Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00194 * 2 1 4 4 N 1.46496 * 109.47120 * 124.99705 * 3 2 1 5 5 C 1.46500 * 120.00271 * 266.30441 * 4 3 2 6 6 C 1.50703 * 109.47075 * 264.59375 * 5 4 3 7 7 H 1.07997 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99860 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00177 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99691 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46660 * 90.00654 * 10 8 6 12 12 H 1.48505 * 109.46994 * 210.00152 * 10 8 6 13 13 H 1.48497 * 109.47544 * 330.00732 * 10 8 6 14 14 C 1.34778 * 120.00079 * 86.30502 * 4 3 2 15 15 O 1.21285 * 119.99942 * 5.62067 * 14 4 3 16 16 C 1.50697 * 120.00355 * 185.62327 * 14 4 3 17 17 H 1.09001 * 110.85513 * 323.25727 * 16 14 4 18 18 C 1.54628 * 110.97169 * 87.08811 * 16 14 4 19 19 C 1.51289 * 104.25800 * 142.70122 * 18 16 14 20 20 O 1.21282 * 124.94609 * 164.01059 * 19 18 16 21 21 N 1.34424 * 110.10925 * 344.14375 * 19 18 16 22 22 C 1.46497 * 124.34749 * 179.43531 * 21 19 18 23 23 C 1.53005 * 109.47302 * 269.70598 * 22 21 19 24 24 C 1.52996 * 109.47249 * 180.02562 * 23 22 21 25 25 C 1.46764 * 111.30101 * 359.17512 * 21 19 18 26 26 H 1.07997 * 119.99665 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99824 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99665 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46843 * 4.99830 * 3 2 1 30 30 H 1.09002 * 109.46887 * 245.00130 * 3 2 1 31 31 H 1.08999 * 109.47069 * 24.59035 * 5 4 3 32 32 H 1.08997 * 109.47110 * 144.59258 * 5 4 3 33 33 H 0.97005 * 120.00173 * 179.97438 * 9 8 6 34 34 H 1.08994 * 110.48700 * 261.59948 * 18 16 14 35 35 H 1.09001 * 110.48341 * 24.24046 * 18 16 14 36 36 H 1.09001 * 109.47278 * 149.70377 * 22 21 19 37 37 H 1.08998 * 109.47247 * 29.70167 * 22 21 19 38 38 H 1.08998 * 109.46618 * 299.99955 * 23 22 21 39 39 H 1.09001 * 109.47134 * 59.99691 * 23 22 21 40 40 H 1.08998 * 109.47169 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47148 * 299.99475 * 24 23 22 42 42 H 1.09001 * 109.47432 * 59.99718 * 24 23 22 43 43 H 1.08998 * 110.24401 * 136.28220 * 25 21 19 44 44 H 1.09003 * 110.24044 * 258.27350 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5858 1.9385 2.4010 6 6 3.0620 3.3674 2.4510 7 1 3.6137 3.7820 1.6204 8 6 2.7932 4.1453 3.5572 9 7 2.1218 3.6402 4.5689 10 14 3.3842 5.9163 3.6194 11 1 2.3413 6.8063 3.0487 12 1 3.6461 6.3014 5.0295 13 1 4.6346 6.0490 2.8295 14 6 4.2250 0.7985 1.0044 15 8 4.6000 0.3885 -0.0737 16 6 5.1357 0.7114 2.2019 17 1 5.0192 1.5856 2.8424 18 6 4.8857 -0.5930 2.9937 19 6 6.2624 -1.0191 3.4541 20 8 6.4823 -1.8326 4.3263 21 7 7.2064 -0.3626 2.7578 22 6 8.6478 -0.5292 2.9592 23 6 9.1367 0.4770 4.0031 24 6 10.6422 0.3034 4.2129 25 6 6.6074 0.5380 1.7657 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4991 1.9146 2.4824 32 1 3.0244 1.3801 3.2280 33 1 1.9330 4.1874 5.3473 34 1 4.2367 -0.4021 3.8483 35 1 4.4514 -1.3549 2.3463 36 1 9.1686 -0.3573 2.0171 37 1 8.8514 -1.5418 3.3074 38 1 8.9331 1.4896 3.6549 39 1 8.6159 0.3051 4.9451 40 1 10.9905 1.0204 4.9563 41 1 10.8461 -0.7092 4.5610 42 1 11.1626 0.4755 3.2708 43 1 7.1189 1.5005 1.7727 44 1 6.6565 0.0912 0.7727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412363482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = -74.507392 kcal Electronic energy + Delta-G solvation = -24434.885597 eV Core-core repulsion = 20965.761364 eV Total energy + Delta-G solvation = -3469.124233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.92833 -40.40705 -37.62418 -37.03953 -35.81130 -35.07543 -33.89262 -32.38531 -29.41990 -28.82403 -27.76575 -26.65354 -25.04522 -23.52432 -22.72132 -21.07777 -20.46963 -19.79687 -18.76173 -18.20571 -17.87843 -17.20840 -16.94999 -16.46263 -16.13549 -16.09139 -15.56413 -15.40050 -14.76670 -14.68511 -14.60232 -14.40013 -14.09000 -13.96677 -13.71328 -13.33504 -13.07077 -12.98410 -12.81947 -12.79911 -12.59982 -12.42706 -12.37146 -12.23126 -12.21131 -11.98025 -11.66724 -11.65321 -11.13090 -10.76226 -10.58910 -10.25513 -9.75902 -9.49366 -8.19372 -6.33959 1.29086 1.40569 1.42658 1.45865 1.53656 1.63508 1.96092 2.35241 2.47893 3.11925 3.21558 3.46011 3.66555 3.87785 4.00265 4.03670 4.09135 4.18401 4.27314 4.34304 4.46612 4.53713 4.58272 4.60808 4.65588 4.75778 4.82843 4.88384 4.90916 5.01718 5.05746 5.15514 5.18094 5.25159 5.32718 5.55549 5.61611 5.69830 5.76091 5.93610 5.97880 6.06795 6.53248 6.81780 7.03216 7.25287 7.40245 8.85956 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.005681 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.180448 B = 4927.642083 C = 6628.431995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.141 3.859 4 N -0.590 5.590 5 C 0.252 3.748 6 C -0.546 4.546 7 H 0.057 0.943 8 C 0.025 3.975 9 N -0.918 5.918 10 Si 0.951 3.049 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.533 3.467 15 O -0.582 6.582 16 C -0.118 4.118 17 H 0.115 0.885 18 C -0.131 4.131 19 C 0.520 3.480 20 O -0.572 6.572 21 N -0.611 5.611 22 C 0.121 3.879 23 C -0.140 4.140 24 C -0.143 4.143 25 C 0.123 3.877 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 -4.666 -5.306 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.199 4.199 3 C 0.019 3.981 4 N -0.319 5.319 5 C 0.132 3.868 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.176 4.176 9 N -0.557 5.557 10 Si 0.777 3.223 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.321 3.679 15 O -0.464 6.464 16 C -0.140 4.140 17 H 0.133 0.867 18 C -0.172 4.172 19 C 0.309 3.691 20 O -0.452 6.452 21 N -0.343 5.343 22 C 0.001 3.999 23 C -0.179 4.179 24 C -0.200 4.200 25 C 0.001 3.999 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.241 -5.230 -5.233 11.075 hybrid contribution -0.222 1.061 0.470 1.181 sum 8.019 -4.169 -4.763 10.216 Atomic orbital electron populations 1.24025 0.95111 1.03004 0.98402 1.23205 0.96712 0.98096 1.01877 1.20531 0.91972 0.96011 0.89598 1.48164 1.13098 1.55771 1.14876 1.19130 0.95628 0.92071 0.80011 1.21686 1.36384 0.97490 1.02855 0.92498 1.25597 0.94910 1.02034 0.95054 1.70007 1.40211 1.38228 1.07260 0.85651 0.78996 0.80395 0.77256 1.20200 1.21058 1.19115 1.20097 0.82121 0.76609 0.89107 1.90586 1.75343 1.51476 1.28988 1.22135 0.94980 1.00401 0.96452 0.86671 1.22166 0.95937 0.97065 1.02002 1.20919 0.88253 0.79676 0.80278 1.90662 1.85584 1.36069 1.32905 1.48416 1.06938 1.42325 1.36638 1.21671 0.77300 1.00119 1.00836 1.21891 0.97811 0.99692 0.98493 1.21653 0.93453 1.02187 1.02749 1.22031 0.90451 0.95178 0.92276 0.87833 0.86570 0.88127 0.89874 0.90359 0.95971 0.95022 0.92391 0.87534 0.87364 0.87501 0.90614 0.91398 0.93987 0.92015 0.92413 0.90940 0.88268 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 14.32 67.78 0.97 -3.25 16 2 C -0.18 -5.39 9.82 25.64 0.25 -5.13 16 3 C 0.14 4.83 5.83 85.63 0.50 5.33 16 4 N -0.59 -22.88 2.46 -830.51 -2.04 -24.93 16 5 C 0.25 11.24 4.79 85.63 0.41 11.65 16 6 C -0.55 -26.55 8.74 25.60 0.22 -26.32 16 7 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.25 5.46 84.65 0.46 1.71 16 9 N -0.92 -48.84 13.29 21.45 0.28 -48.56 16 10 Si 0.95 40.04 29.54 68.60 2.03 42.06 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 14 C 0.53 19.91 6.74 87.66 0.59 20.50 16 15 O -0.58 -23.09 15.20 -3.04 -0.05 -23.14 16 16 C -0.12 -3.95 2.52 -10.49 -0.03 -3.98 16 17 H 0.12 4.31 6.47 -2.39 -0.02 4.29 16 18 C -0.13 -4.27 6.15 30.59 0.19 -4.08 16 19 C 0.52 17.73 8.02 87.90 0.71 18.43 16 20 O -0.57 -22.97 17.59 -3.04 -0.05 -23.02 16 21 N -0.61 -17.33 2.93 -817.98 -2.40 -19.73 16 22 C 0.12 2.72 5.94 86.38 0.51 3.23 16 23 C -0.14 -3.02 6.26 30.59 0.19 -2.83 16 24 C -0.14 -2.28 9.91 71.98 0.71 -1.57 16 25 C 0.12 3.46 6.83 86.83 0.59 4.05 16 26 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 27 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.10 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.08 2.81 7.69 -2.39 -0.02 2.79 16 30 H 0.08 2.69 7.46 -2.39 -0.02 2.67 16 31 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 32 H 0.03 1.46 6.07 -2.39 -0.01 1.45 16 33 H 0.27 13.60 8.31 -92.70 -0.77 12.82 16 34 H 0.11 3.57 7.70 -2.39 -0.02 3.55 16 35 H 0.11 3.36 7.89 -2.39 -0.02 3.34 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.80 7.92 -2.39 -0.02 1.78 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.09 2.61 6.86 -2.39 -0.02 2.59 16 Total: -1.00 -60.36 366.82 5.02 -55.34 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.96 Total: 24.24 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.29 Total: 17.73 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -4.16 Total: -93.21 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -0.10 Total: -46.16 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -60.36 5.02 -55.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412363482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.171 kcal (2) G-P(sol) polarization free energy of solvation -60.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds