Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 H 1.09002 * 109.47241 * 55.21892 * 3 2 1 5 5 C 1.50704 * 109.47595 * 175.21920 * 3 2 1 6 6 O 1.21278 * 119.99851 * 102.82848 * 5 3 2 7 7 N 1.34776 * 119.99733 * 282.83764 * 5 3 2 8 8 C 1.46509 * 119.99649 * 184.94246 * 7 5 3 9 9 C 1.52990 * 109.46742 * 175.49070 * 8 7 5 10 10 C 1.50698 * 115.55334 * 294.88633 * 9 8 7 11 11 H 1.08004 * 119.99941 * 94.53385 * 10 9 8 12 12 C 1.37875 * 120.00176 * 274.53669 * 10 9 8 13 13 N 1.31507 * 120.00002 * 4.06581 * 12 10 9 14 14 Si 1.86804 * 119.99835 * 184.06130 * 12 10 9 15 15 H 1.48490 * 109.47336 * 90.00037 * 14 12 10 16 16 H 1.48503 * 109.46973 * 210.00283 * 14 12 10 17 17 H 1.48498 * 109.47229 * 330.00014 * 14 12 10 18 18 C 1.53004 * 117.49919 * 149.22115 * 9 8 7 19 19 C 1.53006 * 117.50196 * 80.56518 * 9 8 7 20 20 N 1.46499 * 109.47224 * 295.21832 * 3 2 1 21 21 C 1.46765 * 124.34649 * 119.99609 * 20 3 2 22 22 C 1.54482 * 105.47218 * 197.04137 * 21 20 3 23 23 C 1.54630 * 101.76433 * 334.58468 * 22 21 20 24 24 C 1.34414 * 124.35239 * 300.02806 * 20 3 2 25 25 O 1.21284 * 124.94092 * 359.29799 * 24 20 3 26 26 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46541 * 299.99620 * 1 2 3 28 28 H 1.08993 * 109.47424 * 59.99717 * 1 2 3 29 29 H 1.08998 * 109.46897 * 239.99895 * 2 1 3 30 30 H 1.09002 * 109.47512 * 120.00496 * 2 1 3 31 31 H 0.96999 * 120.00359 * 4.94303 * 7 5 3 32 32 H 1.09001 * 109.46619 * 295.49327 * 8 7 5 33 33 H 1.09002 * 109.46653 * 55.49166 * 8 7 5 34 34 H 0.97010 * 119.99730 * 185.03996 * 13 12 10 35 35 H 1.09007 * 117.49457 * 0.02562 * 18 9 8 36 36 H 1.09002 * 117.50423 * 145.01563 * 18 9 8 37 37 H 1.09004 * 117.49751 * 214.97804 * 19 9 8 38 38 H 1.09000 * 117.49662 * 359.96815 * 19 9 8 39 39 H 1.08992 * 110.25165 * 316.04024 * 21 20 3 40 40 H 1.09003 * 110.24583 * 78.04587 * 21 20 3 41 41 H 1.08996 * 110.97226 * 92.70587 * 22 21 20 42 42 H 1.09006 * 110.96951 * 216.46943 * 22 21 20 43 43 H 1.09000 * 110.48636 * 266.11693 * 23 22 21 44 44 H 1.09001 * 110.48496 * 143.48070 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6085 1.9804 0.8441 5 6 3.5424 1.4441 0.1184 6 8 4.2276 1.6495 -0.8610 7 7 4.1245 1.2173 1.3127 8 6 5.5790 1.3257 1.4510 9 6 5.9675 1.1324 2.9181 10 6 5.4730 2.1937 3.8667 11 1 4.5480 2.0484 4.4050 12 6 6.2014 3.3503 4.0475 13 7 7.2851 3.5633 3.3336 14 14 5.6488 4.6149 5.3065 15 1 6.2728 4.3118 6.6194 16 1 6.0638 5.9698 4.8622 17 1 4.1704 4.5686 5.4386 18 6 7.3310 0.5031 3.2108 19 6 6.0503 -0.3021 3.4439 20 7 1.6480 2.0990 -1.2496 21 6 0.8029 3.2965 -1.3260 22 6 0.3089 3.3596 -2.7884 23 6 1.4233 2.5867 -3.5312 24 6 2.0156 1.6819 -2.4733 25 8 2.7236 0.7228 -2.6967 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.5804 0.9822 2.0806 32 1 6.0598 0.5589 0.8436 33 1 5.9033 2.3110 1.1160 34 1 7.8377 4.3406 3.5110 35 1 7.9515 0.2273 2.3580 36 1 7.8703 0.8565 4.0897 37 1 5.7473 -0.4780 4.4761 38 1 5.8275 -1.1081 2.7447 39 1 -0.0437 3.2048 -0.6456 40 1 1.3860 4.1857 -1.0861 41 1 -0.6527 2.8582 -2.8973 42 1 0.2511 4.3910 -3.1364 43 1 2.1781 3.2758 -3.9100 44 1 1.0012 1.9969 -4.3449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431149433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -51.191646 kcal Electronic energy + Delta-G solvation = -24691.100143 eV Core-core repulsion = 21222.986956 eV Total energy + Delta-G solvation = -3468.113186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62445 -38.64603 -36.67052 -36.15524 -34.70004 -33.19229 -31.97393 -31.03509 -27.83938 -27.48428 -25.86518 -24.85517 -22.24256 -21.93270 -21.22467 -20.33172 -19.45674 -18.60092 -17.20053 -16.80161 -16.17105 -15.76441 -15.30625 -14.76330 -14.71251 -14.31125 -14.22935 -13.83181 -13.58156 -13.38827 -13.15932 -12.98231 -12.71373 -12.59186 -12.54312 -11.90011 -11.72232 -11.60835 -11.53824 -11.17925 -11.14032 -11.07178 -10.96290 -10.88099 -10.56262 -10.26334 -9.66367 -9.45949 -9.34583 -8.97246 -8.54748 -8.48286 -8.18886 -8.04474 -6.09178 -4.18305 2.80981 2.99585 3.23836 3.28563 3.31894 3.32404 3.92113 4.33917 4.37851 4.40543 4.68682 4.90614 4.95888 5.03934 5.12242 5.19523 5.28405 5.35337 5.36225 5.46638 5.54754 5.57144 5.67353 5.72678 5.85688 5.88617 6.02366 6.04914 6.22025 6.34273 6.48741 6.58077 6.61378 6.70015 6.90322 7.10028 7.29940 7.33124 7.43269 7.49782 7.79593 8.30897 8.32812 8.47121 8.82882 8.94775 9.48936 10.99112 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.004396 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.424690 B = 6368.245854 C = 6833.449582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.144 3.856 4 H 0.107 0.893 5 C 0.492 3.508 6 O -0.528 6.528 7 N -0.704 5.704 8 C 0.166 3.834 9 C 0.026 3.974 10 C -0.497 4.497 11 H 0.060 0.940 12 C 0.073 3.927 13 N -0.874 5.874 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.147 4.147 19 C -0.211 4.211 20 N -0.607 5.607 21 C 0.103 3.897 22 C -0.129 4.129 23 C -0.155 4.155 24 C 0.523 3.477 25 O -0.507 6.507 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.397 0.603 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 -1.400 -7.406 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.037 3.963 4 H 0.125 0.875 5 C 0.274 3.726 6 O -0.404 6.404 7 N -0.353 5.353 8 C 0.043 3.957 9 C 0.025 3.975 10 C -0.535 4.535 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.185 4.185 19 C -0.248 4.248 20 N -0.343 5.343 21 C -0.020 4.020 22 C -0.167 4.167 23 C -0.196 4.196 24 C 0.310 3.690 25 O -0.381 6.381 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.231 0.769 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.189 -1.604 -8.260 17.364 hybrid contribution -0.289 0.824 1.254 1.528 sum -15.478 -0.780 -7.006 17.008 Atomic orbital electron populations 1.21701 0.94961 1.01744 1.01696 1.21842 0.96605 0.94532 1.04309 1.20881 0.93205 0.95234 0.86980 0.87482 1.20658 0.89892 0.78136 0.83874 1.90711 1.64577 1.48468 1.36671 1.45897 1.09717 1.69520 1.10212 1.20967 0.77540 1.00601 0.96554 1.19052 0.97102 0.90029 0.91273 1.20345 1.08289 1.00417 1.24399 0.92232 1.24980 0.95301 0.97468 0.95381 1.70010 1.14752 1.28551 1.37698 0.86647 0.79009 0.80991 0.81677 1.20634 1.21279 1.19867 1.22473 0.90766 1.03622 1.01607 1.23026 1.05304 0.95912 1.00543 1.47913 1.51837 1.29082 1.05457 1.22084 0.94215 0.87974 0.97733 1.22560 0.98378 1.01739 0.94041 1.22323 0.99408 0.99579 0.98247 1.20642 0.79604 0.84816 0.83909 1.90715 1.35656 1.28421 1.83289 0.92494 0.92607 0.92781 0.89853 0.90232 0.76918 0.94740 0.91065 0.92896 0.91720 0.89785 0.90344 0.91635 0.90418 0.91117 0.90146 0.89339 0.88000 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.80 37.16 0.36 -1.04 16 2 C -0.13 -1.73 5.34 -26.73 -0.14 -1.87 16 3 C 0.14 2.09 2.67 -69.08 -0.18 1.90 16 4 H 0.11 1.29 8.07 -51.93 -0.42 0.87 16 5 C 0.49 9.65 6.97 -10.98 -0.08 9.57 16 6 O -0.53 -12.72 14.15 -15.58 -0.22 -12.94 16 7 N -0.70 -13.88 5.46 -60.29 -0.33 -14.21 16 8 C 0.17 3.88 5.51 -4.04 -0.02 3.86 16 9 C 0.03 0.62 1.38 -155.66 -0.22 0.40 16 10 C -0.50 -12.68 8.71 -34.44 -0.30 -12.98 16 11 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 12 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 13 N -0.87 -24.36 12.84 55.43 0.71 -23.65 16 14 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C -0.15 -3.39 9.34 -26.69 -0.25 -3.64 16 19 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 20 N -0.61 -8.33 2.18 -166.16 -0.36 -8.69 16 21 C 0.10 0.97 7.30 -3.12 -0.02 0.94 16 22 C -0.13 -0.94 7.18 -25.10 -0.18 -1.12 16 23 C -0.16 -1.63 6.86 -26.74 -0.18 -1.81 16 24 C 0.52 8.24 6.73 -10.86 -0.07 8.16 16 25 O -0.51 -10.39 14.77 -15.59 -0.23 -10.62 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 29 H 0.08 1.32 6.66 -51.93 -0.35 0.97 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.40 6.94 8.45 -40.82 -0.34 6.60 16 32 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.07 1.92 8.14 -51.93 -0.42 1.49 16 34 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 35 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -33.58 362.55 -9.03 -42.62 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.40 Total: 7.14 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.65 Total: -0.45 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.02 Total: -46.55 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.45 Total: -23.56 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.58 -9.03 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431149433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.574 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds