Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46939 * 2 1 4 4 N 1.46497 * 109.46772 * 179.97438 * 3 2 1 5 5 C 1.46758 * 124.35329 * 269.99821 * 4 3 2 6 6 C 1.54482 * 105.47435 * 163.01001 * 5 4 3 7 7 H 1.09001 * 110.96668 * 267.25859 * 6 5 4 8 8 C 1.50701 * 110.96745 * 143.53760 * 6 5 4 9 9 O 1.21278 * 120.00472 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99649 * 180.02562 * 8 6 5 11 11 C 1.46502 * 119.99833 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47141 * 178.27600 * 11 10 8 13 13 C 1.50696 * 115.54815 * 65.13962 * 12 11 10 14 14 H 1.08002 * 120.00090 * 265.39968 * 13 12 11 15 15 C 1.37877 * 119.99919 * 85.40889 * 13 12 11 16 16 N 1.31516 * 120.00007 * 353.55632 * 15 13 12 17 17 Si 1.86803 * 119.99950 * 173.55455 * 15 13 12 18 18 H 1.48500 * 109.46987 * 59.99736 * 17 15 13 19 19 H 1.48502 * 109.47162 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46962 * 299.99649 * 17 15 13 21 21 C 1.53001 * 117.49624 * 279.47452 * 12 11 10 22 22 C 1.52995 * 117.49811 * 210.81263 * 12 11 10 23 23 C 1.54471 * 101.83567 * 25.22339 * 6 5 4 24 24 C 1.34423 * 124.34592 * 90.02745 * 4 3 2 25 25 O 1.21277 * 124.94395 * 0.34798 * 24 4 3 26 26 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47395 * 299.99840 * 1 2 3 28 28 H 1.08995 * 109.47471 * 59.99921 * 1 2 3 29 29 H 1.09000 * 109.47395 * 240.00160 * 2 1 3 30 30 H 1.09003 * 109.47387 * 119.99453 * 2 1 3 31 31 H 1.09000 * 109.46946 * 59.99885 * 3 2 1 32 32 H 1.08994 * 109.46666 * 300.00005 * 3 2 1 33 33 H 1.09004 * 110.24907 * 282.01329 * 5 4 3 34 34 H 1.09004 * 110.24709 * 43.92501 * 5 4 3 35 35 H 0.97001 * 120.00235 * 359.97438 * 10 8 6 36 36 H 1.08996 * 109.47480 * 298.27357 * 11 10 8 37 37 H 1.09005 * 109.47007 * 58.28013 * 11 10 8 38 38 H 0.97001 * 119.99843 * 185.06983 * 16 15 13 39 39 H 1.08998 * 117.50124 * 359.97438 * 21 12 11 40 40 H 1.09003 * 117.50208 * 145.02598 * 21 12 11 41 41 H 1.09003 * 117.50154 * 214.97866 * 22 12 11 42 42 H 1.09004 * 117.49955 * 359.97438 * 22 12 11 43 43 H 1.09001 * 110.54651 * 216.75575 * 23 6 5 44 44 H 1.09004 * 110.35896 * 94.16121 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3326 1.4428 1.2126 6 6 5.7408 1.0076 0.7500 7 1 5.8672 -0.0707 0.8467 8 6 6.8109 1.7439 1.5142 9 8 6.5020 2.5540 2.3622 10 7 8.1112 1.5028 1.2545 11 6 9.1515 2.2190 1.9969 12 6 10.5291 1.7322 1.5426 13 6 10.8867 2.0377 0.1110 14 1 10.7067 1.3023 -0.6593 15 6 11.4439 3.2558 -0.2155 16 7 11.5468 4.1976 0.6967 17 14 12.0528 3.5686 -1.9536 18 1 10.9238 3.4233 -2.9073 19 1 12.6046 4.9443 -2.0448 20 1 13.1148 2.5866 -2.2903 21 6 11.0451 0.4193 2.1351 22 6 11.6600 1.7510 2.5729 23 6 5.7300 1.4276 -0.7364 24 6 4.2638 1.4429 -1.1089 25 8 3.8354 1.4493 -2.2435 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 4.3696 2.4431 1.6440 34 1 3.9370 0.7335 1.9396 35 1 8.3583 0.8552 0.5759 36 1 9.0630 3.2885 1.8062 37 1 9.0326 2.0290 3.0637 38 1 11.8703 5.0782 0.4503 39 1 10.4034 -0.0974 2.8487 40 1 11.6438 -0.2233 1.4894 41 1 12.6630 1.9840 2.2151 42 1 11.4228 2.1106 3.5742 43 1 6.2702 0.7010 -1.3433 44 1 6.1635 2.4209 -0.8530 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412312064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -79.322321 kcal Electronic energy + Delta-G solvation = -23810.489912 eV Core-core repulsion = 20341.156888 eV Total energy + Delta-G solvation = -3469.333024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85883 -40.30116 -38.48982 -37.45883 -35.72483 -34.94180 -33.94925 -32.47467 -28.89773 -28.28979 -27.44692 -26.70281 -23.91031 -22.90392 -22.70647 -21.31125 -20.82144 -20.44825 -18.59587 -18.11399 -17.81786 -16.94735 -16.70147 -16.60759 -16.12679 -16.06804 -15.54201 -15.34651 -14.95595 -14.76269 -14.64162 -14.36663 -14.08588 -13.68185 -13.50776 -13.45100 -13.07569 -12.91390 -12.82809 -12.78749 -12.45556 -12.42902 -12.36604 -12.17203 -12.00831 -11.64755 -11.46098 -11.14799 -10.84686 -10.76016 -10.43050 -10.02890 -9.81592 -9.74025 -8.08820 -6.21321 1.44376 1.44627 1.46501 1.51618 1.66669 1.90005 2.35519 2.44184 3.19621 3.21524 3.38064 3.54201 3.84265 3.87462 4.01801 4.05244 4.21704 4.30723 4.35275 4.50447 4.55733 4.59546 4.62358 4.68804 4.68921 4.76384 4.80881 4.89343 4.97730 5.03719 5.08112 5.16100 5.20271 5.31200 5.34458 5.56706 5.60820 5.64312 5.70640 5.80406 6.01304 6.38877 6.76749 6.87033 7.05259 7.37042 7.48674 8.98266 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.003555 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.665373 B = 7873.298245 C = 8701.685001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.613 5.613 5 C 0.120 3.880 6 C -0.106 4.106 7 H 0.152 0.848 8 C 0.517 3.483 9 O -0.587 6.587 10 N -0.693 5.693 11 C 0.179 3.821 12 C 0.007 3.993 13 C -0.505 4.505 14 H 0.066 0.934 15 C 0.027 3.973 16 N -0.907 5.907 17 Si 0.944 3.056 18 H -0.271 1.271 19 H -0.294 1.294 20 H -0.271 1.271 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.142 4.142 24 C 0.516 3.484 25 O -0.575 6.575 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.412 0.588 36 H 0.029 0.971 37 H 0.040 0.960 38 H 0.258 0.742 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.516 -10.310 1.730 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.345 5.345 5 C -0.003 4.003 6 C -0.128 4.128 7 H 0.170 0.830 8 C 0.304 3.696 9 O -0.469 6.469 10 N -0.342 5.342 11 C 0.055 3.945 12 C 0.006 3.994 13 C -0.542 4.542 14 H 0.084 0.916 15 C -0.173 4.173 16 N -0.545 5.545 17 Si 0.770 3.230 18 H -0.196 1.196 19 H -0.220 1.220 20 H -0.196 1.196 21 C -0.212 4.212 22 C -0.201 4.201 23 C -0.182 4.182 24 C 0.304 3.696 25 O -0.455 6.455 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.248 0.752 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.892 -9.554 1.804 19.491 hybrid contribution 0.943 0.665 -1.164 1.639 sum -15.949 -8.889 0.640 18.270 Atomic orbital electron populations 1.21677 0.93737 1.02618 1.02412 1.21847 0.97276 0.95906 1.02248 1.21651 0.76666 0.98209 1.03695 1.48451 1.07079 1.72062 1.06935 1.22036 0.87623 1.03890 0.86731 1.22146 0.93193 1.03660 0.93784 0.83011 1.20566 0.83810 0.82319 0.82934 1.90666 1.82723 1.37247 1.36238 1.45831 1.04837 1.43086 1.40438 1.20564 0.86732 0.94651 0.92602 1.19045 0.90171 0.96615 0.93589 1.20667 1.40702 1.00646 0.92214 0.91629 1.25644 0.95408 0.96456 0.99834 1.70085 1.46772 1.03111 1.34511 0.85842 0.79008 0.76760 0.81375 1.19594 1.22035 1.19629 1.23019 1.04266 0.90444 1.03433 1.22439 0.98328 1.01259 0.98109 1.22302 0.94300 1.05724 0.95904 1.21069 0.89828 0.74447 0.84215 1.90689 1.79363 1.52742 1.22710 0.91717 0.91266 0.92940 0.93517 0.90488 0.88012 0.91404 0.90584 0.86845 0.75183 0.95227 0.94141 0.93303 0.88929 0.89713 0.92118 0.91088 0.85202 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.13 -1.97 6.26 30.60 0.19 -1.78 16 3 C 0.12 2.07 5.93 86.38 0.51 2.58 16 4 N -0.61 -13.15 2.93 -817.98 -2.40 -15.55 16 5 C 0.12 2.34 6.71 86.83 0.58 2.92 16 6 C -0.11 -2.21 3.53 -10.54 -0.04 -2.24 16 7 H 0.15 2.08 8.14 -2.39 -0.02 2.07 16 8 C 0.52 15.90 7.06 87.66 0.62 16.52 16 9 O -0.59 -22.69 15.50 -3.02 -0.05 -22.74 16 10 N -0.69 -23.05 5.48 -463.05 -2.54 -25.59 16 11 C 0.18 7.53 5.50 86.38 0.48 8.01 16 12 C 0.01 0.29 1.38 -52.93 -0.07 0.21 16 13 C -0.50 -24.59 8.63 25.60 0.22 -24.37 16 14 H 0.07 3.06 7.82 -2.91 -0.02 3.04 16 15 C 0.03 1.42 5.39 84.65 0.46 1.87 16 16 N -0.91 -50.20 12.91 21.45 0.28 -49.93 16 17 Si 0.94 41.48 29.55 68.60 2.03 43.51 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 C -0.17 -6.43 9.96 30.62 0.30 -6.12 16 22 C -0.16 -7.09 9.42 30.62 0.29 -6.80 16 23 C -0.14 -3.32 6.41 30.53 0.20 -3.12 16 24 C 0.52 13.98 8.02 87.90 0.71 14.69 16 25 O -0.57 -20.06 17.59 -3.02 -0.05 -20.12 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.39 7.92 -2.39 -0.02 1.37 16 33 H 0.08 1.82 6.96 -2.38 -0.02 1.81 16 34 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.41 12.00 8.37 -92.71 -0.78 11.23 16 36 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 38 H 0.26 13.94 8.32 -92.71 -0.77 13.16 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.10 2.61 7.89 -2.38 -0.02 2.59 16 Total: -1.00 -66.70 368.75 2.63 -64.06 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.21 Total: 24.92 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.16 Total: 1.43 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -4.66 Total: -91.06 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.10 Total: -42.85 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -66.70 2.63 -64.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412312064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.258 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds