Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47130 * 2 1 4 4 H 1.08992 * 109.47594 * 304.99993 * 3 2 1 5 5 C 1.50700 * 109.47347 * 184.99837 * 3 2 1 6 6 H 1.08001 * 120.00389 * 240.00431 * 5 3 2 7 7 C 1.37876 * 119.99939 * 59.99910 * 5 3 2 8 8 N 1.31524 * 119.99651 * 359.72925 * 7 5 3 9 9 Si 1.86800 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47128 * 120.00534 * 9 7 5 12 12 H 1.48507 * 109.47095 * 240.00069 * 9 7 5 13 13 N 1.46502 * 109.47190 * 65.00240 * 3 2 1 14 14 C 1.34774 * 119.99974 * 274.99972 * 13 3 2 15 15 O 1.21286 * 119.99904 * 354.73970 * 14 13 3 16 16 C 1.50699 * 120.00236 * 174.74352 * 14 13 3 17 17 C 1.50704 * 112.85103 * 55.38159 * 16 14 13 18 18 O 1.21280 * 120.00019 * 245.04545 * 17 16 14 19 19 N 1.34775 * 119.99847 * 65.03797 * 17 16 14 20 20 C 1.46498 * 120.00084 * 174.98965 * 19 17 16 21 21 C 1.52999 * 117.50126 * 223.62527 * 20 19 17 22 22 C 1.52995 * 117.50213 * 155.00053 * 20 19 17 23 23 C 1.53785 * 113.61516 * 284.18366 * 16 14 13 24 24 C 1.53948 * 87.02138 * 220.04648 * 23 16 14 25 25 C 1.53785 * 87.11467 * 25.36355 * 24 23 16 26 26 H 1.08994 * 109.46835 * 299.99644 * 1 2 3 27 27 H 1.08998 * 109.46712 * 59.99930 * 1 2 3 28 28 H 1.09004 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46920 * 239.99823 * 2 1 3 30 30 H 1.08995 * 109.47020 * 120.00488 * 2 1 3 31 31 H 0.97001 * 119.99628 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00359 * 94.99515 * 13 3 2 33 33 H 0.96999 * 119.99942 * 354.99584 * 19 17 16 34 34 H 1.09002 * 115.54669 * 9.33099 * 20 19 17 35 35 H 1.09000 * 117.49954 * 0.02562 * 21 20 19 36 36 H 1.08999 * 117.50114 * 145.01743 * 21 20 19 37 37 H 1.09000 * 117.50268 * 214.97966 * 22 20 19 38 38 H 1.09006 * 117.49524 * 0.02562 * 22 20 19 39 39 H 1.08996 * 113.61528 * 334.57255 * 23 16 14 40 40 H 1.09002 * 113.60809 * 105.47024 * 23 16 14 41 41 H 1.09000 * 113.54287 * 270.81106 * 24 23 16 42 42 H 1.09003 * 113.74400 * 139.94483 * 24 23 16 43 43 H 1.08993 * 113.61720 * 220.09077 * 25 24 23 44 44 H 1.09002 * 113.68710 * 89.19332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4064 0.3322 -2.1705 9 14 6.0051 0.8800 -1.3811 10 1 6.5989 1.5452 -0.1936 11 1 6.4962 -0.5190 -1.4627 12 1 6.4001 1.6157 -2.6092 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6643 1.3670 15 8 -0.3027 2.7167 0.4059 16 6 -0.0089 3.2331 2.6899 17 6 0.9519 4.2559 3.2395 18 8 1.5511 4.0328 4.2700 19 7 1.1453 5.4184 2.5855 20 6 1.9937 6.4576 3.1742 21 6 1.4904 7.9010 3.1098 22 6 2.6529 7.4558 2.2203 23 6 -0.4208 2.1622 3.7139 24 6 -1.5715 3.1030 4.1149 25 6 -1.4750 3.6974 2.6998 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8295 -0.0656 -2.9474 32 1 2.2720 2.1230 1.9979 33 1 0.7227 5.5671 1.7252 34 1 2.5568 6.1595 4.0586 35 1 0.5278 8.0774 2.6299 36 1 1.7222 8.5529 3.9521 37 1 3.6495 7.8148 2.4772 38 1 2.4549 7.3395 1.1546 39 1 -0.7569 1.2302 3.2597 40 1 0.3141 2.0083 4.5041 41 1 -1.3040 3.8067 4.9032 42 1 -2.5123 2.5879 4.3088 43 1 -1.5900 4.7809 2.6726 44 1 -2.0996 3.1868 1.9669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547274374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -55.764435 kcal Electronic energy + Delta-G solvation = -24987.685876 eV Core-core repulsion = 21519.374399 eV Total energy + Delta-G solvation = -3468.311477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27115 -40.22058 -38.70389 -37.70372 -36.78884 -34.33712 -33.90336 -32.80906 -29.46252 -28.01999 -26.67022 -25.04629 -23.94489 -23.28828 -22.49913 -22.11582 -21.27045 -20.34872 -19.51196 -18.02317 -17.68595 -17.37847 -17.05303 -16.46702 -16.24657 -15.86869 -15.59359 -15.50149 -15.05287 -14.64483 -14.50159 -14.00399 -13.77275 -13.51389 -13.44087 -13.24395 -13.11285 -12.84243 -12.72700 -12.54123 -12.42085 -12.38489 -12.15813 -12.10386 -11.92533 -11.61719 -11.50176 -11.43493 -11.07544 -11.01182 -10.63646 -10.48032 -9.82682 -9.69278 -8.19214 -6.35898 1.26459 1.40114 1.42151 1.53398 1.61477 1.95222 2.31271 2.53866 2.94518 3.09942 3.40649 3.46506 3.54186 3.76150 3.77680 3.86180 4.02044 4.05930 4.38529 4.47881 4.54491 4.66371 4.73538 4.74582 4.75545 4.80971 4.94206 4.99726 5.01920 5.03396 5.05198 5.19047 5.23654 5.37078 5.40864 5.42201 5.52057 5.57252 5.75864 5.86231 6.14694 6.28918 6.70424 6.86504 6.99497 7.28017 7.44428 8.85890 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.005644 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.343938 B = 4960.267606 C = 6404.827300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.061 0.939 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.280 1.280 13 N -0.702 5.702 14 C 0.525 3.475 15 O -0.568 6.568 16 C -0.141 4.141 17 C 0.553 3.447 18 O -0.555 6.555 19 N -0.690 5.690 20 C 0.050 3.950 21 C -0.168 4.168 22 C -0.186 4.186 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.098 4.098 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.394 0.606 33 H 0.408 0.592 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 10.894 11.772 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.079 0.921 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.349 5.349 14 C 0.310 3.690 15 O -0.448 6.448 16 C -0.148 4.148 17 C 0.338 3.662 18 O -0.433 6.433 19 N -0.338 5.338 20 C -0.055 4.055 21 C -0.206 4.206 22 C -0.224 4.224 23 C -0.147 4.147 24 C -0.160 4.160 25 C -0.136 4.136 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.094 10.653 11.643 17.302 hybrid contribution 1.274 -0.191 -0.784 1.508 sum -5.820 10.462 10.858 16.162 Atomic orbital electron populations 1.21669 0.96644 0.99609 1.00260 1.21791 0.94093 0.98932 1.01311 1.18418 0.93557 0.89322 0.81127 0.97554 1.21531 0.91606 1.39044 1.06482 0.92115 1.25670 1.02985 0.94294 0.95001 1.70029 1.36819 1.38092 1.09915 0.85404 0.79544 0.77957 0.78090 1.19159 1.20234 1.20607 1.46370 1.15221 1.55739 1.17527 1.20156 0.81715 0.78144 0.88959 1.90662 1.54443 1.59726 1.39946 1.22489 0.98327 0.98994 0.94969 1.19590 0.81185 0.81887 0.83503 1.90662 1.49087 1.78233 1.25331 1.45307 1.49780 1.15376 1.23376 1.21739 0.98792 0.84498 1.00457 1.23498 0.98908 0.95201 1.02977 1.23447 0.99232 1.02087 0.97645 1.22869 0.99293 0.96155 0.96358 1.22836 0.99085 0.98261 0.95860 1.22845 0.89649 1.02358 0.98708 0.93787 0.95116 0.93199 0.90732 0.94416 0.92482 0.77240 0.75623 0.85564 0.87666 0.86184 0.86669 0.88648 0.88954 0.89826 0.89491 0.88230 0.89462 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.59 71.98 0.62 -4.78 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.27 2.25 44.24 0.10 14.37 16 4 H 0.01 0.39 7.51 -2.39 -0.02 0.37 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.30 16 6 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -51.55 11.28 21.45 0.24 -51.31 16 9 Si 0.96 42.61 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.70 -29.89 4.96 -446.12 -2.21 -32.11 16 14 C 0.52 20.18 5.22 87.66 0.46 20.63 16 15 O -0.57 -25.02 13.53 -3.05 -0.04 -25.07 16 16 C -0.14 -4.18 1.06 -53.14 -0.06 -4.24 16 17 C 0.55 16.65 6.16 87.66 0.54 17.19 16 18 O -0.56 -19.21 15.50 -3.03 -0.05 -19.26 16 19 N -0.69 -17.83 5.56 -442.54 -2.46 -20.29 16 20 C 0.05 1.12 6.44 44.99 0.29 1.41 16 21 C -0.17 -2.58 10.46 30.59 0.32 -2.26 16 22 C -0.19 -3.39 10.45 30.59 0.32 -3.07 16 23 C -0.11 -2.84 7.10 31.18 0.22 -2.62 16 24 C -0.12 -2.50 7.81 31.18 0.24 -2.25 16 25 C -0.10 -2.31 6.95 31.12 0.22 -2.09 16 26 H 0.04 1.80 5.76 -2.39 -0.01 1.79 16 27 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 4.07 5.94 -2.38 -0.01 4.06 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.39 16.12 8.32 -92.71 -0.77 15.35 16 33 H 0.41 10.04 8.83 -92.71 -0.82 9.22 16 34 H 0.13 3.11 7.39 -2.39 -0.02 3.09 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.09 2.42 8.09 -2.39 -0.02 2.41 16 40 H 0.08 2.29 7.34 -2.39 -0.02 2.27 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 44 H 0.10 2.51 7.52 -2.39 -0.02 2.50 16 Total: -1.00 -64.96 357.55 1.04 -63.92 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.57 Total: 40.72 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 4.11 Total: -1.25 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -4.43 Total: -103.70 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.09 Total: -44.33 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -64.96 1.04 -63.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.158 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds