 16 15 13 39 39 H 1.08998 * 117.50124 * 359.97438 * 21 12 11 40 40 H 1.09003 * 117.50208 * 145.02598 * 21 12 11 41 41 H 1.09003 * 117.50154 * 214.97866 * 22 12 11 42 42 H 1.09004 * 117.49955 * 359.97438 * 22 12 11 43 43 H 1.09001 * 110.54651 * 216.75575 * 23 6 5 44 44 H 1.09004 * 110.35896 * 94.16121 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3326 1.4428 1.2126 6 6 5.7408 1.0076 0.7500 7 1 5.8672 -0.0707 0.8467 8 6 6.8109 1.7439 1.5142 9 8 6.5020 2.5540 2.3622 10 7 8.1112 1.5028 1.2545 11 6 9.1515 2.2190 1.9969 12 6 10.5291 1.7322 1.5426 13 6 10.8867 2.0377 0.1110 14 1 10.7067 1.3023 -0.6593 15 6 11.4439 3.2558 -0.2155 16 7 11.5468 4.1976 0.6967 17 14 12.0528 3.5686 -1.9536 18 1 10.9238 3.4233 -2.9073 19 1 12.6046 4.9443 -2.0448 20 1 13.1148 2.5866 -2.2903 21 6 11.0451 0.4193 2.1351 22 6 11.6600 1.7510 2.5729 23 6 5.7300 1.4276 -0.7364 24 6 4.2638 1.4429 -1.1089 25 8 3.8354 1.4493 -2.2435 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 4.3696 2.4431 1.6440 34 1 3.9370 0.7335 1.9396 35 1 8.3583 0.8552 0.5759 36 1 9.0630 3.2885 1.8062 37 1 9.0326 2.0290 3.0637 38 1 11.8703 5.0782 0.4503 39 1 10.4034 -0.0974 2.8487 40 1 11.6438 -0.2233 1.4894 41 1 12.6630 1.9840 2.2151 42 1 11.4228 2.1106 3.5742 43 1 6.2702 0.7010 -1.3433 44 1 6.1635 2.4209 -0.8530 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412312064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:59 Heat of formation + Delta-G solvation = -60.856569 kcal Electronic energy + Delta-G solvation = -23809.689177 eV Core-core repulsion = 20341.156888 eV Total energy + Delta-G solvation = -3468.532289 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77031 -38.96007 -36.86050 -36.32959 -34.88082 -33.45294 -32.03203 -31.57028 -27.80146 -27.02884 -26.03832 -25.21025 -22.78211 -21.98942 -21.23990 -19.76985 -19.51970 -19.22917 -17.32231 -17.00522 -16.27907 -15.84438 -15.40591 -14.93098 -14.82522 -14.72428 -14.53572 -13.84286 -13.80369 -13.74678 -13.59964 -12.95026 -12.78439 -12.62610 -12.36356 -12.08592 -11.87796 -11.70354 -11.61896 -11.44065 -11.31288 -11.03899 -10.97680 -10.96316 -10.58523 -10.33146 -9.98494 -9.70916 -9.39796 -9.04340 -8.79867 -8.55240 -8.38451 -8.17362 -6.12997 -4.22379 2.53486 2.83788 2.97744 3.24809 3.31061 3.32675 3.64183 4.23819 4.31560 4.38219 4.69781 4.70996 4.84203 4.88918 4.99602 5.14874 5.17160 5.21745 5.35204 5.37809 5.42227 5.48398 5.60153 5.72729 5.75168 5.83459 5.88987 5.96313 5.97085 6.26610 6.39232 6.43016 6.48168 6.63007 6.79316 7.00109 7.03385 7.15323 7.35889 7.41682 7.76213 8.10230 8.14433 8.27563 8.69391 8.78986 9.45312 10.94639 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003555 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.665373 B = 7873.298245 C = 8701.685001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.126 3.874 4 N -0.621 5.621 5 C 0.118 3.882 6 C -0.123 4.123 7 H 0.113 0.887 8 C 0.515 3.485 9 O -0.552 6.552 10 N -0.696 5.696 11 C 0.162 3.838 12 C 0.028 3.972 13 C -0.504 4.504 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.211 4.211 22 C -0.148 4.148 23 C -0.145 4.145 24 C 0.522 3.478 25 O -0.534 6.534 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.263 0.737 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 -8.050 1.453 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.355 5.355 5 C -0.005 4.005 6 C -0.145 4.145 7 H 0.131 0.869 8 C 0.299 3.701 9 O -0.431 6.431 10 N -0.344 5.344 11 C 0.039 3.961 12 C 0.027 3.973 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.129 4.129 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.248 4.248 22 C -0.186 4.186 23 C -0.185 4.185 24 C 0.309 3.691 25 O -0.410 6.410 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.721 -7.261 1.521 17.383 hybrid contribution 0.617 -0.049 -1.127 1.286 sum -15.104 -7.310 0.394 16.784 Atomic orbital electron populations 1.21690 0.95033 1.01994 1.01987 1.21920 0.96210 0.97187 1.02700 1.21430 0.77909 0.97033 1.03246 1.48347 1.06182 1.73519 1.07419 1.21988 0.87977 1.03894 0.86673 1.22190 0.94668 1.02239 0.95382 0.86885 1.19911 0.83683 0.82996 0.83487 1.90674 1.82245 1.35718 1.34487 1.45960 1.04941 1.43120 1.40355 1.21047 0.86035 0.96854 0.92135 1.19020 0.89729 0.94066 0.94478 1.20305 1.42057 1.00991 0.90782 0.92165 1.24980 0.94782 0.96235 0.96927 1.69960 1.45106 1.02946 1.32963 0.86703 0.79426 0.77366 0.84792 1.20104 1.21271 1.20176 1.23032 1.05702 0.91762 1.04292 1.22497 0.99483 0.98730 0.97893 1.22322 0.95032 1.06054 0.95117 1.20850 0.89074 0.74798 0.84329 1.90712 1.78658 1.50569 1.21095 0.92428 0.92536 0.92481 0.91538 0.91669 0.90259 0.90023 0.88847 0.90032 0.76385 0.90796 0.94301 0.92720 0.91639 0.90324 0.89801 0.91659 0.86988 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.14 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.13 1.20 5.93 -4.04 -0.02 1.18 16 4 N -0.62 -7.22 2.93 -172.41 -0.51 -7.72 16 5 C 0.12 1.30 6.71 -3.12 -0.02 1.28 16 6 C -0.12 -1.44 3.53 -90.22 -0.32 -1.76 16 7 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 8 C 0.52 8.31 7.06 -10.99 -0.08 8.23 16 9 O -0.55 -10.81 15.50 5.56 0.09 -10.73 16 10 N -0.70 -12.06 5.48 -60.29 -0.33 -12.39 16 11 C 0.16 3.43 5.50 -4.04 -0.02 3.41 16 12 C 0.03 0.62 1.38 -155.66 -0.21 0.40 16 13 C -0.50 -12.42 8.63 -34.44 -0.30 -12.72 16 14 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 15 C 0.08 1.94 5.39 -17.82 -0.10 1.84 16 16 N -0.87 -23.62 12.91 55.43 0.72 -22.90 16 17 Si 0.89 20.15 29.55 -169.99 -5.02 15.12 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.21 -4.14 9.96 -26.69 -0.27 -4.40 16 22 C -0.15 -3.24 9.42 -26.69 -0.25 -3.49 16 23 C -0.14 -1.81 6.41 -26.83 -0.17 -1.98 16 24 C 0.52 7.32 8.02 -10.86 -0.09 7.24 16 25 O -0.53 -9.31 17.59 5.56 0.10 -9.22 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 33 H 0.09 1.19 6.96 -51.93 -0.36 0.83 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.40 6.32 8.37 -40.82 -0.34 5.97 16 36 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -30.18 368.75 -8.46 -38.64 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.41 Total: 6.40 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.65 Total: -2.76 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.12 Total: -43.02 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.18 -8.46 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412312064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.218 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds