Wall clock time and date at job start Tue Mar 31 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00552 * 2 1 4 4 N 1.46496 * 109.47290 * 124.99881 * 3 2 1 5 5 C 1.46502 * 119.99993 * 94.89822 * 4 3 2 6 6 C 1.50697 * 109.47491 * 270.00324 * 5 4 3 7 7 H 1.07999 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99904 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99895 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47003 * 269.99807 * 10 8 6 12 12 H 1.48500 * 109.47359 * 29.99640 * 10 8 6 13 13 H 1.48498 * 109.47243 * 150.00141 * 10 8 6 14 14 C 1.34773 * 120.00372 * 274.90590 * 4 3 2 15 15 O 1.21287 * 120.00534 * 174.81284 * 14 4 3 16 16 C 1.50702 * 120.00001 * 354.80254 * 14 4 3 17 17 H 1.08996 * 110.85282 * 38.68746 * 16 14 4 18 18 C 1.54622 * 110.97359 * 274.89638 * 16 14 4 19 19 C 1.51278 * 104.19708 * 217.08210 * 18 16 14 20 20 O 1.21284 * 124.94187 * 196.21640 * 19 18 16 21 21 N 1.34413 * 110.11628 * 16.25055 * 19 18 16 22 22 C 1.46501 * 124.34797 * 180.38524 * 21 19 18 23 23 C 1.52998 * 109.47138 * 89.97935 * 22 21 19 24 24 C 1.52996 * 109.47045 * 179.97438 * 23 22 21 25 25 C 1.46768 * 111.29890 * 0.41027 * 21 19 18 26 26 H 1.07995 * 120.00723 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99645 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99645 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46724 * 5.00196 * 3 2 1 30 30 H 1.08995 * 109.47624 * 245.00549 * 3 2 1 31 31 H 1.09001 * 109.47153 * 150.00281 * 5 4 3 32 32 H 1.09007 * 109.47107 * 30.00213 * 5 4 3 33 33 H 0.96994 * 120.00261 * 359.97438 * 9 8 6 34 34 H 1.09000 * 110.48659 * 335.76421 * 18 16 14 35 35 H 1.09010 * 110.48771 * 98.26577 * 18 16 14 36 36 H 1.09002 * 109.46755 * 209.97814 * 22 21 19 37 37 H 1.08994 * 109.47167 * 329.97624 * 22 21 19 38 38 H 1.09000 * 109.46753 * 299.99893 * 23 22 21 39 39 H 1.09004 * 109.46821 * 59.99774 * 23 22 21 40 40 H 1.09008 * 109.47204 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47499 * 299.99732 * 24 23 22 42 42 H 1.09004 * 109.47255 * 60.00335 * 24 23 22 43 43 H 1.08996 * 110.24164 * 223.97790 * 25 21 19 44 44 H 1.09000 * 110.24298 * 101.98345 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3888 0.9261 0.9425 6 6 4.5202 -0.5538 1.1946 7 1 3.6516 -1.1341 1.4686 8 6 5.7494 -1.1669 1.0755 9 7 6.8071 -0.4604 0.7413 10 14 5.9121 -3.0015 1.3873 11 1 6.2125 -3.2349 2.8228 12 1 4.6395 -3.6790 1.0314 13 1 7.0138 -3.5492 0.5558 14 6 2.5663 1.7294 2.3461 15 8 3.3093 1.6626 3.3024 16 6 1.1651 2.2573 2.5162 17 1 0.4611 1.6934 1.9043 18 6 1.0986 3.7667 2.1873 19 6 0.1117 4.3219 3.1905 20 8 -0.4340 5.4016 3.1037 21 7 -0.0718 3.4449 4.1925 22 6 -0.9705 3.6639 5.3285 23 6 -2.3622 3.1266 4.9887 24 6 -3.3006 3.3548 6.1754 25 6 0.7444 2.2400 4.0024 26 1 -0.5401 -0.9352 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 5.0235 1.4714 1.6410 32 1 4.6970 1.1494 -0.0790 33 1 6.7224 0.4920 0.5783 34 1 2.0769 4.2292 2.3184 35 1 0.7385 3.9200 1.1699 36 1 -0.5834 3.1424 6.2038 37 1 -1.0348 4.7311 5.5404 38 1 -2.7492 3.6482 4.1134 39 1 -2.2978 2.0593 4.7768 40 1 -4.2923 2.9724 5.9332 41 1 -2.9134 2.8330 7.0505 42 1 -3.3651 4.4221 6.3877 43 1 0.1559 1.3481 4.2176 44 1 1.6248 2.2757 4.6441 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412363479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:03 Heat of formation + Delta-G solvation = -78.117367 kcal Electronic energy + Delta-G solvation = -24389.338905 eV Core-core repulsion = 20920.058132 eV Total energy + Delta-G solvation = -3469.280773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01831 -40.45024 -37.67315 -37.28593 -35.89051 -35.25613 -33.70314 -32.54726 -29.36264 -28.71213 -27.42994 -26.83561 -25.35764 -23.42143 -22.73274 -21.14000 -20.60096 -19.90991 -19.12968 -18.57921 -17.92711 -17.13344 -16.91219 -16.39635 -16.09168 -15.63563 -15.57584 -15.40652 -15.01736 -14.78448 -14.71415 -14.47110 -14.29226 -14.03651 -13.77711 -13.61049 -13.24377 -13.09299 -12.85919 -12.65884 -12.52358 -12.48451 -12.36930 -12.23439 -12.11814 -11.94501 -11.65991 -11.17297 -11.11557 -10.72100 -10.58805 -10.32542 -9.79916 -9.52702 -8.64582 -6.39545 1.28921 1.39138 1.50590 1.59218 1.61087 1.76353 1.88632 2.27511 2.55378 3.11016 3.14915 3.32664 3.60131 3.76840 3.96947 3.99765 4.02847 4.07473 4.12916 4.32498 4.43803 4.46463 4.50368 4.56765 4.61743 4.69436 4.75007 4.75062 4.82988 4.91782 4.95242 5.14271 5.14859 5.18245 5.31743 5.51432 5.52934 5.74997 5.82783 5.86683 5.96137 6.18592 6.49741 6.62184 7.00458 7.24252 7.40411 8.70824 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.003822 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.842183 B = 7324.612522 C = 7393.712086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.185 4.185 3 C 0.134 3.866 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.605 4.605 7 H 0.049 0.951 8 C -0.033 4.033 9 N -0.936 5.936 10 Si 1.117 2.883 11 H -0.282 1.282 12 H -0.267 1.267 13 H -0.280 1.280 14 C 0.516 3.484 15 O -0.584 6.584 16 C -0.110 4.110 17 H 0.137 0.863 18 C -0.136 4.136 19 C 0.520 3.480 20 O -0.569 6.569 21 N -0.610 5.610 22 C 0.118 3.882 23 C -0.134 4.134 24 C -0.146 4.146 25 C 0.118 3.882 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.085 0.915 31 H -0.005 1.005 32 H 0.020 0.980 33 H 0.256 0.744 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.107 0.893 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 4.205 3.443 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.012 3.988 4 N -0.319 5.319 5 C 0.125 3.875 6 C -0.643 4.643 7 H 0.067 0.933 8 C -0.231 4.231 9 N -0.574 5.574 10 Si 0.939 3.061 11 H -0.208 1.208 12 H -0.191 1.191 13 H -0.205 1.205 14 C 0.304 3.696 15 O -0.464 6.464 16 C -0.131 4.131 17 H 0.155 0.845 18 C -0.176 4.176 19 C 0.309 3.691 20 O -0.449 6.449 21 N -0.342 5.342 22 C -0.003 4.003 23 C -0.173 4.173 24 C -0.204 4.204 25 C -0.005 4.005 26 H 0.127 0.873 27 H 0.140 0.860 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.013 0.987 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.448 3.503 3.975 20.157 hybrid contribution -0.258 1.250 -0.107 1.281 sum -19.706 4.754 3.868 20.637 Atomic orbital electron populations 1.24042 0.94356 1.03484 0.98376 1.23283 0.96862 0.98533 1.01757 1.20916 0.92181 0.96476 0.89203 1.47997 1.11233 1.63220 1.09459 1.18938 0.78932 0.94838 0.94819 1.22520 0.96908 0.94372 1.50518 0.93281 1.27227 0.91865 1.10615 0.93387 1.70895 1.31928 1.08753 1.45780 0.82933 0.76537 0.69690 0.76983 1.20799 1.19148 1.20523 1.20608 0.89356 0.77396 0.82282 1.90667 1.58521 1.57165 1.40065 1.22219 0.94240 0.97367 0.99317 0.84497 1.22303 1.00530 0.93024 1.01746 1.20918 0.81438 0.83562 0.83218 1.90693 1.53471 1.22682 1.78021 1.48408 1.43114 1.18955 1.23769 1.21675 0.89112 1.02048 0.87419 1.21845 0.94291 1.01731 0.99411 1.21677 0.99198 1.02050 0.97485 1.22011 0.95548 0.88328 0.94615 0.87285 0.85971 0.89551 0.87186 0.89719 0.98747 0.96233 0.93479 0.88325 0.84653 0.88386 0.90884 0.93085 0.90850 0.91637 0.91492 0.92693 0.87473 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 13.28 67.79 0.90 -2.21 16 2 C -0.19 -5.01 9.52 25.65 0.24 -4.77 16 3 C 0.13 3.75 5.55 85.63 0.48 4.23 16 4 N -0.59 -22.92 2.45 -830.51 -2.04 -24.96 16 5 C 0.25 12.50 4.47 85.63 0.38 12.89 16 6 C -0.60 -33.61 9.39 25.60 0.24 -33.37 16 7 H 0.05 2.72 7.56 -2.91 -0.02 2.70 16 8 C -0.03 -1.88 5.46 84.66 0.46 -1.41 16 9 N -0.94 -57.18 13.65 21.45 0.29 -56.88 16 10 Si 1.12 50.31 29.90 68.60 2.05 52.36 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 C 0.52 19.33 6.78 87.66 0.59 19.93 16 15 O -0.58 -27.87 15.19 -3.05 -0.05 -27.91 16 16 C -0.11 -2.74 2.51 -10.49 -0.03 -2.76 16 17 H 0.14 2.69 5.55 -2.39 -0.01 2.68 16 18 C -0.14 -3.16 6.08 30.58 0.19 -2.97 16 19 C 0.52 13.86 8.02 87.90 0.71 14.57 16 20 O -0.57 -18.82 17.59 -3.04 -0.05 -18.87 16 21 N -0.61 -13.89 2.93 -818.01 -2.40 -16.29 16 22 C 0.12 2.17 5.93 86.38 0.51 2.68 16 23 C -0.13 -2.06 6.26 30.59 0.19 -1.87 16 24 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 25 C 0.12 2.78 6.83 86.83 0.59 3.37 16 26 H 0.11 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.12 1.62 7.65 -2.91 -0.02 1.60 16 28 H 0.09 2.96 7.81 -2.91 -0.02 2.94 16 29 H 0.11 2.16 5.54 -2.39 -0.01 2.14 16 30 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 31 H -0.01 -0.32 7.37 -2.39 -0.02 -0.34 16 32 H 0.02 1.00 7.72 -2.38 -0.02 0.98 16 33 H 0.26 15.74 7.22 -92.71 -0.67 15.07 16 34 H 0.10 2.58 7.89 -2.39 -0.02 2.56 16 35 H 0.14 2.37 7.55 -2.38 -0.02 2.35 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.49 7.92 -2.39 -0.02 1.47 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 2.14 6.85 -2.39 -0.02 2.13 16 Total: -1.00 -76.09 362.56 5.06 -71.03 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.07 Total: 14.24 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.18 Total: 7.29 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.14 Total: -98.13 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.10 Total: -46.78 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal Total: -76.09 5.06 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412363479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.088 kcal (2) G-P(sol) polarization free energy of solvation -76.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds