Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 H 1.09006 * 109.46864 * 54.99502 * 3 2 1 5 5 C 1.50696 * 109.47446 * 175.00010 * 3 2 1 6 6 H 1.07998 * 119.99848 * 120.00452 * 5 3 2 7 7 C 1.37875 * 119.99976 * 299.99967 * 5 3 2 8 8 N 1.31514 * 120.00079 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00182 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47222 * 89.99943 * 9 7 5 11 11 H 1.48494 * 109.47328 * 210.00440 * 9 7 5 12 12 H 1.48506 * 109.46842 * 330.00409 * 9 7 5 13 13 N 1.46503 * 109.47163 * 295.00497 * 3 2 1 14 14 C 1.34773 * 120.00228 * 85.27153 * 13 3 2 15 15 O 1.21287 * 119.99806 * 357.13456 * 14 13 3 16 16 C 1.50700 * 120.00082 * 177.13580 * 14 13 3 17 17 C 1.50703 * 112.85011 * 293.44789 * 16 14 13 18 18 O 1.21280 * 119.99957 * 125.77358 * 17 16 14 19 19 N 1.34775 * 119.99715 * 305.77347 * 17 16 14 20 20 C 1.46504 * 119.99822 * 174.62995 * 19 17 16 21 21 C 1.53004 * 117.49759 * 223.62530 * 20 19 17 22 22 C 1.53001 * 117.49596 * 155.00071 * 20 19 17 23 23 C 1.53778 * 113.61510 * 162.24770 * 16 14 13 24 24 C 1.53954 * 87.02124 * 220.05041 * 23 16 14 25 25 C 1.53775 * 87.11144 * 25.36503 * 24 23 16 26 26 H 1.08999 * 109.47461 * 299.99704 * 1 2 3 27 27 H 1.09004 * 109.47411 * 60.00015 * 1 2 3 28 28 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47461 * 240.00295 * 2 1 3 30 30 H 1.09004 * 109.47411 * 119.99985 * 2 1 3 31 31 H 0.97001 * 120.00368 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99694 * 264.99264 * 13 3 2 33 33 H 0.97004 * 120.00193 * 354.63411 * 19 17 16 34 34 H 1.08995 * 115.54610 * 9.33293 * 20 19 17 35 35 H 1.08997 * 117.50100 * 359.97438 * 21 20 19 36 36 H 1.08999 * 117.49640 * 145.02656 * 21 20 19 37 37 H 1.08997 * 117.49412 * 214.97789 * 22 20 19 38 38 H 1.08993 * 117.50124 * 0.02562 * 22 20 19 39 39 H 1.09005 * 113.61709 * 334.57205 * 23 16 14 40 40 H 1.09002 * 113.61298 * 105.47046 * 23 16 14 41 41 H 1.08998 * 113.53379 * 270.81449 * 24 23 16 42 42 H 1.08999 * 113.74110 * 139.94691 * 24 23 16 43 43 H 1.09001 * 113.61487 * 220.09614 * 25 24 23 44 44 H 1.08994 * 113.69431 * 89.19929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8802 1.3812 10 1 6.4427 2.1131 2.0836 11 1 6.4390 -0.3108 2.1545 12 1 6.6130 0.8397 0.0269 13 7 1.6523 2.0976 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3550 2.5965 -0.4494 16 6 0.0625 3.3990 -2.6292 17 6 0.8768 4.6482 -2.8470 18 8 1.4773 4.8067 -3.8887 19 7 0.9375 5.5894 -1.8842 20 6 1.8208 6.7469 -2.0461 21 6 2.6497 7.1780 -0.8344 22 6 1.4577 8.0243 -1.2862 23 6 -1.4515 3.6145 -2.7905 24 6 -1.2576 3.2895 -4.2828 25 6 -0.0124 2.4889 -3.8666 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0618 2.9495 32 1 2.2718 2.1233 -1.9977 33 1 0.3965 5.5003 -1.0840 34 1 2.2733 6.8588 -3.0314 35 1 2.5375 6.6007 0.0833 36 1 3.6478 7.5736 -1.0224 37 1 1.6717 8.9765 -1.7715 38 1 0.5619 8.0033 -0.6656 39 1 -2.0563 2.8800 -2.2586 40 1 -1.7688 4.6405 -2.6037 41 1 -1.0308 4.1639 -4.8927 42 1 -2.0519 2.6736 -4.7045 43 1 0.8306 2.6075 -4.5474 44 1 -0.2214 1.4458 -3.6294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547274373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -54.426085 kcal Electronic energy + Delta-G solvation = -25064.294931 eV Core-core repulsion = 21596.041488 eV Total energy + Delta-G solvation = -3468.253442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25943 -40.22049 -38.74299 -37.64277 -36.77689 -34.32096 -33.91909 -32.80290 -29.39631 -28.03984 -26.66029 -25.03494 -23.93969 -23.30630 -22.50057 -22.09330 -21.26554 -20.35890 -19.51065 -17.99921 -17.67510 -17.34350 -17.04468 -16.44454 -16.26126 -15.81946 -15.68688 -15.51609 -15.08413 -14.62399 -14.50792 -13.86286 -13.73884 -13.50315 -13.41499 -13.24332 -13.13935 -12.85018 -12.72265 -12.54286 -12.42203 -12.41342 -12.16523 -12.05605 -11.93477 -11.57880 -11.51244 -11.44097 -11.08065 -11.00562 -10.60081 -10.44323 -9.82817 -9.67327 -8.18724 -6.35354 1.24691 1.41175 1.42401 1.52436 1.64483 1.98000 2.31666 2.54193 2.92779 3.10614 3.40743 3.48016 3.54247 3.76364 3.79132 3.87722 4.01097 4.01683 4.39989 4.50599 4.58935 4.67383 4.72870 4.73463 4.76883 4.80749 4.95377 4.98540 5.02661 5.04470 5.06961 5.17050 5.26491 5.38322 5.40986 5.44082 5.53945 5.57949 5.77729 5.87867 6.15650 6.29027 6.71106 6.88527 6.99232 7.29144 7.46288 8.86193 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.005914 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.515900 B = 4733.087903 C = 6120.857932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.282 3.718 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.062 0.938 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.963 3.037 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.266 1.266 13 N -0.700 5.700 14 C 0.523 3.477 15 O -0.566 6.566 16 C -0.141 4.141 17 C 0.555 3.445 18 O -0.554 6.554 19 N -0.692 5.692 20 C 0.055 3.945 21 C -0.198 4.198 22 C -0.160 4.160 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.110 4.110 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.266 0.734 32 H 0.396 0.604 33 H 0.408 0.592 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 10.348 -10.219 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.080 0.920 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.788 3.212 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.309 3.691 15 O -0.446 6.446 16 C -0.148 4.148 17 C 0.340 3.660 18 O -0.432 6.432 19 N -0.340 5.340 20 C -0.050 4.050 21 C -0.236 4.236 22 C -0.198 4.198 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.148 4.148 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.243 0.757 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.837 10.296 -10.106 15.966 hybrid contribution 1.206 -0.293 0.821 1.488 sum -5.631 10.003 -9.286 14.765 Atomic orbital electron populations 1.21684 0.96551 0.99193 1.00539 1.21788 0.94127 0.98985 1.01197 1.18390 0.93412 0.89340 0.80979 0.97796 1.21511 0.91623 1.39019 1.06506 0.91982 1.25654 1.02883 0.94329 0.95030 1.70021 1.36874 1.38185 1.09803 0.85481 0.79666 0.77622 0.78418 1.20291 1.20654 1.19038 1.46338 1.15348 1.55532 1.17450 1.20160 0.81918 0.79217 0.87853 1.90671 1.50616 1.61896 1.41392 1.22461 1.00532 0.95507 0.96275 1.19552 0.80074 0.83275 0.83049 1.90651 1.46362 1.78917 1.27253 1.45343 1.44322 1.22416 1.21952 1.21747 0.97799 0.87174 0.98299 1.23467 0.97815 1.03988 0.98359 1.23459 0.99149 0.94893 1.02313 1.22842 0.89317 1.03722 0.97533 1.22827 0.97512 1.00496 0.95232 1.22857 1.00715 0.98018 0.93193 0.95228 0.93443 0.93697 0.94390 0.90959 0.92509 0.77090 0.75722 0.85049 0.89717 0.86793 0.85595 0.87732 0.88361 0.89786 0.89663 0.88239 0.89807 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.49 71.98 0.61 -4.70 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.20 2.24 44.24 0.10 14.30 16 4 H 0.00 0.25 7.61 -2.38 -0.02 0.23 16 5 C -0.55 -29.13 8.73 25.60 0.22 -28.90 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -51.32 11.29 21.45 0.24 -51.08 16 9 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.70 -29.04 5.02 -446.08 -2.24 -31.28 16 14 C 0.52 19.70 5.21 87.66 0.46 20.16 16 15 O -0.57 -24.39 13.13 -3.05 -0.04 -24.43 16 16 C -0.14 -4.15 1.05 -53.15 -0.06 -4.20 16 17 C 0.55 16.96 6.56 87.66 0.58 17.53 16 18 O -0.55 -19.04 15.44 -3.03 -0.05 -19.09 16 19 N -0.69 -18.94 5.45 -442.52 -2.41 -21.36 16 20 C 0.06 1.31 6.44 44.99 0.29 1.60 16 21 C -0.20 -4.35 10.46 30.60 0.32 -4.03 16 22 C -0.16 -2.76 10.46 30.60 0.32 -2.44 16 23 C -0.10 -2.29 6.90 31.18 0.22 -2.07 16 24 C -0.12 -2.52 7.80 31.18 0.24 -2.27 16 25 C -0.11 -2.79 7.03 31.12 0.22 -2.57 16 26 H 0.03 1.37 7.82 -2.39 -0.02 1.35 16 27 H 0.05 1.96 5.60 -2.39 -0.01 1.94 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 3.93 5.95 -2.39 -0.01 3.91 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.40 15.48 8.54 -92.71 -0.79 14.69 16 33 H 0.41 10.87 8.73 -92.71 -0.81 10.06 16 34 H 0.13 3.30 7.39 -2.39 -0.02 3.28 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 2.47 7.73 -2.38 -0.02 2.45 16 40 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 2.22 7.38 -2.39 -0.02 2.21 16 44 H 0.10 2.38 8.09 -2.39 -0.02 2.36 16 Total: -1.00 -63.86 357.40 1.07 -62.79 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: -0.59 Total: 41.90 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 4.13 Total: -1.74 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -4.41 Total: -103.72 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.09 Total: -43.52 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -63.86 1.07 -62.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.360 kcal (2) G-P(sol) polarization free energy of solvation -63.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds