Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00194 * 2 1 4 4 N 1.46496 * 109.47120 * 124.99705 * 3 2 1 5 5 C 1.46500 * 120.00271 * 266.30441 * 4 3 2 6 6 C 1.50703 * 109.47075 * 264.59375 * 5 4 3 7 7 H 1.07997 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99860 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00177 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99691 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46660 * 90.00654 * 10 8 6 12 12 H 1.48505 * 109.46994 * 210.00152 * 10 8 6 13 13 H 1.48497 * 109.47544 * 330.00732 * 10 8 6 14 14 C 1.34778 * 120.00079 * 86.30502 * 4 3 2 15 15 O 1.21285 * 119.99942 * 5.62067 * 14 4 3 16 16 C 1.50697 * 120.00355 * 185.62327 * 14 4 3 17 17 H 1.09001 * 110.85513 * 323.25727 * 16 14 4 18 18 C 1.54628 * 110.97169 * 87.08811 * 16 14 4 19 19 C 1.51289 * 104.25800 * 142.70122 * 18 16 14 20 20 O 1.21282 * 124.94609 * 164.01059 * 19 18 16 21 21 N 1.34424 * 110.10925 * 344.14375 * 19 18 16 22 22 C 1.46497 * 124.34749 * 179.43531 * 21 19 18 23 23 C 1.53005 * 109.47302 * 269.70598 * 22 21 19 24 24 C 1.52996 * 109.47249 * 180.02562 * 23 22 21 25 25 C 1.46764 * 111.30101 * 359.17512 * 21 19 18 26 26 H 1.07997 * 119.99665 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99824 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99665 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46843 * 4.99830 * 3 2 1 30 30 H 1.09002 * 109.46887 * 245.00130 * 3 2 1 31 31 H 1.08999 * 109.47069 * 24.59035 * 5 4 3 32 32 H 1.08997 * 109.47110 * 144.59258 * 5 4 3 33 33 H 0.97005 * 120.00173 * 179.97438 * 9 8 6 34 34 H 1.08994 * 110.48700 * 261.59948 * 18 16 14 35 35 H 1.09001 * 110.48341 * 24.24046 * 18 16 14 36 36 H 1.09001 * 109.47278 * 149.70377 * 22 21 19 37 37 H 1.08998 * 109.47247 * 29.70167 * 22 21 19 38 38 H 1.08998 * 109.46618 * 299.99955 * 23 22 21 39 39 H 1.09001 * 109.47134 * 59.99691 * 23 22 21 40 40 H 1.08998 * 109.47169 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47148 * 299.99475 * 24 23 22 42 42 H 1.09001 * 109.47432 * 59.99718 * 24 23 22 43 43 H 1.08998 * 110.24401 * 136.28220 * 25 21 19 44 44 H 1.09003 * 110.24044 * 258.27350 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5858 1.9385 2.4010 6 6 3.0620 3.3674 2.4510 7 1 3.6137 3.7820 1.6204 8 6 2.7932 4.1453 3.5572 9 7 2.1218 3.6402 4.5689 10 14 3.3842 5.9163 3.6194 11 1 2.3413 6.8063 3.0487 12 1 3.6461 6.3014 5.0295 13 1 4.6346 6.0490 2.8295 14 6 4.2250 0.7985 1.0044 15 8 4.6000 0.3885 -0.0737 16 6 5.1357 0.7114 2.2019 17 1 5.0192 1.5856 2.8424 18 6 4.8857 -0.5930 2.9937 19 6 6.2624 -1.0191 3.4541 20 8 6.4823 -1.8326 4.3263 21 7 7.2064 -0.3626 2.7578 22 6 8.6478 -0.5292 2.9592 23 6 9.1367 0.4770 4.0031 24 6 10.6422 0.3034 4.2129 25 6 6.6074 0.5380 1.7657 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4991 1.9146 2.4824 32 1 3.0244 1.3801 3.2280 33 1 1.9330 4.1874 5.3473 34 1 4.2367 -0.4021 3.8483 35 1 4.4514 -1.3549 2.3463 36 1 9.1686 -0.3573 2.0171 37 1 8.8514 -1.5418 3.3074 38 1 8.9331 1.4896 3.6549 39 1 8.6159 0.3051 4.9451 40 1 10.9905 1.0204 4.9563 41 1 10.8461 -0.7092 4.5610 42 1 11.1626 0.4755 3.2708 43 1 7.1189 1.5005 1.7727 44 1 6.6565 0.0912 0.7727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412363482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = -59.548447 kcal Electronic energy + Delta-G solvation = -24434.236928 eV Core-core repulsion = 20965.761364 eV Total energy + Delta-G solvation = -3468.475565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55975 -38.93628 -36.25708 -35.56582 -34.66613 -33.53265 -32.26776 -31.23299 -27.75546 -27.40942 -26.59120 -25.41677 -23.29607 -22.16621 -21.72705 -19.83574 -19.21719 -18.30534 -17.12407 -16.67230 -16.39018 -15.77200 -15.65641 -15.09111 -14.67984 -14.53364 -14.39621 -14.11667 -13.55272 -13.52002 -13.21505 -12.97406 -12.63356 -12.51072 -12.30351 -12.15484 -11.90824 -11.62502 -11.46799 -11.39962 -11.20489 -11.08892 -10.97722 -10.90701 -10.77668 -10.69173 -10.27602 -9.86818 -9.69477 -9.31024 -9.00403 -8.64165 -8.53461 -7.87316 -6.26632 -4.35374 2.48370 2.76811 3.05007 3.17267 3.21950 3.25678 3.28849 3.86152 4.25821 4.54232 4.75646 4.91771 4.95779 5.04919 5.09461 5.18033 5.27449 5.31922 5.37244 5.47040 5.56659 5.60185 5.63930 5.74449 5.87442 5.90606 5.92587 6.02914 6.07440 6.12110 6.19719 6.24645 6.37881 6.62870 6.68257 6.85578 6.97403 7.10374 7.24772 7.42773 7.68103 7.95656 8.17406 8.35195 8.67829 8.84784 9.33469 10.79856 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.005681 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.180448 B = 4927.642083 C = 6628.431995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.587 5.587 5 C 0.236 3.764 6 C -0.544 4.544 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.887 5.887 10 Si 0.895 3.105 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.532 3.468 15 O -0.570 6.570 16 C -0.122 4.122 17 H 0.133 0.867 18 C -0.137 4.137 19 C 0.524 3.476 20 O -0.539 6.539 21 N -0.618 5.618 22 C 0.127 3.873 23 C -0.144 4.144 24 C -0.148 4.148 25 C 0.115 3.885 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.267 0.733 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -5.106 -4.365 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.316 5.316 5 C 0.116 3.884 6 C -0.582 4.582 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.319 3.681 15 O -0.451 6.451 16 C -0.143 4.143 17 H 0.150 0.850 18 C -0.178 4.178 19 C 0.313 3.687 20 O -0.416 6.416 21 N -0.352 5.352 22 C 0.005 3.995 23 C -0.183 4.183 24 C -0.206 4.206 25 C -0.008 4.008 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.380 -5.682 -4.254 10.240 hybrid contribution 0.091 1.211 0.231 1.236 sum 7.471 -4.472 -4.023 9.592 Atomic orbital electron populations 1.23781 0.95776 1.01615 1.01684 1.23378 0.96093 0.99272 0.98890 1.20442 0.92181 0.94797 0.90585 1.48180 1.12388 1.55831 1.15170 1.19507 0.96991 0.92896 0.78969 1.21491 1.36981 0.96501 1.03259 0.91972 1.24937 0.94733 0.98693 0.95280 1.69916 1.38936 1.36951 1.06708 0.86532 0.79321 0.84450 0.77421 1.20455 1.21020 1.19712 1.19879 0.82236 0.77138 0.88817 1.90596 1.75194 1.50941 1.28388 1.22247 0.93739 1.00899 0.97432 0.84957 1.22231 0.96059 0.97240 1.02231 1.20848 0.87614 0.79826 0.80446 1.90684 1.85120 1.34453 1.31366 1.48318 1.05968 1.43344 1.37573 1.21395 0.78869 1.00059 0.99131 1.21936 0.96295 0.99975 1.00052 1.21683 0.95362 1.01868 1.01644 1.22054 0.91854 0.94307 0.92539 0.88428 0.88848 0.87809 0.89750 0.90087 0.94298 0.94297 0.92371 0.86957 0.88020 0.90448 0.90199 0.91459 0.91415 0.92461 0.92616 0.92658 0.90139 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 14.32 29.01 0.42 -2.16 16 2 C -0.16 -2.42 9.82 -36.03 -0.35 -2.77 16 3 C 0.14 2.46 5.83 -5.19 -0.03 2.43 16 4 N -0.59 -11.37 2.46 -176.44 -0.43 -11.81 16 5 C 0.24 5.20 4.79 -5.19 -0.02 5.18 16 6 C -0.54 -13.24 8.74 -34.44 -0.30 -13.54 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -23.49 13.29 55.43 0.74 -22.76 16 10 Si 0.90 19.74 29.54 -169.99 -5.02 14.71 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 C 0.53 10.03 6.74 -10.99 -0.07 9.96 16 15 O -0.57 -11.53 15.20 5.55 0.08 -11.45 16 16 C -0.12 -2.05 2.52 -90.14 -0.23 -2.28 16 17 H 0.13 2.46 6.47 -51.93 -0.34 2.12 16 18 C -0.14 -2.22 6.15 -26.74 -0.16 -2.38 16 19 C 0.52 8.94 8.02 -10.85 -0.09 8.86 16 20 O -0.54 -10.70 17.59 5.56 0.10 -10.60 16 21 N -0.62 -9.09 2.93 -172.41 -0.51 -9.60 16 22 C 0.13 1.53 5.94 -4.04 -0.02 1.51 16 23 C -0.14 -1.64 6.26 -26.73 -0.17 -1.81 16 24 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 25 C 0.12 1.70 6.83 -3.12 -0.02 1.68 16 26 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 27 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 30 H 0.08 1.40 7.46 -51.93 -0.39 1.01 16 31 H 0.04 0.92 8.03 -51.93 -0.42 0.50 16 32 H 0.04 0.88 6.07 -51.93 -0.32 0.56 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 34 H 0.11 1.83 7.70 -51.93 -0.40 1.43 16 35 H 0.10 1.58 7.89 -51.93 -0.41 1.17 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.36 6.86 -51.93 -0.36 1.00 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -28.66 366.82 -7.50 -36.16 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.19 Total: 4.51 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.79 Total: 5.29 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.20 Total: -44.16 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.18 Total: -22.05 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.66 -7.50 -36.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412363482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.389 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds