Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99973 * 2 1 4 4 N 1.46896 * 109.47116 * 124.21143 * 3 2 1 5 5 C 1.46901 * 111.00149 * 302.10504 * 4 3 2 6 6 C 1.50701 * 109.47048 * 288.76006 * 5 4 3 7 7 H 1.08003 * 120.00219 * 358.65271 * 6 5 4 8 8 C 1.37879 * 120.00487 * 178.65072 * 6 5 4 9 9 N 1.31518 * 119.99490 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00346 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47426 * 59.99959 * 10 8 6 12 12 H 1.48503 * 109.47134 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.46887 * 299.99709 * 10 8 6 14 14 C 1.46903 * 111.00297 * 66.05793 * 4 3 2 15 15 N 1.46507 * 109.47106 * 81.04684 * 14 4 3 16 16 C 1.47320 * 125.58170 * 89.99817 * 15 14 4 17 17 C 1.53327 * 103.42665 * 179.73326 * 16 15 14 18 18 C 1.53486 * 110.80106 * 239.85780 * 17 16 15 19 19 C 1.55069 * 103.99428 * 215.46093 * 18 17 16 20 20 C 1.54960 * 102.85145 * 37.26168 * 19 18 17 21 21 C 1.53088 * 111.03165 * 120.56023 * 17 16 15 22 22 O 1.44856 * 104.84098 * 0.02562 * 17 16 15 23 23 C 1.34065 * 109.10792 * 359.97438 * 22 17 16 24 24 O 1.21508 * 123.10578 * 179.97438 * 23 22 17 25 25 H 1.07999 * 120.00002 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00100 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00002 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47166 * 4.20913 * 3 2 1 29 29 H 1.09004 * 109.46620 * 244.21058 * 3 2 1 30 30 H 1.08996 * 109.47195 * 48.75327 * 5 4 3 31 31 H 1.09000 * 109.47469 * 168.75904 * 5 4 3 32 32 H 0.96994 * 119.99865 * 180.02562 * 9 8 6 33 33 H 1.08990 * 109.47000 * 321.04684 * 14 4 3 34 34 H 1.09000 * 109.46721 * 201.04560 * 14 4 3 35 35 H 1.09002 * 110.63460 * 298.21411 * 16 15 14 36 36 H 1.08996 * 110.63388 * 61.24867 * 16 15 14 37 37 H 1.08998 * 110.52182 * 334.08768 * 18 17 16 38 38 H 1.08998 * 110.52345 * 96.83472 * 18 17 16 39 39 H 1.08998 * 110.74240 * 278.92217 * 19 18 17 40 40 H 1.08999 * 110.73945 * 155.60271 * 19 18 17 41 41 H 1.09002 * 110.48167 * 203.81200 * 20 19 18 42 42 H 1.08995 * 110.48343 * 81.17956 * 20 19 18 43 43 H 1.08995 * 110.09725 * 240.27817 * 21 17 16 44 44 H 1.08998 * 110.08951 * 1.87168 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9826 1.3398 1.1453 5 6 2.2548 1.1692 2.4099 6 6 1.4529 2.4118 2.6995 7 1 1.4981 3.2534 2.0241 8 6 0.6615 2.4745 3.8268 9 7 0.6068 1.4499 4.6496 10 14 -0.3330 4.0145 4.1855 11 1 -1.2793 4.2640 3.0685 12 1 -1.0937 3.8298 5.4474 13 1 0.5838 5.1742 4.3260 14 6 4.0378 0.3275 1.0045 15 7 5.0857 0.8347 0.1152 16 6 6.2726 1.5985 0.5373 17 6 7.0150 1.8588 -0.7787 18 6 8.4222 1.2471 -0.7410 19 6 9.2895 2.2517 -1.5429 20 6 8.6931 3.6230 -1.1365 21 6 7.1744 3.3602 -1.0319 22 8 6.1964 1.2328 -1.7967 23 6 5.1244 0.6751 -1.2161 24 8 4.2667 0.0805 -1.8384 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3576 2.1322 0.0754 29 1 2.6323 1.3962 -0.9254 30 1 1.5836 0.3141 2.3302 31 1 2.9659 0.9990 3.2183 32 1 0.0497 1.4938 5.4424 33 1 3.6132 -0.5836 0.5831 34 1 4.4656 0.1101 1.9832 35 1 5.9785 2.5383 1.0046 36 1 6.8885 1.0075 1.2152 37 1 8.7780 1.1701 0.2864 38 1 8.4267 0.2691 -1.2224 39 1 9.1807 2.0860 -2.6147 40 1 10.3357 2.1823 -1.2449 41 1 8.8989 4.3706 -1.9026 42 1 9.0922 3.9422 -0.1738 43 1 6.6814 3.6373 -1.9636 44 1 6.7528 3.9267 -0.2016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496009741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = -61.055727 kcal Electronic energy + Delta-G solvation = -24765.885643 eV Core-core repulsion = 21297.344718 eV Total energy + Delta-G solvation = -3468.540925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.86280 -39.57565 -38.75421 -36.99083 -36.02895 -34.80316 -33.44026 -30.62772 -29.84540 -29.19667 -27.79964 -26.02938 -25.24143 -23.10945 -22.59056 -21.69937 -21.42703 -20.21060 -18.44389 -18.05830 -17.83594 -17.58614 -16.99469 -16.71415 -16.19394 -16.02716 -15.82883 -15.50275 -15.34313 -14.82432 -14.43202 -14.18451 -14.08959 -14.00479 -13.50547 -13.23258 -12.96238 -12.81944 -12.72796 -12.61563 -12.39883 -12.24069 -12.08512 -12.05247 -11.99926 -11.97191 -11.63907 -11.51806 -11.37775 -11.35508 -10.57435 -10.21761 -10.06702 -9.12584 -8.15439 -6.23491 1.36060 1.43356 1.44427 1.46674 1.52568 1.66441 2.41502 2.47050 3.17530 3.18261 3.32511 3.42419 3.48475 3.78219 4.02243 4.16275 4.22107 4.28048 4.31664 4.41157 4.45848 4.50127 4.58740 4.66164 4.74257 4.77822 4.89739 4.92290 5.01948 5.04220 5.11802 5.18334 5.22701 5.24020 5.28022 5.40693 5.47442 5.67107 5.69416 5.85754 6.05127 6.22948 6.42402 6.53057 6.88497 6.96857 7.44816 8.94305 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.004267 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.765105 B = 6559.717934 C = 7436.435355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.184 4.184 3 C 0.101 3.899 4 N -0.547 5.547 5 C 0.213 3.787 6 C -0.515 4.515 7 H 0.054 0.946 8 C 0.012 3.988 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.305 3.695 15 N -0.611 5.611 16 C 0.076 3.924 17 C 0.084 3.916 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.129 4.129 22 O -0.333 6.333 23 C 0.637 3.363 24 O -0.568 6.568 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.064 0.936 30 H -0.014 1.014 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.965 1.753 -7.856 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.203 4.203 3 C -0.027 4.027 4 N -0.272 5.272 5 C 0.088 3.912 6 C -0.554 4.554 7 H 0.072 0.928 8 C -0.187 4.187 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.094 3.906 15 N -0.358 5.358 16 C -0.046 4.046 17 C 0.047 3.953 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.167 4.167 22 O -0.243 6.243 23 C 0.391 3.609 24 O -0.456 6.456 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.004 0.996 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.769 1.876 -8.205 19.662 hybrid contribution -1.494 -0.253 0.295 1.543 sum 16.275 1.624 -7.910 18.168 Atomic orbital electron populations 1.23829 0.95762 1.01928 0.99947 1.23389 0.96997 0.99235 1.00694 1.21067 0.94322 0.94359 0.92945 1.62021 1.13329 1.48281 1.03555 1.19383 0.91662 0.95649 0.84544 1.21285 1.25678 1.00934 1.07473 0.92782 1.25691 0.97841 0.99218 0.95946 1.70042 1.41024 1.31954 1.13915 0.85611 0.78768 0.79951 0.77323 1.19924 1.20946 1.19420 1.21713 0.84912 0.90766 0.93165 1.48356 1.24812 1.56864 1.05761 1.23323 0.85519 0.98886 0.96865 1.23688 0.92227 0.95496 0.83853 1.22703 0.89924 0.99493 1.03684 1.22557 0.99956 0.93682 0.99619 1.22404 0.91933 0.97714 1.03199 1.22506 0.99766 0.90977 1.03439 1.87256 1.33984 1.67411 1.35686 1.18810 0.81361 0.78470 0.82289 1.90971 1.39466 1.47135 1.68050 0.89026 0.87424 0.88258 0.91902 0.91821 0.99627 0.96800 0.92793 0.92661 0.87373 0.88344 0.86227 0.86664 0.90870 0.92086 0.88705 0.90382 0.89190 0.91456 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.76 14.32 67.79 0.97 -5.79 16 2 C -0.18 -7.46 7.35 25.65 0.19 -7.27 16 3 C 0.10 4.31 5.59 85.56 0.48 4.79 16 4 N -0.55 -23.21 4.76 -917.75 -4.37 -27.58 16 5 C 0.21 10.68 4.55 85.56 0.39 11.07 16 6 C -0.52 -28.13 8.59 25.60 0.22 -27.91 16 7 H 0.05 2.97 7.50 -2.91 -0.02 2.95 16 8 C 0.01 0.63 5.46 84.65 0.46 1.10 16 9 N -0.93 -53.74 13.29 21.45 0.28 -53.45 16 10 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.30 10.81 5.72 170.80 0.98 11.79 16 15 N -0.61 -19.16 3.18 -962.78 -3.06 -22.22 16 16 C 0.08 1.67 6.98 86.33 0.60 2.27 16 17 C 0.08 1.73 1.35 -10.49 -0.01 1.72 16 18 C -0.12 -1.68 6.09 31.47 0.19 -1.49 16 19 C -0.12 -1.37 6.92 31.97 0.22 -1.15 16 20 C -0.12 -1.31 6.85 31.77 0.22 -1.09 16 21 C -0.13 -2.26 6.33 31.13 0.20 -2.06 16 22 O -0.33 -10.16 10.45 -50.07 -0.52 -10.68 16 23 C 0.64 22.79 8.20 129.89 1.06 23.86 16 24 O -0.57 -24.62 16.07 19.64 0.32 -24.31 16 25 H 0.09 3.56 7.84 -2.91 -0.02 3.54 16 26 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 27 H 0.10 3.94 6.76 -2.91 -0.02 3.92 16 28 H 0.06 2.86 6.96 -2.39 -0.02 2.85 16 29 H 0.06 2.78 5.80 -2.38 -0.01 2.76 16 30 H -0.01 -0.76 6.65 -2.39 -0.02 -0.78 16 31 H 0.01 0.73 7.66 -2.39 -0.02 0.71 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.06 2.07 5.91 -2.39 -0.01 2.05 16 34 H 0.11 3.45 7.56 -2.39 -0.02 3.43 16 35 H 0.10 2.18 7.17 -2.39 -0.02 2.16 16 36 H 0.12 1.88 7.40 -2.39 -0.02 1.86 16 37 H 0.12 1.03 7.53 -2.39 -0.02 1.01 16 38 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16 44 H 0.09 1.50 7.15 -2.39 -0.02 1.49 16 Total: -1.00 -68.49 349.77 1.82 -66.67 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.98 Total: 16.31 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.16 Total: 9.81 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -7.15 Total: -103.25 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.21 Total: -34.99 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.49 1.82 -66.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496009741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.613 kcal (2) G-P(sol) polarization free energy of solvation -68.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds