Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 H 1.09002 * 109.47241 * 55.21892 * 3 2 1 5 5 C 1.50704 * 109.47595 * 175.21920 * 3 2 1 6 6 O 1.21278 * 119.99851 * 102.82848 * 5 3 2 7 7 N 1.34776 * 119.99733 * 282.83764 * 5 3 2 8 8 C 1.46509 * 119.99649 * 184.94246 * 7 5 3 9 9 C 1.52990 * 109.46742 * 175.49070 * 8 7 5 10 10 C 1.50698 * 115.55334 * 294.88633 * 9 8 7 11 11 H 1.08004 * 119.99941 * 94.53385 * 10 9 8 12 12 C 1.37875 * 120.00176 * 274.53669 * 10 9 8 13 13 N 1.31507 * 120.00002 * 4.06581 * 12 10 9 14 14 Si 1.86804 * 119.99835 * 184.06130 * 12 10 9 15 15 H 1.48490 * 109.47336 * 90.00037 * 14 12 10 16 16 H 1.48503 * 109.46973 * 210.00283 * 14 12 10 17 17 H 1.48498 * 109.47229 * 330.00014 * 14 12 10 18 18 C 1.53004 * 117.49919 * 149.22115 * 9 8 7 19 19 C 1.53006 * 117.50196 * 80.56518 * 9 8 7 20 20 N 1.46499 * 109.47224 * 295.21832 * 3 2 1 21 21 C 1.46765 * 124.34649 * 119.99609 * 20 3 2 22 22 C 1.54482 * 105.47218 * 197.04137 * 21 20 3 23 23 C 1.54630 * 101.76433 * 334.58468 * 22 21 20 24 24 C 1.34414 * 124.35239 * 300.02806 * 20 3 2 25 25 O 1.21284 * 124.94092 * 359.29799 * 24 20 3 26 26 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46541 * 299.99620 * 1 2 3 28 28 H 1.08993 * 109.47424 * 59.99717 * 1 2 3 29 29 H 1.08998 * 109.46897 * 239.99895 * 2 1 3 30 30 H 1.09002 * 109.47512 * 120.00496 * 2 1 3 31 31 H 0.96999 * 120.00359 * 4.94303 * 7 5 3 32 32 H 1.09001 * 109.46619 * 295.49327 * 8 7 5 33 33 H 1.09002 * 109.46653 * 55.49166 * 8 7 5 34 34 H 0.97010 * 119.99730 * 185.03996 * 13 12 10 35 35 H 1.09007 * 117.49457 * 0.02562 * 18 9 8 36 36 H 1.09002 * 117.50423 * 145.01563 * 18 9 8 37 37 H 1.09004 * 117.49751 * 214.97804 * 19 9 8 38 38 H 1.09000 * 117.49662 * 359.96815 * 19 9 8 39 39 H 1.08992 * 110.25165 * 316.04024 * 21 20 3 40 40 H 1.09003 * 110.24583 * 78.04587 * 21 20 3 41 41 H 1.08996 * 110.97226 * 92.70587 * 22 21 20 42 42 H 1.09006 * 110.96951 * 216.46943 * 22 21 20 43 43 H 1.09000 * 110.48636 * 266.11693 * 23 22 21 44 44 H 1.09001 * 110.48496 * 143.48070 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6085 1.9804 0.8441 5 6 3.5424 1.4441 0.1184 6 8 4.2276 1.6495 -0.8610 7 7 4.1245 1.2173 1.3127 8 6 5.5790 1.3257 1.4510 9 6 5.9675 1.1324 2.9181 10 6 5.4730 2.1937 3.8667 11 1 4.5480 2.0484 4.4050 12 6 6.2014 3.3503 4.0475 13 7 7.2851 3.5633 3.3336 14 14 5.6488 4.6149 5.3065 15 1 6.2728 4.3118 6.6194 16 1 6.0638 5.9698 4.8622 17 1 4.1704 4.5686 5.4386 18 6 7.3310 0.5031 3.2108 19 6 6.0503 -0.3021 3.4439 20 7 1.6480 2.0990 -1.2496 21 6 0.8029 3.2965 -1.3260 22 6 0.3089 3.3596 -2.7884 23 6 1.4233 2.5867 -3.5312 24 6 2.0156 1.6819 -2.4733 25 8 2.7236 0.7228 -2.6967 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.5804 0.9822 2.0806 32 1 6.0598 0.5589 0.8436 33 1 5.9033 2.3110 1.1160 34 1 7.8377 4.3406 3.5110 35 1 7.9515 0.2273 2.3580 36 1 7.8703 0.8565 4.0897 37 1 5.7473 -0.4780 4.4761 38 1 5.8275 -1.1081 2.7447 39 1 -0.0437 3.2048 -0.6456 40 1 1.3860 4.1857 -1.0861 41 1 -0.6527 2.8582 -2.8973 42 1 0.2511 4.3910 -3.1364 43 1 2.1781 3.2758 -3.9100 44 1 1.0012 1.9969 -4.3449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431149433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -72.245724 kcal Electronic energy + Delta-G solvation = -24692.013116 eV Core-core repulsion = 21222.986956 eV Total energy + Delta-G solvation = -3469.026160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79336 -40.16031 -38.46697 -37.34024 -35.78144 -34.88727 -33.96481 -31.91846 -29.17932 -28.39013 -27.67138 -26.51806 -23.26251 -22.99210 -22.67180 -21.80868 -21.30613 -19.93952 -18.60550 -18.04933 -17.68294 -17.01963 -16.65577 -16.44422 -16.27967 -15.92353 -15.43202 -15.19072 -14.95600 -14.56413 -14.43682 -14.24626 -13.86295 -13.77480 -13.54957 -13.42906 -13.29202 -12.99135 -12.87812 -12.76095 -12.39047 -12.36467 -12.12025 -12.06415 -11.98484 -11.76782 -11.49818 -10.97442 -10.87113 -10.57453 -10.47206 -10.12733 -9.85453 -9.57382 -8.10197 -6.24487 1.43509 1.45004 1.53625 1.57108 1.77007 1.99108 2.41874 2.48600 3.18942 3.42464 3.51412 3.68626 3.84554 3.90072 3.98480 4.09116 4.22568 4.27685 4.38816 4.50963 4.51449 4.62298 4.68941 4.70765 4.71683 4.80672 4.88595 4.96493 4.99801 5.06551 5.11437 5.16106 5.23841 5.25747 5.36427 5.54100 5.56829 5.61062 5.67475 5.77087 6.26398 6.35063 6.73799 6.84179 7.29359 7.42104 7.46156 8.98190 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.004396 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.424690 B = 6368.245854 C = 6833.449582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.142 0.858 5 C 0.484 3.516 6 O -0.579 6.579 7 N -0.696 5.696 8 C 0.184 3.816 9 C 0.005 3.995 10 C -0.499 4.499 11 H 0.068 0.932 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.952 3.048 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.259 1.259 18 C -0.160 4.160 19 C -0.174 4.174 20 N -0.609 5.609 21 C 0.092 3.908 22 C -0.112 4.112 23 C -0.152 4.152 24 C 0.503 3.497 25 O -0.570 6.570 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.973 -0.923 -6.263 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.041 3.959 4 H 0.159 0.841 5 C 0.269 3.731 6 O -0.459 6.459 7 N -0.347 5.347 8 C 0.059 3.941 9 C 0.004 3.996 10 C -0.536 4.536 11 H 0.087 0.913 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.778 3.222 15 H -0.203 1.203 16 H -0.221 1.221 17 H -0.183 1.183 18 C -0.199 4.199 19 C -0.211 4.211 20 N -0.343 5.343 21 C -0.029 4.029 22 C -0.149 4.149 23 C -0.192 4.192 24 C 0.292 3.708 25 O -0.448 6.448 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.247 0.753 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.994 -1.111 -7.077 20.300 hybrid contribution 0.917 0.652 0.873 1.424 sum -18.077 -0.458 -6.204 19.117 Atomic orbital electron populations 1.21648 0.91864 1.02766 1.02861 1.21803 0.99118 0.92886 1.02904 1.20965 0.88992 0.97149 0.88803 0.84077 1.21750 0.92329 0.76311 0.82698 1.90688 1.66391 1.50504 1.38285 1.45765 1.08310 1.69481 1.11114 1.20490 0.79791 0.97520 0.96263 1.19078 0.97716 0.91765 0.90995 1.20673 1.08322 1.00618 1.24021 0.91348 1.25756 0.95415 0.99507 0.97224 1.70157 1.16171 1.29179 1.39454 0.85645 0.79291 0.78045 0.79227 1.20304 1.22097 1.18260 1.22409 0.91269 1.05141 1.01044 1.23012 1.02098 0.94521 1.01475 1.48172 1.51602 1.29937 1.04586 1.22463 0.94455 0.85800 1.00159 1.22612 0.97760 1.02947 0.91583 1.22369 1.00397 0.99020 0.97443 1.21657 0.78861 0.84571 0.85712 1.90669 1.38444 1.31253 1.84456 0.91646 0.90265 0.92648 0.93481 0.89497 0.75308 0.95891 0.95646 0.93335 0.91710 0.91563 0.89035 0.89635 0.87126 0.91639 0.87789 0.86758 0.88244 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.80 71.98 0.71 -1.48 16 2 C -0.13 -3.15 5.34 30.59 0.16 -2.99 16 3 C 0.15 4.10 2.67 44.25 0.12 4.22 16 4 H 0.14 2.92 8.07 -2.39 -0.02 2.90 16 5 C 0.48 19.34 6.97 87.66 0.61 19.95 16 6 O -0.58 -29.36 14.15 17.19 0.24 -29.12 16 7 N -0.70 -27.61 5.46 -463.05 -2.53 -30.14 16 8 C 0.18 8.87 5.51 86.37 0.48 9.35 16 9 C 0.01 0.25 1.38 -52.93 -0.07 0.17 16 10 C -0.50 -25.18 8.71 25.60 0.22 -24.95 16 11 H 0.07 3.27 7.82 -2.91 -0.02 3.24 16 12 C 0.02 1.12 5.40 84.66 0.46 1.58 16 13 N -0.91 -52.19 12.84 21.45 0.28 -51.91 16 14 Si 0.95 41.53 29.54 68.60 2.03 43.56 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 18 C -0.16 -7.51 9.34 30.62 0.29 -7.22 16 19 C -0.17 -6.99 9.96 30.62 0.30 -6.69 16 20 N -0.61 -15.93 2.18 -798.21 -1.74 -17.68 16 21 C 0.09 1.44 7.30 86.83 0.63 2.07 16 22 C -0.11 -1.20 7.18 31.65 0.23 -0.97 16 23 C -0.15 -2.99 6.86 30.59 0.21 -2.78 16 24 C 0.50 15.96 6.73 87.90 0.59 16.55 16 25 O -0.57 -24.62 14.77 17.17 0.25 -24.37 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.90 7.75 -2.39 -0.02 0.88 16 29 H 0.05 1.52 6.66 -2.39 -0.02 1.50 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.41 13.84 8.45 -92.71 -0.78 13.06 16 32 H 0.02 1.13 8.09 -2.39 -0.02 1.12 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.26 14.24 8.32 -92.70 -0.77 13.47 16 35 H 0.06 2.97 8.14 -2.38 -0.02 2.95 16 36 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -78.47 362.55 3.66 -74.81 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.20 Total: 28.04 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 4.93 Total: 6.80 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -3.99 Total: -99.72 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: 0.50 Total: -53.48 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -78.47 3.66 -74.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431149433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -78.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds