Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 H 1.09006 * 109.46864 * 54.99502 * 3 2 1 5 5 C 1.50696 * 109.47446 * 175.00010 * 3 2 1 6 6 H 1.07998 * 119.99848 * 120.00452 * 5 3 2 7 7 C 1.37875 * 119.99976 * 299.99967 * 5 3 2 8 8 N 1.31514 * 120.00079 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00182 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47222 * 89.99943 * 9 7 5 11 11 H 1.48494 * 109.47328 * 210.00440 * 9 7 5 12 12 H 1.48506 * 109.46842 * 330.00409 * 9 7 5 13 13 N 1.46503 * 109.47163 * 295.00497 * 3 2 1 14 14 C 1.34773 * 120.00228 * 85.27153 * 13 3 2 15 15 O 1.21287 * 119.99806 * 357.13456 * 14 13 3 16 16 C 1.50700 * 120.00082 * 177.13580 * 14 13 3 17 17 C 1.50703 * 112.85011 * 293.44789 * 16 14 13 18 18 O 1.21280 * 119.99957 * 125.77358 * 17 16 14 19 19 N 1.34775 * 119.99715 * 305.77347 * 17 16 14 20 20 C 1.46504 * 119.99822 * 174.62995 * 19 17 16 21 21 C 1.53004 * 117.49759 * 223.62530 * 20 19 17 22 22 C 1.53001 * 117.49596 * 155.00071 * 20 19 17 23 23 C 1.53778 * 113.61510 * 162.24770 * 16 14 13 24 24 C 1.53954 * 87.02124 * 220.05041 * 23 16 14 25 25 C 1.53775 * 87.11144 * 25.36503 * 24 23 16 26 26 H 1.08999 * 109.47461 * 299.99704 * 1 2 3 27 27 H 1.09004 * 109.47411 * 60.00015 * 1 2 3 28 28 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47461 * 240.00295 * 2 1 3 30 30 H 1.09004 * 109.47411 * 119.99985 * 2 1 3 31 31 H 0.97001 * 120.00368 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99694 * 264.99264 * 13 3 2 33 33 H 0.97004 * 120.00193 * 354.63411 * 19 17 16 34 34 H 1.08995 * 115.54610 * 9.33293 * 20 19 17 35 35 H 1.08997 * 117.50100 * 359.97438 * 21 20 19 36 36 H 1.08999 * 117.49640 * 145.02656 * 21 20 19 37 37 H 1.08997 * 117.49412 * 214.97789 * 22 20 19 38 38 H 1.08993 * 117.50124 * 0.02562 * 22 20 19 39 39 H 1.09005 * 113.61709 * 334.57205 * 23 16 14 40 40 H 1.09002 * 113.61298 * 105.47046 * 23 16 14 41 41 H 1.08998 * 113.53379 * 270.81449 * 24 23 16 42 42 H 1.08999 * 113.74110 * 139.94691 * 24 23 16 43 43 H 1.09001 * 113.61487 * 220.09614 * 25 24 23 44 44 H 1.08994 * 113.69431 * 89.19929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8802 1.3812 10 1 6.4427 2.1131 2.0836 11 1 6.4390 -0.3108 2.1545 12 1 6.6130 0.8397 0.0269 13 7 1.6523 2.0976 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3550 2.5965 -0.4494 16 6 0.0625 3.3990 -2.6292 17 6 0.8768 4.6482 -2.8470 18 8 1.4773 4.8067 -3.8887 19 7 0.9375 5.5894 -1.8842 20 6 1.8208 6.7469 -2.0461 21 6 2.6497 7.1780 -0.8344 22 6 1.4577 8.0243 -1.2862 23 6 -1.4515 3.6145 -2.7905 24 6 -1.2576 3.2895 -4.2828 25 6 -0.0124 2.4889 -3.8666 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0618 2.9495 32 1 2.2718 2.1233 -1.9977 33 1 0.3965 5.5003 -1.0840 34 1 2.2733 6.8588 -3.0314 35 1 2.5375 6.6007 0.0833 36 1 3.6478 7.5736 -1.0224 37 1 1.6717 8.9765 -1.7715 38 1 0.5619 8.0033 -0.6656 39 1 -2.0563 2.8800 -2.2586 40 1 -1.7688 4.6405 -2.6037 41 1 -1.0308 4.1639 -4.8927 42 1 -2.0519 2.6736 -4.7045 43 1 0.8306 2.6075 -4.5474 44 1 -0.2214 1.4458 -3.6294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547274373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -35.628261 kcal Electronic energy + Delta-G solvation = -25063.479796 eV Core-core repulsion = 21596.041488 eV Total energy + Delta-G solvation = -3467.438307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99631 -38.80399 -37.58199 -36.46201 -34.99865 -32.80780 -32.39885 -30.97787 -27.76807 -26.51042 -25.56885 -23.21667 -22.71488 -22.45887 -21.06166 -20.93004 -19.49339 -19.14890 -17.93862 -16.62390 -16.33163 -15.78279 -15.47374 -15.05277 -14.74122 -14.61037 -14.32288 -14.16438 -13.79057 -13.11452 -12.75338 -12.74074 -12.40896 -12.11836 -12.00879 -11.66904 -11.53141 -11.40671 -11.32780 -11.12540 -10.99425 -10.96320 -10.85761 -10.60554 -10.40625 -10.33561 -10.18084 -9.81579 -9.64209 -9.09158 -8.94958 -8.76498 -8.52144 -7.88660 -6.15189 -4.24384 2.48947 2.94784 3.22717 3.26204 3.29953 3.32790 3.83349 3.95619 4.33827 4.54913 4.59944 4.65784 4.72812 4.80320 4.89042 4.90928 5.16257 5.21681 5.51569 5.56975 5.67541 5.70777 5.82075 5.87678 5.89800 6.01536 6.03438 6.08308 6.36619 6.36640 6.43986 6.47432 6.63018 7.01268 7.14920 7.31841 7.38514 7.44700 7.58776 7.69368 7.85945 8.14165 8.17664 8.60159 8.72913 9.03014 9.42878 10.90019 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.005914 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.515900 B = 4733.087903 C = 6120.857932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.520 3.480 15 O -0.540 6.540 16 C -0.140 4.140 17 C 0.556 3.444 18 O -0.532 6.532 19 N -0.695 5.695 20 C 0.080 3.920 21 C -0.190 4.190 22 C -0.191 4.191 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.109 4.109 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.407 0.593 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 9.443 -8.895 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.303 3.697 15 O -0.419 6.419 16 C -0.147 4.147 17 C 0.342 3.658 18 O -0.408 6.408 19 N -0.345 5.345 20 C -0.026 4.026 21 C -0.229 4.229 22 C -0.229 4.229 23 C -0.138 4.138 24 C -0.178 4.178 25 C -0.147 4.147 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.242 0.758 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.622 9.365 -8.771 14.440 hybrid contribution 1.157 -0.053 0.366 1.215 sum -5.465 9.313 -8.405 13.684 Atomic orbital electron populations 1.21847 0.98283 0.98006 1.01242 1.21936 0.92658 0.99738 1.02355 1.18816 0.94262 0.89271 0.80649 0.93390 1.21223 0.90677 1.39009 1.06274 0.92134 1.24862 0.98563 0.94740 0.95374 1.69889 1.35128 1.37607 1.09358 0.86475 0.84925 0.77649 0.78254 1.20574 1.21035 1.19809 1.46533 1.14345 1.55036 1.18562 1.19610 0.83112 0.80037 0.86976 1.90684 1.50060 1.61153 1.39999 1.22396 0.98836 0.95565 0.97899 1.19517 0.80264 0.83003 0.83016 1.90664 1.45468 1.78349 1.26360 1.45296 1.44504 1.22216 1.22447 1.21584 0.96748 0.86150 0.98103 1.23451 0.96380 1.03361 0.99700 1.23372 1.00039 0.95348 1.04149 1.22804 0.91507 1.02991 0.96516 1.22902 0.98084 1.00600 0.96232 1.22790 0.99671 0.97914 0.94281 0.93184 0.94203 0.95901 0.94981 0.88262 0.92559 0.77797 0.75833 0.84483 0.87978 0.87930 0.88006 0.88498 0.87937 0.91050 0.89848 0.90740 0.89344 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.49 37.15 0.32 -2.64 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.35 7.61 -51.93 -0.40 0.96 16 5 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.72 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.30 5.02 -54.93 -0.28 -14.58 16 14 C 0.52 9.75 5.21 -10.99 -0.06 9.70 16 15 O -0.54 -11.51 13.13 5.55 0.07 -11.44 16 16 C -0.14 -2.12 1.05 -156.00 -0.16 -2.28 16 17 C 0.56 8.68 6.56 -10.98 -0.07 8.60 16 18 O -0.53 -9.32 15.44 5.56 0.09 -9.24 16 19 N -0.70 -9.68 5.45 -53.80 -0.29 -9.97 16 20 C 0.08 0.99 6.44 -67.93 -0.44 0.55 16 21 C -0.19 -2.17 10.46 -26.72 -0.28 -2.45 16 22 C -0.19 -1.85 10.46 -26.73 -0.28 -2.13 16 23 C -0.10 -1.28 6.90 -25.83 -0.18 -1.46 16 24 C -0.14 -1.62 7.80 -25.83 -0.20 -1.82 16 25 C -0.11 -1.46 7.03 -25.92 -0.18 -1.64 16 26 H 0.05 1.15 7.82 -51.93 -0.41 0.74 16 27 H 0.04 0.83 5.60 -51.93 -0.29 0.54 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 7.57 8.54 -40.82 -0.35 7.22 16 33 H 0.41 5.47 8.73 -40.82 -0.36 5.11 16 34 H 0.14 1.77 7.39 -51.93 -0.38 1.38 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.37 7.73 -51.93 -0.40 0.97 16 40 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.23 7.38 -51.93 -0.38 0.84 16 44 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -29.35 357.40 -8.69 -38.04 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -7.04 Total: 14.77 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.23 Total: -4.81 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.06 Total: -48.27 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.16 Total: -20.67 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.35 -8.69 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.414 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds