Wall clock time and date at job start Tue Mar 31 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47295 * 2 1 4 4 N 1.46502 * 109.47058 * 119.99961 * 2 1 3 5 5 C 1.46499 * 120.00070 * 115.64256 * 4 2 1 6 6 C 1.50695 * 109.47119 * 84.41022 * 5 4 2 7 7 H 1.08004 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00282 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99726 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00345 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46824 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46920 * 120.00002 * 10 8 6 13 13 H 1.48496 * 109.47316 * 240.00305 * 10 8 6 14 14 C 1.34777 * 120.00004 * 295.91970 * 4 2 1 15 15 O 1.21283 * 120.00048 * 5.12013 * 14 4 2 16 16 C 1.50704 * 120.00337 * 185.11928 * 14 4 2 17 17 H 1.09007 * 110.85117 * 317.19112 * 16 14 4 18 18 C 1.54627 * 110.96768 * 80.97843 * 16 14 4 19 19 C 1.51375 * 104.14649 * 93.33468 * 18 16 14 20 20 O 1.21280 * 124.93641 * 196.28734 * 19 18 16 21 21 N 1.34425 * 110.12446 * 16.25593 * 19 18 16 22 22 C 1.46501 * 124.34581 * 180.42180 * 21 19 18 23 23 C 1.52998 * 117.50374 * 8.72301 * 22 21 19 24 24 C 1.52995 * 117.49919 * 300.05958 * 22 21 19 25 25 C 1.46762 * 111.29920 * 0.40273 * 21 19 18 26 26 H 1.08996 * 109.47440 * 295.14444 * 1 2 3 27 27 H 1.08997 * 109.46925 * 55.15213 * 1 2 3 28 28 H 1.09004 * 109.46925 * 175.14602 * 1 2 3 29 29 H 1.08998 * 109.47090 * 239.99272 * 2 1 3 30 30 H 1.09002 * 109.47657 * 184.67206 * 3 2 1 31 31 H 1.08998 * 109.47000 * 304.67398 * 3 2 1 32 32 H 1.09002 * 109.47437 * 64.67358 * 3 2 1 33 33 H 1.09006 * 109.47022 * 204.40513 * 5 4 2 34 34 H 1.08998 * 109.47371 * 324.40485 * 5 4 2 35 35 H 0.97005 * 119.99646 * 180.02562 * 9 8 6 36 36 H 1.08996 * 110.48166 * 212.00236 * 18 16 14 37 37 H 1.09004 * 110.48562 * 334.64293 * 18 16 14 38 38 H 1.09001 * 115.54804 * 154.39751 * 22 21 19 39 39 H 1.09003 * 117.49714 * 0.02562 * 23 22 21 40 40 H 1.08999 * 117.49917 * 145.01660 * 23 22 21 41 41 H 1.09001 * 117.49892 * 214.97964 * 24 22 21 42 42 H 1.09003 * 117.50248 * 0.02562 * 24 22 21 43 43 H 1.08997 * 110.24480 * 223.97967 * 25 21 19 44 44 H 1.09001 * 110.31673 * 102.02399 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7801 -1.9349 1.0639 6 6 4.2315 -1.6117 0.8189 7 1 4.5541 -0.5824 0.7664 8 6 5.1476 -2.6301 0.6616 9 7 4.7546 -3.8836 0.7249 10 14 6.9465 -2.2295 0.3571 11 1 7.1276 -0.7558 0.3297 12 1 7.7738 -2.8093 1.4455 13 1 7.3682 -2.8048 -0.9453 14 6 1.7619 -0.1842 2.4186 15 8 1.0495 0.7906 2.5339 16 6 2.3604 -0.8290 3.6422 17 1 2.2959 -1.9154 3.5791 18 6 3.8232 -0.3725 3.8488 19 6 3.7127 0.8100 4.7873 20 8 4.5880 1.6267 4.9815 21 7 2.5031 0.8237 5.3736 22 6 2.0610 1.8390 6.3328 23 6 2.9594 3.0613 6.5323 24 6 2.8690 1.9911 7.6231 25 6 1.6823 -0.3087 4.9289 26 1 -0.3634 0.4366 0.9302 27 1 -0.3633 0.5872 -0.8434 28 1 -0.3633 -1.0240 -0.0870 29 1 1.8933 -0.5139 -0.8899 30 1 3.1268 1.4436 -0.0837 31 1 1.6099 1.9798 -0.8451 32 1 1.7467 1.9315 0.9289 33 1 2.6874 -2.5170 1.9809 34 1 2.3900 -2.5126 0.2260 35 1 5.3992 -4.6001 0.6147 36 1 4.4104 -1.1690 4.3057 37 1 4.2653 -0.0676 2.9002 38 1 0.9834 1.9912 6.3929 39 1 3.8792 3.1103 5.9495 40 1 2.4728 4.0176 6.7239 41 1 2.3229 2.2440 8.5319 42 1 3.7297 1.3362 7.7582 43 1 0.6670 0.0234 4.7125 44 1 1.6693 -1.0887 5.6903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522590739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:22 Heat of formation + Delta-G solvation = -36.931602 kcal Electronic energy + Delta-G solvation = -25396.766914 eV Core-core repulsion = 21929.272089 eV Total energy + Delta-G solvation = -3467.494825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71296 -39.13436 -36.40567 -36.06855 -35.15517 -33.22615 -31.83710 -30.24247 -27.43308 -27.00640 -26.66187 -23.83138 -22.83318 -22.60797 -22.23230 -20.86077 -18.89696 -18.22193 -16.87584 -16.64558 -16.45915 -15.58818 -15.30641 -14.89986 -14.52015 -14.31287 -14.27246 -13.62891 -13.51951 -13.03939 -13.00017 -12.91435 -12.63684 -12.36885 -12.11400 -11.77165 -11.52337 -11.47940 -11.39885 -11.29648 -11.07384 -10.99372 -10.91316 -10.87631 -10.69404 -10.40990 -10.32932 -10.06891 -9.71370 -9.17933 -8.85946 -8.59016 -8.28706 -7.77156 -6.24119 -4.31102 2.84932 3.10034 3.19831 3.22986 3.29788 3.35647 3.77707 3.96795 4.29747 4.64905 4.74903 4.92590 5.02181 5.07715 5.09656 5.13765 5.30529 5.47473 5.61097 5.66902 5.68853 5.71717 5.78218 5.85109 5.93327 6.06223 6.08724 6.15577 6.18949 6.32895 6.37252 6.41359 6.45054 6.72255 6.75412 6.80808 6.89579 7.11959 7.36311 7.52165 7.70564 7.98188 8.29517 8.48107 8.73347 8.93086 9.37472 10.82297 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.006225 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.507401 B = 4497.000818 C = 5713.364290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.586 5.586 5 C 0.234 3.766 6 C -0.535 4.535 7 H 0.063 0.937 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.890 3.110 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.523 3.477 15 O -0.561 6.561 16 C -0.119 4.119 17 H 0.123 0.877 18 C -0.133 4.133 19 C 0.521 3.479 20 O -0.536 6.536 21 N -0.586 5.586 22 C 0.089 3.911 23 C -0.192 4.192 24 C -0.194 4.194 25 C 0.123 3.877 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 4.939 7.042 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 C -0.224 4.224 4 N -0.316 5.316 5 C 0.114 3.886 6 C -0.573 4.573 7 H 0.081 0.919 8 C -0.135 4.135 9 N -0.528 5.528 10 Si 0.718 3.282 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.310 3.690 15 O -0.442 6.442 16 C -0.140 4.140 17 H 0.141 0.859 18 C -0.173 4.173 19 C 0.310 3.690 20 O -0.414 6.414 21 N -0.318 5.318 22 C -0.016 4.016 23 C -0.229 4.229 24 C -0.233 4.233 25 C 0.000 4.000 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.227 5.691 7.181 11.669 hybrid contribution 1.089 -0.187 -0.309 1.148 sum -6.137 5.504 6.872 10.732 Atomic orbital electron populations 1.22194 0.96081 1.01252 1.02782 1.20821 0.93202 0.93153 0.88270 1.22161 1.01145 0.96426 1.02702 1.48281 1.52788 1.26357 1.04183 1.19533 0.90600 0.79967 0.98464 1.21478 0.92242 0.93276 1.50307 0.91915 1.24901 0.99036 0.94822 0.94765 1.69922 1.34922 0.98711 1.49271 0.86549 0.84768 0.78900 0.78021 1.19507 1.20743 1.20890 1.20003 0.80507 0.83813 0.84628 1.90553 1.39310 1.27739 1.86614 1.22254 0.95799 1.03083 0.92905 0.85911 1.22310 0.96103 0.97025 1.01858 1.21179 0.81048 0.86397 0.80365 1.90551 1.42979 1.42616 1.65245 1.47530 1.15454 1.26010 1.42795 1.21408 0.96510 0.92159 0.91474 1.23720 1.04121 0.92668 1.02420 1.23352 1.03326 1.03564 0.93074 1.21971 0.96010 0.87633 0.94392 0.90829 0.92749 0.93221 0.89687 0.92677 0.92927 0.90679 0.94146 0.94723 0.92550 0.87024 0.85960 0.85669 0.85124 0.88877 0.88551 0.88871 0.89311 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.24 37.16 0.34 -2.24 16 2 C 0.15 2.65 3.27 -67.93 -0.22 2.43 16 3 C -0.17 -2.90 9.13 37.15 0.34 -2.56 16 4 N -0.59 -11.30 2.41 -167.47 -0.40 -11.70 16 5 C 0.23 5.06 4.94 -5.20 -0.03 5.04 16 6 C -0.53 -12.82 8.05 -34.44 -0.28 -13.10 16 7 H 0.06 1.56 7.44 -52.48 -0.39 1.17 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -23.19 13.29 55.43 0.74 -22.45 16 10 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.52 9.73 6.23 -10.98 -0.07 9.66 16 15 O -0.56 -11.13 11.92 5.55 0.07 -11.07 16 16 C -0.12 -1.92 2.67 -90.14 -0.24 -2.16 16 17 H 0.12 1.87 6.37 -51.92 -0.33 1.54 16 18 C -0.13 -2.34 6.16 -26.70 -0.16 -2.50 16 19 C 0.52 9.52 7.88 -10.81 -0.09 9.44 16 20 O -0.54 -11.17 14.69 5.56 0.08 -11.09 16 21 N -0.59 -9.12 3.27 -164.81 -0.54 -9.66 16 22 C 0.09 1.20 6.88 -67.93 -0.47 0.73 16 23 C -0.19 -2.66 9.77 -26.69 -0.26 -2.92 16 24 C -0.19 -2.38 10.34 -26.70 -0.28 -2.66 16 25 C 0.12 1.70 6.58 -3.13 -0.02 1.68 16 26 H 0.07 1.26 6.19 -51.93 -0.32 0.94 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.53 7.90 -51.93 -0.41 1.12 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.44 5.92 -51.93 -0.31 1.13 16 33 H 0.04 0.88 5.87 -51.93 -0.30 0.57 16 34 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.12 2.49 6.34 -51.93 -0.33 2.16 16 38 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.13 2.24 5.30 -51.93 -0.28 1.97 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.23 7.26 -51.93 -0.38 0.85 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -28.23 349.43 -8.17 -36.40 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.83 Total: 6.89 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.52 Total: 2.44 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.21 Total: -43.81 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.15 Total: -22.16 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.23 -8.17 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522590739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.533 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds