Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99973 * 2 1 4 4 N 1.46896 * 109.47116 * 124.21143 * 3 2 1 5 5 C 1.46901 * 111.00149 * 302.10504 * 4 3 2 6 6 C 1.50701 * 109.47048 * 288.76006 * 5 4 3 7 7 H 1.08003 * 120.00219 * 358.65271 * 6 5 4 8 8 C 1.37879 * 120.00487 * 178.65072 * 6 5 4 9 9 N 1.31518 * 119.99490 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00346 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47426 * 59.99959 * 10 8 6 12 12 H 1.48503 * 109.47134 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.46887 * 299.99709 * 10 8 6 14 14 C 1.46903 * 111.00297 * 66.05793 * 4 3 2 15 15 N 1.46507 * 109.47106 * 81.04684 * 14 4 3 16 16 C 1.47320 * 125.58170 * 89.99817 * 15 14 4 17 17 C 1.53327 * 103.42665 * 179.73326 * 16 15 14 18 18 C 1.53486 * 110.80106 * 239.85780 * 17 16 15 19 19 C 1.55069 * 103.99428 * 215.46093 * 18 17 16 20 20 C 1.54960 * 102.85145 * 37.26168 * 19 18 17 21 21 C 1.53088 * 111.03165 * 120.56023 * 17 16 15 22 22 O 1.44856 * 104.84098 * 0.02562 * 17 16 15 23 23 C 1.34065 * 109.10792 * 359.97438 * 22 17 16 24 24 O 1.21508 * 123.10578 * 179.97438 * 23 22 17 25 25 H 1.07999 * 120.00002 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00100 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00002 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47166 * 4.20913 * 3 2 1 29 29 H 1.09004 * 109.46620 * 244.21058 * 3 2 1 30 30 H 1.08996 * 109.47195 * 48.75327 * 5 4 3 31 31 H 1.09000 * 109.47469 * 168.75904 * 5 4 3 32 32 H 0.96994 * 119.99865 * 180.02562 * 9 8 6 33 33 H 1.08990 * 109.47000 * 321.04684 * 14 4 3 34 34 H 1.09000 * 109.46721 * 201.04560 * 14 4 3 35 35 H 1.09002 * 110.63460 * 298.21411 * 16 15 14 36 36 H 1.08996 * 110.63388 * 61.24867 * 16 15 14 37 37 H 1.08998 * 110.52182 * 334.08768 * 18 17 16 38 38 H 1.08998 * 110.52345 * 96.83472 * 18 17 16 39 39 H 1.08998 * 110.74240 * 278.92217 * 19 18 17 40 40 H 1.08999 * 110.73945 * 155.60271 * 19 18 17 41 41 H 1.09002 * 110.48167 * 203.81200 * 20 19 18 42 42 H 1.08995 * 110.48343 * 81.17956 * 20 19 18 43 43 H 1.08995 * 110.09725 * 240.27817 * 21 17 16 44 44 H 1.08998 * 110.08951 * 1.87168 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9826 1.3398 1.1453 5 6 2.2548 1.1692 2.4099 6 6 1.4529 2.4118 2.6995 7 1 1.4981 3.2534 2.0241 8 6 0.6615 2.4745 3.8268 9 7 0.6068 1.4499 4.6496 10 14 -0.3330 4.0145 4.1855 11 1 -1.2793 4.2640 3.0685 12 1 -1.0937 3.8298 5.4474 13 1 0.5838 5.1742 4.3260 14 6 4.0378 0.3275 1.0045 15 7 5.0857 0.8347 0.1152 16 6 6.2726 1.5985 0.5373 17 6 7.0150 1.8588 -0.7787 18 6 8.4222 1.2471 -0.7410 19 6 9.2895 2.2517 -1.5429 20 6 8.6931 3.6230 -1.1365 21 6 7.1744 3.3602 -1.0319 22 8 6.1964 1.2328 -1.7967 23 6 5.1244 0.6751 -1.2161 24 8 4.2667 0.0805 -1.8384 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3576 2.1322 0.0754 29 1 2.6323 1.3962 -0.9254 30 1 1.5836 0.3141 2.3302 31 1 2.9659 0.9990 3.2183 32 1 0.0497 1.4938 5.4424 33 1 3.6132 -0.5836 0.5831 34 1 4.4656 0.1101 1.9832 35 1 5.9785 2.5383 1.0046 36 1 6.8885 1.0075 1.2152 37 1 8.7780 1.1701 0.2864 38 1 8.4267 0.2691 -1.2224 39 1 9.1807 2.0860 -2.6147 40 1 10.3357 2.1823 -1.2449 41 1 8.8989 4.3706 -1.9026 42 1 9.0922 3.9422 -0.1738 43 1 6.6814 3.6373 -1.9636 44 1 6.7528 3.9267 -0.2016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496009741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = -41.509941 kcal Electronic energy + Delta-G solvation = -24765.038075 eV Core-core repulsion = 21297.344718 eV Total energy + Delta-G solvation = -3467.693356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70432 -38.31930 -37.26593 -35.90272 -34.67188 -32.80392 -31.77738 -29.59323 -29.17846 -27.37548 -26.26322 -24.77282 -23.67437 -21.74050 -21.15064 -20.93095 -20.21192 -18.70106 -16.91138 -16.62295 -16.57487 -16.18377 -15.72680 -15.21712 -14.82074 -14.63931 -14.31281 -14.21058 -14.04678 -13.63449 -13.30963 -13.16493 -12.49432 -12.41463 -12.17169 -12.01484 -11.63073 -11.44265 -11.42351 -11.22774 -11.12644 -10.99683 -10.85017 -10.75859 -10.67147 -10.51387 -10.40438 -10.19677 -9.99671 -9.39144 -8.75112 -8.62222 -8.41779 -7.38487 -6.04374 -4.05293 2.69736 2.98547 3.04157 3.31964 3.36234 3.39059 3.51773 4.04851 4.12986 4.30053 4.41384 4.77525 4.91369 4.97048 5.09497 5.10701 5.28945 5.30330 5.31662 5.41497 5.53290 5.57399 5.63197 5.65113 5.68062 5.75313 5.78071 5.89128 5.92165 6.03194 6.09533 6.23605 6.51492 6.65971 6.72997 7.11310 7.26160 7.34595 7.47413 7.62232 7.76039 7.99229 8.12026 8.32278 8.48628 9.00969 9.58483 11.06105 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.004267 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.765105 B = 6559.717934 C = 7436.435355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.091 3.909 4 N -0.545 5.545 5 C 0.196 3.804 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.301 3.699 15 N -0.613 5.613 16 C 0.080 3.920 17 C 0.091 3.909 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.127 4.127 22 O -0.323 6.323 23 C 0.639 3.361 24 O -0.525 6.525 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.008 0.992 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 0.821 -8.429 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C -0.036 4.036 4 N -0.270 5.270 5 C 0.071 3.929 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.091 3.909 15 N -0.361 5.361 16 C -0.044 4.044 17 C 0.053 3.947 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.164 4.164 22 O -0.234 6.234 23 C 0.393 3.607 24 O -0.410 6.410 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.135 0.919 -8.769 18.387 hybrid contribution -1.063 0.026 0.508 1.178 sum 15.073 0.945 -8.261 17.214 Atomic orbital electron populations 1.23643 0.95955 1.01022 1.01369 1.23401 0.96569 0.99554 0.99404 1.21250 0.94646 0.94428 0.93302 1.62100 1.13168 1.46806 1.04919 1.19757 0.92399 0.97398 0.83349 1.21030 1.25213 1.00377 1.07504 0.92112 1.24938 0.96886 0.96390 0.96145 1.69937 1.40222 1.30148 1.13467 0.86592 0.80154 0.83360 0.77478 1.20291 1.21389 1.20270 1.21783 0.85261 0.91797 0.92107 1.48447 1.24320 1.56892 1.06422 1.22970 0.86734 0.98816 0.95862 1.23212 0.91544 0.94458 0.85465 1.22630 0.91774 0.99845 1.01917 1.22547 0.98917 0.94251 1.00386 1.22401 0.94145 0.97494 1.01943 1.22450 0.97723 0.92085 1.04165 1.87264 1.34321 1.67515 1.34271 1.18675 0.81275 0.78797 0.82001 1.91020 1.37687 1.45228 1.67075 0.88599 0.89675 0.88671 0.90117 0.91382 0.97408 0.95605 0.92895 0.91874 0.89100 0.88406 0.89364 0.89296 0.90061 0.90997 0.90979 0.91052 0.90977 0.89811 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 14.32 29.02 0.42 -3.07 16 2 C -0.17 -3.40 7.35 -36.02 -0.26 -3.67 16 3 C 0.09 1.91 5.59 -4.98 -0.03 1.88 16 4 N -0.55 -11.46 4.76 -241.43 -1.15 -12.61 16 5 C 0.20 4.84 4.55 -4.98 -0.02 4.82 16 6 C -0.50 -13.66 8.59 -34.44 -0.30 -13.96 16 7 H 0.06 1.66 7.50 -52.48 -0.39 1.27 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 10 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.30 5.35 5.72 -63.31 -0.36 4.99 16 15 N -0.61 -9.76 3.18 -182.52 -0.58 -10.34 16 16 C 0.08 0.95 6.98 -3.42 -0.02 0.92 16 17 C 0.09 1.01 1.35 -90.15 -0.12 0.88 16 18 C -0.12 -1.03 6.09 -25.39 -0.15 -1.18 16 19 C -0.12 -0.88 6.92 -24.60 -0.17 -1.05 16 20 C -0.12 -0.86 6.85 -24.92 -0.17 -1.04 16 21 C -0.13 -1.20 6.33 -25.91 -0.16 -1.36 16 22 O -0.32 -4.94 10.45 -38.58 -0.40 -5.35 16 23 C 0.64 11.34 8.20 53.77 0.44 11.78 16 24 O -0.53 -11.07 16.07 -19.09 -0.31 -11.38 16 25 H 0.10 1.85 7.84 -52.49 -0.41 1.44 16 26 H 0.08 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.10 1.86 6.76 -52.49 -0.35 1.51 16 28 H 0.08 1.79 6.96 -51.93 -0.36 1.43 16 29 H 0.07 1.44 5.80 -51.93 -0.30 1.14 16 30 H 0.01 0.22 6.65 -51.93 -0.35 -0.13 16 31 H 0.03 0.67 7.66 -51.93 -0.40 0.27 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.06 1.17 5.91 -51.93 -0.31 0.86 16 34 H 0.09 1.49 7.56 -51.93 -0.39 1.10 16 35 H 0.10 1.17 7.17 -51.93 -0.37 0.80 16 36 H 0.09 0.84 7.40 -51.93 -0.38 0.45 16 37 H 0.09 0.58 7.53 -51.93 -0.39 0.19 16 38 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.88 8.00 -51.93 -0.42 0.47 16 44 H 0.09 0.79 7.15 -51.93 -0.37 0.42 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -31.58 349.77 -9.34 -40.92 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.87 Total: 0.95 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.02 Total: 1.45 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.99 Total: -48.19 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.71 Total: -16.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.58 -9.34 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496009741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.588 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds