Wall clock time and date at job start Tue Mar 31 2020 06:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47295 * 2 1 4 4 N 1.46502 * 109.47058 * 119.99961 * 2 1 3 5 5 C 1.46499 * 120.00070 * 115.64256 * 4 2 1 6 6 C 1.50695 * 109.47119 * 84.41022 * 5 4 2 7 7 H 1.08004 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00282 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99726 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00345 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46824 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46920 * 120.00002 * 10 8 6 13 13 H 1.48496 * 109.47316 * 240.00305 * 10 8 6 14 14 C 1.34777 * 120.00004 * 295.91970 * 4 2 1 15 15 O 1.21283 * 120.00048 * 5.12013 * 14 4 2 16 16 C 1.50704 * 120.00337 * 185.11928 * 14 4 2 17 17 H 1.09007 * 110.85117 * 317.19112 * 16 14 4 18 18 C 1.54627 * 110.96768 * 80.97843 * 16 14 4 19 19 C 1.51375 * 104.14649 * 93.33468 * 18 16 14 20 20 O 1.21280 * 124.93641 * 196.28734 * 19 18 16 21 21 N 1.34425 * 110.12446 * 16.25593 * 19 18 16 22 22 C 1.46501 * 124.34581 * 180.42180 * 21 19 18 23 23 C 1.52998 * 117.50374 * 8.72301 * 22 21 19 24 24 C 1.52995 * 117.49919 * 300.05958 * 22 21 19 25 25 C 1.46762 * 111.29920 * 0.40273 * 21 19 18 26 26 H 1.08996 * 109.47440 * 295.14444 * 1 2 3 27 27 H 1.08997 * 109.46925 * 55.15213 * 1 2 3 28 28 H 1.09004 * 109.46925 * 175.14602 * 1 2 3 29 29 H 1.08998 * 109.47090 * 239.99272 * 2 1 3 30 30 H 1.09002 * 109.47657 * 184.67206 * 3 2 1 31 31 H 1.08998 * 109.47000 * 304.67398 * 3 2 1 32 32 H 1.09002 * 109.47437 * 64.67358 * 3 2 1 33 33 H 1.09006 * 109.47022 * 204.40513 * 5 4 2 34 34 H 1.08998 * 109.47371 * 324.40485 * 5 4 2 35 35 H 0.97005 * 119.99646 * 180.02562 * 9 8 6 36 36 H 1.08996 * 110.48166 * 212.00236 * 18 16 14 37 37 H 1.09004 * 110.48562 * 334.64293 * 18 16 14 38 38 H 1.09001 * 115.54804 * 154.39751 * 22 21 19 39 39 H 1.09003 * 117.49714 * 0.02562 * 23 22 21 40 40 H 1.08999 * 117.49917 * 145.01660 * 23 22 21 41 41 H 1.09001 * 117.49892 * 214.97964 * 24 22 21 42 42 H 1.09003 * 117.50248 * 0.02562 * 24 22 21 43 43 H 1.08997 * 110.24480 * 223.97967 * 25 21 19 44 44 H 1.09001 * 110.31673 * 102.02399 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7801 -1.9349 1.0639 6 6 4.2315 -1.6117 0.8189 7 1 4.5541 -0.5824 0.7664 8 6 5.1476 -2.6301 0.6616 9 7 4.7546 -3.8836 0.7249 10 14 6.9465 -2.2295 0.3571 11 1 7.1276 -0.7558 0.3297 12 1 7.7738 -2.8093 1.4455 13 1 7.3682 -2.8048 -0.9453 14 6 1.7619 -0.1842 2.4186 15 8 1.0495 0.7906 2.5339 16 6 2.3604 -0.8290 3.6422 17 1 2.2959 -1.9154 3.5791 18 6 3.8232 -0.3725 3.8488 19 6 3.7127 0.8100 4.7873 20 8 4.5880 1.6267 4.9815 21 7 2.5031 0.8237 5.3736 22 6 2.0610 1.8390 6.3328 23 6 2.9594 3.0613 6.5323 24 6 2.8690 1.9911 7.6231 25 6 1.6823 -0.3087 4.9289 26 1 -0.3634 0.4366 0.9302 27 1 -0.3633 0.5872 -0.8434 28 1 -0.3633 -1.0240 -0.0870 29 1 1.8933 -0.5139 -0.8899 30 1 3.1268 1.4436 -0.0837 31 1 1.6099 1.9798 -0.8451 32 1 1.7467 1.9315 0.9289 33 1 2.6874 -2.5170 1.9809 34 1 2.3900 -2.5126 0.2260 35 1 5.3992 -4.6001 0.6147 36 1 4.4104 -1.1690 4.3057 37 1 4.2653 -0.0676 2.9002 38 1 0.9834 1.9912 6.3929 39 1 3.8792 3.1103 5.9495 40 1 2.4728 4.0176 6.7239 41 1 2.3229 2.2440 8.5319 42 1 3.7297 1.3362 7.7582 43 1 0.6670 0.0234 4.7125 44 1 1.6693 -1.0887 5.6903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522590739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:21 Heat of formation + Delta-G solvation = -52.108986 kcal Electronic energy + Delta-G solvation = -25397.425054 eV Core-core repulsion = 21929.272089 eV Total energy + Delta-G solvation = -3468.152965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07284 -40.57461 -37.66508 -37.40085 -36.67313 -34.96458 -33.41124 -31.59962 -28.97153 -28.58446 -28.01729 -25.23998 -24.53610 -23.81844 -23.27946 -22.23412 -20.20859 -19.67415 -18.52546 -18.19353 -17.86423 -17.02021 -16.72993 -16.28262 -16.17930 -15.79478 -15.58516 -14.99455 -14.78468 -14.55612 -14.37700 -14.20197 -14.04589 -13.94459 -13.65244 -13.24876 -13.15685 -12.87224 -12.76078 -12.71995 -12.58261 -12.44389 -12.38227 -12.16184 -12.09327 -11.98302 -11.70228 -11.52273 -11.35085 -10.61708 -10.55011 -10.28488 -9.48604 -9.38392 -8.17135 -6.27834 1.38307 1.44570 1.45240 1.52609 1.73938 1.93475 2.29773 2.44997 2.91254 3.13918 3.35996 3.50154 3.61936 3.84207 3.92905 4.01948 4.10083 4.16967 4.29253 4.40222 4.46316 4.59356 4.61084 4.73795 4.76780 4.77827 4.81111 4.87302 4.96734 5.00037 5.01037 5.02384 5.12791 5.24470 5.28932 5.34626 5.43908 5.71255 5.74028 5.96841 6.07348 6.10694 6.65455 6.88681 7.11674 7.35769 7.47036 8.88031 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.006225 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.507401 B = 4497.000818 C = 5713.364290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.249 3.751 6 C -0.530 4.530 7 H 0.048 0.952 8 C 0.033 3.967 9 N -0.914 5.914 10 Si 0.936 3.064 11 H -0.279 1.279 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.519 3.481 15 O -0.572 6.572 16 C -0.117 4.117 17 H 0.135 0.865 18 C -0.130 4.130 19 C 0.511 3.489 20 O -0.572 6.572 21 N -0.582 5.582 22 C 0.075 3.925 23 C -0.208 4.208 24 C -0.173 4.173 25 C 0.128 3.872 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.154 0.846 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 4.936 8.090 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 C -0.214 4.214 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.569 4.569 7 H 0.066 0.934 8 C -0.168 4.168 9 N -0.554 5.554 10 Si 0.763 3.237 11 H -0.204 1.204 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.308 3.692 15 O -0.454 6.454 16 C -0.138 4.138 17 H 0.153 0.847 18 C -0.170 4.170 19 C 0.300 3.700 20 O -0.453 6.453 21 N -0.312 5.312 22 C -0.028 4.028 23 C -0.245 4.245 24 C -0.211 4.211 25 C 0.006 3.994 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.172 0.828 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.796 5.689 8.235 13.325 hybrid contribution 1.546 -0.121 -0.657 1.684 sum -7.250 5.568 7.578 11.874 Atomic orbital electron populations 1.22068 0.94003 1.01884 1.03056 1.21019 0.94854 0.92917 0.87640 1.22064 0.99945 0.96532 1.02904 1.48277 1.52750 1.25906 1.05177 1.19208 0.89453 0.80765 0.97788 1.21575 0.93577 0.92376 1.49326 0.93425 1.25381 1.01566 0.94842 0.94999 1.69974 1.35755 0.99178 1.50455 0.85834 0.81877 0.78014 0.77930 1.20361 1.20441 1.20623 1.20393 0.80180 0.83635 0.85004 1.90543 1.39861 1.28148 1.86822 1.22284 0.94795 1.03607 0.93094 0.84738 1.22204 0.97134 0.97346 1.00359 1.21279 0.81740 0.86186 0.80752 1.90545 1.44387 1.43806 1.66552 1.47651 1.14541 1.26658 1.42388 1.21835 0.97917 0.91347 0.91664 1.23652 1.03103 0.94327 1.03430 1.23368 1.02428 1.01677 0.93627 1.22133 0.95361 0.87923 0.93948 0.92191 0.90341 0.92777 0.90100 0.94622 0.90117 0.92492 0.93868 0.96263 0.92435 0.85945 0.89178 0.82821 0.88838 0.86549 0.85071 0.90603 0.88699 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.24 71.98 0.66 -3.84 16 2 C 0.14 4.86 3.27 44.99 0.15 5.01 16 3 C -0.16 -5.42 9.13 71.98 0.66 -4.76 16 4 N -0.59 -22.72 2.41 -802.16 -1.93 -24.65 16 5 C 0.25 10.78 4.94 85.63 0.42 11.20 16 6 C -0.53 -25.71 8.05 25.60 0.21 -25.50 16 7 H 0.05 2.44 7.44 -2.91 -0.02 2.41 16 8 C 0.03 1.64 5.46 84.65 0.46 2.11 16 9 N -0.91 -47.50 13.29 21.45 0.28 -47.22 16 10 Si 0.94 41.30 29.54 68.60 2.03 43.33 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.52 19.05 6.23 87.66 0.55 19.60 16 15 O -0.57 -22.25 11.92 -3.04 -0.04 -22.29 16 16 C -0.12 -3.64 2.67 -10.48 -0.03 -3.66 16 17 H 0.13 3.89 6.37 -2.38 -0.02 3.87 16 18 C -0.13 -4.61 6.16 30.62 0.19 -4.42 16 19 C 0.51 18.83 7.88 87.93 0.69 19.52 16 20 O -0.57 -24.69 14.69 -3.03 -0.04 -24.73 16 21 N -0.58 -17.27 3.27 -793.93 -2.60 -19.86 16 22 C 0.08 1.87 6.88 44.99 0.31 2.18 16 23 C -0.21 -5.54 9.77 30.62 0.30 -5.25 16 24 C -0.17 -3.82 10.34 30.62 0.32 -3.51 16 25 C 0.13 3.22 6.58 86.83 0.57 3.79 16 26 H 0.06 1.96 6.19 -2.39 -0.01 1.94 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.88 7.90 -2.39 -0.02 2.86 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.18 5.92 -2.39 -0.01 2.17 16 33 H 0.04 1.86 5.87 -2.38 -0.01 1.84 16 34 H 0.02 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 36 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.09 3.80 6.34 -2.39 -0.02 3.79 16 38 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.09 3.30 5.30 -2.39 -0.01 3.29 16 40 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.09 2.34 7.26 -2.39 -0.02 2.32 16 44 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -61.65 349.43 4.15 -57.50 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.99 Total: 25.46 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.46 Total: 12.46 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -4.24 Total: -91.73 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.08 Total: -47.02 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -61.65 4.15 -57.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522590739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.391 kcal (2) G-P(sol) polarization free energy of solvation -61.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds