Wall clock time and date at job start Tue Mar 31 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00552 * 2 1 4 4 N 1.46496 * 109.47290 * 124.99881 * 3 2 1 5 5 C 1.46502 * 119.99993 * 94.89822 * 4 3 2 6 6 C 1.50697 * 109.47491 * 270.00324 * 5 4 3 7 7 H 1.07999 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99904 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99895 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47003 * 269.99807 * 10 8 6 12 12 H 1.48500 * 109.47359 * 29.99640 * 10 8 6 13 13 H 1.48498 * 109.47243 * 150.00141 * 10 8 6 14 14 C 1.34773 * 120.00372 * 274.90590 * 4 3 2 15 15 O 1.21287 * 120.00534 * 174.81284 * 14 4 3 16 16 C 1.50702 * 120.00001 * 354.80254 * 14 4 3 17 17 H 1.08996 * 110.85282 * 38.68746 * 16 14 4 18 18 C 1.54622 * 110.97359 * 274.89638 * 16 14 4 19 19 C 1.51278 * 104.19708 * 217.08210 * 18 16 14 20 20 O 1.21284 * 124.94187 * 196.21640 * 19 18 16 21 21 N 1.34413 * 110.11628 * 16.25055 * 19 18 16 22 22 C 1.46501 * 124.34797 * 180.38524 * 21 19 18 23 23 C 1.52998 * 109.47138 * 89.97935 * 22 21 19 24 24 C 1.52996 * 109.47045 * 179.97438 * 23 22 21 25 25 C 1.46768 * 111.29890 * 0.41027 * 21 19 18 26 26 H 1.07995 * 120.00723 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99645 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99645 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46724 * 5.00196 * 3 2 1 30 30 H 1.08995 * 109.47624 * 245.00549 * 3 2 1 31 31 H 1.09001 * 109.47153 * 150.00281 * 5 4 3 32 32 H 1.09007 * 109.47107 * 30.00213 * 5 4 3 33 33 H 0.96994 * 120.00261 * 359.97438 * 9 8 6 34 34 H 1.09000 * 110.48659 * 335.76421 * 18 16 14 35 35 H 1.09010 * 110.48771 * 98.26577 * 18 16 14 36 36 H 1.09002 * 109.46755 * 209.97814 * 22 21 19 37 37 H 1.08994 * 109.47167 * 329.97624 * 22 21 19 38 38 H 1.09000 * 109.46753 * 299.99893 * 23 22 21 39 39 H 1.09004 * 109.46821 * 59.99774 * 23 22 21 40 40 H 1.09008 * 109.47204 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47499 * 299.99732 * 24 23 22 42 42 H 1.09004 * 109.47255 * 60.00335 * 24 23 22 43 43 H 1.08996 * 110.24164 * 223.97790 * 25 21 19 44 44 H 1.09000 * 110.24298 * 101.98345 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3888 0.9261 0.9425 6 6 4.5202 -0.5538 1.1946 7 1 3.6516 -1.1341 1.4686 8 6 5.7494 -1.1669 1.0755 9 7 6.8071 -0.4604 0.7413 10 14 5.9121 -3.0015 1.3873 11 1 6.2125 -3.2349 2.8228 12 1 4.6395 -3.6790 1.0314 13 1 7.0138 -3.5492 0.5558 14 6 2.5663 1.7294 2.3461 15 8 3.3093 1.6626 3.3024 16 6 1.1651 2.2573 2.5162 17 1 0.4611 1.6934 1.9043 18 6 1.0986 3.7667 2.1873 19 6 0.1117 4.3219 3.1905 20 8 -0.4340 5.4016 3.1037 21 7 -0.0718 3.4449 4.1925 22 6 -0.9705 3.6639 5.3285 23 6 -2.3622 3.1266 4.9887 24 6 -3.3006 3.3548 6.1754 25 6 0.7444 2.2400 4.0024 26 1 -0.5401 -0.9352 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 5.0235 1.4714 1.6410 32 1 4.6970 1.1494 -0.0790 33 1 6.7224 0.4920 0.5783 34 1 2.0769 4.2292 2.3184 35 1 0.7385 3.9200 1.1699 36 1 -0.5834 3.1424 6.2038 37 1 -1.0348 4.7311 5.5404 38 1 -2.7492 3.6482 4.1134 39 1 -2.2978 2.0593 4.7768 40 1 -4.2923 2.9724 5.9332 41 1 -2.9134 2.8330 7.0505 42 1 -3.3651 4.4221 6.3877 43 1 0.1559 1.3481 4.2176 44 1 1.6248 2.2757 4.6441 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412363479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:04 Heat of formation + Delta-G solvation = -57.540732 kcal Electronic energy + Delta-G solvation = -24388.446635 eV Core-core repulsion = 20920.058132 eV Total energy + Delta-G solvation = -3468.388503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83326 -39.04799 -36.48128 -35.87626 -34.90896 -33.49965 -32.22415 -31.54745 -27.89629 -27.34872 -26.44486 -25.57737 -23.59426 -22.07440 -21.88240 -19.98922 -19.54557 -18.56833 -17.44158 -17.00492 -16.83125 -15.94644 -15.59463 -15.10685 -14.84222 -14.62363 -14.22244 -13.84748 -13.80851 -13.75146 -13.49357 -13.24088 -12.82940 -12.79439 -12.52810 -12.35158 -12.09332 -11.89550 -11.62434 -11.47501 -11.41637 -11.20732 -11.10833 -10.95686 -10.81957 -10.61602 -10.16794 -9.96336 -9.37650 -9.19573 -9.13649 -8.76666 -8.43167 -7.80075 -6.43019 -4.15506 2.36453 2.49806 2.83248 3.10021 3.40137 3.43274 3.57653 3.68450 4.23860 4.41532 4.49382 4.71365 4.71561 4.77687 4.89082 5.01065 5.12066 5.13138 5.19811 5.25205 5.32456 5.37187 5.42251 5.47484 5.54671 5.58506 5.69865 5.74561 5.80764 5.84233 5.92386 5.99142 6.13092 6.42635 6.67100 6.80787 6.87242 6.99083 7.01850 7.25197 7.96647 8.08054 8.11470 8.36728 8.70091 8.82663 9.53708 10.94302 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.003822 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.842183 B = 7324.612522 C = 7393.712086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C 0.136 3.864 4 N -0.586 5.586 5 C 0.236 3.764 6 C -0.603 4.603 7 H 0.053 0.947 8 C 0.020 3.980 9 N -0.910 5.910 10 Si 1.073 2.927 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.284 1.284 14 C 0.520 3.480 15 O -0.531 6.531 16 C -0.127 4.127 17 H 0.110 0.890 18 C -0.141 4.141 19 C 0.523 3.477 20 O -0.536 6.536 21 N -0.617 5.617 22 C 0.125 3.875 23 C -0.142 4.142 24 C -0.149 4.149 25 C 0.115 3.885 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.466 5.033 3.510 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.167 4.167 3 C 0.013 3.987 4 N -0.316 5.316 5 C 0.116 3.884 6 C -0.642 4.642 7 H 0.072 0.928 8 C -0.185 4.185 9 N -0.546 5.546 10 Si 0.901 3.099 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.306 3.694 15 O -0.408 6.408 16 C -0.150 4.150 17 H 0.128 0.872 18 C -0.181 4.181 19 C 0.311 3.689 20 O -0.413 6.413 21 N -0.351 5.351 22 C 0.004 3.996 23 C -0.180 4.180 24 C -0.207 4.207 25 C -0.008 4.008 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.260 4.332 4.055 17.308 hybrid contribution -1.165 0.955 -0.145 1.513 sum -17.424 5.287 3.911 18.624 Atomic orbital electron populations 1.23754 0.95718 1.01432 1.03576 1.23617 0.95833 1.00321 0.96938 1.20642 0.92390 0.94594 0.91093 1.47991 1.12450 1.63609 1.07565 1.19420 0.76019 0.96556 0.96378 1.22239 0.97201 0.93063 1.51685 0.92835 1.25783 0.91899 1.06760 0.94009 1.70775 1.31064 1.09200 1.43537 0.83487 0.75447 0.74142 0.76844 1.21373 1.21557 1.20953 1.19757 0.87720 0.78537 0.83415 1.90691 1.56545 1.55146 1.38378 1.22342 0.97753 0.96802 0.98056 0.87192 1.22281 1.01224 0.94222 1.00381 1.20770 0.81618 0.83869 0.82692 1.90705 1.52119 1.21370 1.77150 1.48325 1.43448 1.19573 1.23721 1.21443 0.88555 1.02108 0.87534 1.21918 0.95098 1.01700 0.99312 1.21691 0.99196 1.01916 0.97875 1.22057 0.95808 0.87281 0.95664 0.88569 0.89020 0.86015 0.91217 0.89339 0.94871 0.95889 0.92195 0.87255 0.87511 0.90176 0.90012 0.91573 0.91609 0.92413 0.92491 0.92510 0.90029 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.41 13.28 29.02 0.39 -2.03 16 2 C -0.15 -2.15 9.52 -36.02 -0.34 -2.50 16 3 C 0.14 2.03 5.55 -5.20 -0.03 2.00 16 4 N -0.59 -11.35 2.45 -176.44 -0.43 -11.78 16 5 C 0.24 5.74 4.47 -5.19 -0.02 5.72 16 6 C -0.60 -16.33 9.39 -34.44 -0.32 -16.66 16 7 H 0.05 1.46 7.56 -52.49 -0.40 1.06 16 8 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 9 N -0.91 -26.94 13.65 55.43 0.76 -26.19 16 10 Si 1.07 24.91 29.90 -169.99 -5.08 19.82 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.52 9.80 6.78 -10.99 -0.07 9.73 16 15 O -0.53 -12.28 15.19 5.55 0.08 -12.19 16 16 C -0.13 -1.74 2.51 -90.15 -0.23 -1.97 16 17 H 0.11 1.33 5.55 -51.93 -0.29 1.04 16 18 C -0.14 -1.79 6.08 -26.75 -0.16 -1.96 16 19 C 0.52 7.43 8.02 -10.86 -0.09 7.34 16 20 O -0.54 -9.19 17.59 5.55 0.10 -9.10 16 21 N -0.62 -7.65 2.93 -172.42 -0.51 -8.15 16 22 C 0.13 1.27 5.93 -4.04 -0.02 1.25 16 23 C -0.14 -1.27 6.26 -26.73 -0.17 -1.43 16 24 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 25 C 0.11 1.47 6.83 -3.12 -0.02 1.45 16 26 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.09 0.91 7.65 -52.48 -0.40 0.51 16 28 H 0.12 2.09 7.81 -52.48 -0.41 1.68 16 29 H 0.07 0.82 5.54 -51.93 -0.29 0.53 16 30 H 0.09 1.29 7.84 -51.93 -0.41 0.89 16 31 H 0.03 0.91 7.37 -51.93 -0.38 0.52 16 32 H 0.02 0.56 7.72 -51.93 -0.40 0.16 16 33 H 0.27 7.85 7.22 -40.82 -0.29 7.55 16 34 H 0.11 1.47 7.89 -51.93 -0.41 1.06 16 35 H 0.11 1.14 7.55 -51.92 -0.39 0.75 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.41 6.85 -51.93 -0.36 1.06 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -33.25 362.56 -7.46 -40.71 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.02 Total: 0.70 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.82 Total: 0.71 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.18 Total: -46.12 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.18 Total: -21.29 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.25 -7.46 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412363479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.826 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds