Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47130 * 2 1 4 4 H 1.08992 * 109.47594 * 304.99993 * 3 2 1 5 5 C 1.50700 * 109.47347 * 184.99837 * 3 2 1 6 6 H 1.08001 * 120.00389 * 240.00431 * 5 3 2 7 7 C 1.37876 * 119.99939 * 59.99910 * 5 3 2 8 8 N 1.31524 * 119.99651 * 359.72925 * 7 5 3 9 9 Si 1.86800 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47128 * 120.00534 * 9 7 5 12 12 H 1.48507 * 109.47095 * 240.00069 * 9 7 5 13 13 N 1.46502 * 109.47190 * 65.00240 * 3 2 1 14 14 C 1.34774 * 119.99974 * 274.99972 * 13 3 2 15 15 O 1.21286 * 119.99904 * 354.73970 * 14 13 3 16 16 C 1.50699 * 120.00236 * 174.74352 * 14 13 3 17 17 C 1.50704 * 112.85103 * 55.38159 * 16 14 13 18 18 O 1.21280 * 120.00019 * 245.04545 * 17 16 14 19 19 N 1.34775 * 119.99847 * 65.03797 * 17 16 14 20 20 C 1.46498 * 120.00084 * 174.98965 * 19 17 16 21 21 C 1.52999 * 117.50126 * 223.62527 * 20 19 17 22 22 C 1.52995 * 117.50213 * 155.00053 * 20 19 17 23 23 C 1.53785 * 113.61516 * 284.18366 * 16 14 13 24 24 C 1.53948 * 87.02138 * 220.04648 * 23 16 14 25 25 C 1.53785 * 87.11467 * 25.36355 * 24 23 16 26 26 H 1.08994 * 109.46835 * 299.99644 * 1 2 3 27 27 H 1.08998 * 109.46712 * 59.99930 * 1 2 3 28 28 H 1.09004 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46920 * 239.99823 * 2 1 3 30 30 H 1.08995 * 109.47020 * 120.00488 * 2 1 3 31 31 H 0.97001 * 119.99628 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00359 * 94.99515 * 13 3 2 33 33 H 0.96999 * 119.99942 * 354.99584 * 19 17 16 34 34 H 1.09002 * 115.54669 * 9.33099 * 20 19 17 35 35 H 1.09000 * 117.49954 * 0.02562 * 21 20 19 36 36 H 1.08999 * 117.50114 * 145.01743 * 21 20 19 37 37 H 1.09000 * 117.50268 * 214.97966 * 22 20 19 38 38 H 1.09006 * 117.49524 * 0.02562 * 22 20 19 39 39 H 1.08996 * 113.61528 * 334.57255 * 23 16 14 40 40 H 1.09002 * 113.60809 * 105.47024 * 23 16 14 41 41 H 1.09000 * 113.54287 * 270.81106 * 24 23 16 42 42 H 1.09003 * 113.74400 * 139.94483 * 24 23 16 43 43 H 1.08993 * 113.61720 * 220.09077 * 25 24 23 44 44 H 1.09002 * 113.68710 * 89.19332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4064 0.3322 -2.1705 9 14 6.0051 0.8800 -1.3811 10 1 6.5989 1.5452 -0.1936 11 1 6.4962 -0.5190 -1.4627 12 1 6.4001 1.6157 -2.6092 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6643 1.3670 15 8 -0.3027 2.7167 0.4059 16 6 -0.0089 3.2331 2.6899 17 6 0.9519 4.2559 3.2395 18 8 1.5511 4.0328 4.2700 19 7 1.1453 5.4184 2.5855 20 6 1.9937 6.4576 3.1742 21 6 1.4904 7.9010 3.1098 22 6 2.6529 7.4558 2.2203 23 6 -0.4208 2.1622 3.7139 24 6 -1.5715 3.1030 4.1149 25 6 -1.4750 3.6974 2.6998 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8295 -0.0656 -2.9474 32 1 2.2720 2.1230 1.9979 33 1 0.7227 5.5671 1.7252 34 1 2.5568 6.1595 4.0586 35 1 0.5278 8.0774 2.6299 36 1 1.7222 8.5529 3.9521 37 1 3.6495 7.8148 2.4772 38 1 2.4549 7.3395 1.1546 39 1 -0.7569 1.2302 3.2597 40 1 0.3141 2.0083 4.5041 41 1 -1.3040 3.8067 4.9032 42 1 -2.5123 2.5879 4.3088 43 1 -1.5900 4.7809 2.6726 44 1 -2.0996 3.1868 1.9669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547274374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = -36.492334 kcal Electronic energy + Delta-G solvation = -24986.850175 eV Core-core repulsion = 21519.374399 eV Total energy + Delta-G solvation = -3467.475776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01269 -38.82426 -37.55864 -36.55131 -34.99616 -32.84787 -32.39081 -30.97432 -27.83134 -26.47891 -25.57408 -23.22630 -22.75822 -22.53694 -21.10248 -20.93888 -19.47203 -19.16542 -17.93850 -16.67468 -16.37994 -15.84488 -15.42377 -15.08845 -14.73903 -14.62187 -14.38686 -14.05648 -13.82887 -13.09946 -12.83543 -12.75717 -12.42696 -12.23281 -11.97945 -11.75500 -11.51616 -11.47060 -11.33157 -11.12508 -11.01769 -10.94945 -10.85004 -10.67136 -10.39842 -10.31066 -10.19212 -9.83279 -9.68086 -9.07643 -8.98890 -8.80866 -8.52701 -7.88366 -6.14264 -4.23204 2.47877 2.91174 3.22194 3.23562 3.30947 3.34437 3.76417 3.97039 4.34965 4.53416 4.59826 4.61403 4.67441 4.79508 4.80883 4.85092 5.17047 5.19815 5.45750 5.56999 5.64281 5.66552 5.79171 5.82384 5.89944 5.91246 6.03111 6.08195 6.33650 6.34756 6.40882 6.42997 6.59536 6.98733 7.13387 7.31017 7.37295 7.40724 7.59016 7.69649 7.86693 8.13300 8.15811 8.60828 8.74392 9.03427 9.43949 10.91007 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.005644 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.343938 B = 4960.267606 C = 6404.827300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.522 3.478 15 O -0.541 6.541 16 C -0.140 4.140 17 C 0.554 3.446 18 O -0.530 6.530 19 N -0.696 5.696 20 C 0.081 3.919 21 C -0.194 4.194 22 C -0.188 4.188 23 C -0.105 4.105 24 C -0.142 4.142 25 C -0.103 4.103 26 H 0.035 0.965 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.406 0.594 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 9.821 10.418 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.305 3.695 15 O -0.420 6.420 16 C -0.147 4.147 17 C 0.339 3.661 18 O -0.406 6.406 19 N -0.346 5.346 20 C -0.025 4.025 21 C -0.233 4.233 22 C -0.226 4.226 23 C -0.143 4.143 24 C -0.179 4.179 25 C -0.141 4.141 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.241 0.759 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.830 9.546 10.277 15.601 hybrid contribution 1.203 0.094 -0.330 1.251 sum -5.627 9.640 9.947 14.951 Atomic orbital electron populations 1.21827 0.98504 0.98300 1.00909 1.21945 0.92492 0.99794 1.02498 1.18831 0.94386 0.89166 0.80851 0.93135 1.21258 0.90677 1.38894 1.06223 0.92101 1.24870 0.98591 0.94752 0.95378 1.69901 1.35029 1.37604 1.09475 0.86416 0.84921 0.77826 0.78111 1.19727 1.20819 1.20884 1.46550 1.14163 1.55198 1.18696 1.19567 0.82934 0.79243 0.87769 1.90675 1.53953 1.58937 1.38397 1.22418 0.96935 0.98131 0.97227 1.19615 0.81374 0.81428 0.83651 1.90676 1.48181 1.77617 1.24131 1.45295 1.50152 1.15530 1.23597 1.21589 0.97361 0.83615 0.99934 1.23429 0.99021 0.97780 1.03073 1.23379 0.98046 1.03140 0.98044 1.22803 0.98338 0.96129 0.97058 1.22908 0.99077 0.99136 0.96803 1.22819 0.92049 1.01262 0.97922 0.94587 0.93137 0.95558 0.88100 0.94895 0.92625 0.77761 0.75911 0.84413 0.88531 0.88075 0.87806 0.88169 0.88824 0.89289 0.90058 0.90650 0.91101 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.59 37.16 0.32 -2.66 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.68 2.25 -69.09 -0.16 6.53 16 4 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.47 11.28 55.43 0.63 -23.84 16 9 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -14.62 4.96 -54.94 -0.27 -14.90 16 14 C 0.52 9.96 5.22 -10.99 -0.06 9.90 16 15 O -0.54 -11.74 13.53 5.55 0.08 -11.67 16 16 C -0.14 -2.13 1.06 -155.99 -0.17 -2.30 16 17 C 0.55 8.51 6.16 -10.98 -0.07 8.44 16 18 O -0.53 -9.28 15.50 5.56 0.09 -9.20 16 19 N -0.70 -9.25 5.56 -53.81 -0.30 -9.55 16 20 C 0.08 0.94 6.44 -67.93 -0.44 0.51 16 21 C -0.19 -1.74 10.46 -26.73 -0.28 -2.02 16 22 C -0.19 -1.86 10.45 -26.73 -0.28 -2.14 16 23 C -0.11 -1.44 7.10 -25.83 -0.18 -1.63 16 24 C -0.14 -1.62 7.81 -25.83 -0.20 -1.82 16 25 C -0.10 -1.30 6.95 -25.91 -0.18 -1.48 16 26 H 0.04 0.74 5.76 -51.93 -0.30 0.44 16 27 H 0.05 1.16 7.92 -51.93 -0.41 0.74 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 7.84 8.32 -40.82 -0.34 7.50 16 33 H 0.41 5.12 8.83 -40.82 -0.36 4.76 16 34 H 0.14 1.72 7.39 -51.93 -0.38 1.34 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 40 H 0.09 1.26 7.34 -51.93 -0.38 0.88 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 44 H 0.11 1.43 7.52 -51.93 -0.39 1.04 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -29.72 357.55 -8.67 -38.39 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.03 Total: 14.25 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.23 Total: -4.56 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.05 Total: -48.28 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.16 Total: -20.86 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.72 -8.67 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.898 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds