Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34887 * 117.00275 * 2 1 4 4 O 1.21624 * 120.00167 * 359.97438 * 3 2 1 5 5 C 1.46498 * 119.99879 * 180.02562 * 3 2 1 6 6 C 1.37999 * 126.26078 * 180.18575 * 5 3 2 7 7 C 1.39798 * 106.96516 * 180.25288 * 6 5 3 8 8 C 1.50699 * 126.07915 * 179.77575 * 7 6 5 9 9 N 1.46897 * 109.47178 * 264.10224 * 8 7 6 10 10 C 1.46899 * 110.99857 * 199.47695 * 9 8 7 11 11 C 1.50700 * 109.46754 * 163.31437 * 10 9 8 12 12 H 1.07999 * 120.00807 * 357.01543 * 11 10 9 13 13 C 1.37884 * 120.00156 * 177.00885 * 11 10 9 14 14 N 1.31508 * 120.00398 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99619 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47349 * 89.99701 * 15 13 11 17 17 H 1.48505 * 109.47326 * 210.00050 * 15 13 11 18 18 H 1.48507 * 109.47215 * 329.99915 * 15 13 11 19 19 C 1.46903 * 110.99662 * 75.52623 * 9 8 7 20 20 C 1.52995 * 109.47148 * 71.11056 * 19 9 8 21 21 C 1.53004 * 109.46817 * 191.10747 * 19 9 8 22 22 C 1.35487 * 107.84173 * 359.74131 * 7 6 5 23 23 N 1.34959 * 108.99135 * 0.02562 * 22 7 6 24 24 C 1.46498 * 125.63975 * 180.02562 * 23 22 7 25 25 H 1.09007 * 109.47078 * 300.00429 * 1 2 3 26 26 H 1.09001 * 109.47099 * 59.99723 * 1 2 3 27 27 H 1.08997 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.07997 * 126.52012 * 359.97438 * 6 5 3 29 29 H 1.09000 * 109.47083 * 24.10222 * 8 7 6 30 30 H 1.09000 * 109.46881 * 144.10590 * 8 7 6 31 31 H 1.08997 * 109.47300 * 283.31435 * 10 9 8 32 32 H 1.09005 * 109.46931 * 43.32331 * 10 9 8 33 33 H 0.96999 * 120.00254 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.47461 * 311.10490 * 19 9 8 35 35 H 1.08999 * 109.47382 * 69.09954 * 20 19 9 36 36 H 1.08994 * 109.47378 * 189.09772 * 20 19 9 37 37 H 1.09003 * 109.47293 * 309.10222 * 20 19 9 38 38 H 1.08999 * 109.47087 * 52.08207 * 21 19 9 39 39 H 1.08999 * 109.46715 * 172.08343 * 21 19 9 40 40 H 1.09007 * 109.47345 * 292.08519 * 21 19 9 41 41 H 1.08006 * 125.50460 * 179.97438 * 22 7 6 42 42 H 1.09003 * 109.47230 * 90.02212 * 24 23 22 43 43 H 1.08998 * 109.46916 * 330.01974 * 24 23 22 44 44 H 1.08999 * 109.46806 * 210.01978 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5274 1.2784 -0.0006 6 6 4.2843 2.4323 0.0030 7 6 5.6261 2.0399 -0.0050 8 6 6.8197 2.9599 -0.0095 9 7 7.2871 3.1490 -1.3893 10 6 8.6732 3.6347 -1.4136 11 6 9.2528 3.4307 -2.7897 12 1 8.6684 2.9412 -3.5548 13 6 10.5291 3.8692 -3.0722 14 7 11.0347 3.6917 -4.2731 15 14 11.5402 4.7154 -1.7489 16 1 12.3223 3.7003 -0.9985 17 1 12.4682 5.6875 -2.3807 18 1 10.6338 5.4313 -0.8154 19 6 6.3980 4.0569 -2.1263 20 6 6.5760 5.4828 -1.6010 21 6 6.7470 4.0148 -3.6155 22 6 5.6626 0.6856 -0.0073 23 7 4.3988 0.2122 -0.0016 24 6 4.0170 -1.2022 -0.0013 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9112 3.4457 0.0063 29 1 6.5371 3.9238 0.4137 30 1 7.6189 2.5210 0.5878 31 1 8.6908 4.6959 -1.1656 32 1 9.2650 3.0812 -0.6845 33 1 11.9328 3.9998 -4.4717 34 1 5.3631 3.7448 -1.9868 35 1 7.5609 5.8541 -1.8842 36 1 5.8081 6.1265 -2.0298 37 1 6.4859 5.4837 -0.5147 38 1 6.7570 2.9798 -3.9571 39 1 6.0020 4.5763 -4.1792 40 1 7.7306 4.4582 -3.7709 41 1 6.5584 0.0822 -0.0136 42 1 3.9270 -1.5541 1.0264 43 1 4.7792 -1.7843 -0.5193 44 1 3.0608 -1.3205 -0.5109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569274064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = -17.021461 kcal Electronic energy + Delta-G solvation = -24262.762531 eV Core-core repulsion = 20796.131075 eV Total energy + Delta-G solvation = -3466.631456 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48069 -39.94355 -37.75106 -36.54999 -33.41424 -32.37357 -31.05996 -29.85865 -28.54087 -27.53746 -26.55703 -26.19529 -24.05883 -22.89339 -21.77907 -19.96618 -19.84970 -18.60969 -17.37982 -17.07249 -16.62316 -16.55985 -15.66191 -15.37200 -15.02806 -14.50114 -14.11627 -13.99543 -13.44009 -13.39467 -13.18457 -13.06281 -12.82379 -12.50474 -12.35153 -12.21745 -12.07604 -11.76555 -11.45920 -11.16803 -11.14687 -11.02540 -10.83788 -10.77585 -10.54874 -10.38157 -10.18515 -9.91079 -9.59915 -8.88748 -8.55791 -8.42343 -8.08844 -7.17065 -5.97431 -3.90562 1.24122 2.49216 2.73270 2.84226 3.19220 3.31598 3.39889 3.41600 4.47777 4.61006 4.74747 4.84291 4.93136 5.00953 5.06686 5.14943 5.25641 5.32550 5.37785 5.47777 5.52965 5.77145 5.85752 5.94578 6.01438 6.09569 6.16061 6.24353 6.37452 6.45062 6.62062 6.70410 6.76437 6.86727 6.98532 7.02561 7.09143 7.24385 7.25461 7.63127 7.66894 7.74054 8.06936 8.23168 8.77251 9.14535 9.64422 11.14560 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.003596 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.130291 B = 7785.468137 C = 8084.961737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.539 3.461 4 O -0.506 6.506 5 C -0.065 4.065 6 C -0.082 4.082 7 C -0.155 4.155 8 C 0.116 3.884 9 N -0.517 5.517 10 C 0.152 3.848 11 C -0.501 4.501 12 H 0.095 0.905 13 C 0.065 3.935 14 N -0.903 5.903 15 Si 0.867 3.133 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.268 1.268 19 C 0.093 3.907 20 C -0.183 4.183 21 C -0.144 4.144 22 C 0.059 3.941 23 N -0.423 5.423 24 C 0.069 3.931 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.146 0.854 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.000 1.000 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.864 -8.631 10.411 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.386 3.614 4 O -0.394 6.394 5 C -0.174 4.174 6 C -0.109 4.109 7 C -0.161 4.161 8 C -0.012 4.012 9 N -0.241 5.241 10 C 0.026 3.974 11 C -0.539 4.539 12 H 0.113 0.887 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.695 3.305 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.192 1.192 19 C -0.016 4.016 20 C -0.242 4.242 21 C -0.202 4.202 22 C -0.078 4.078 23 N -0.097 5.097 24 C -0.073 4.073 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.163 0.837 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.018 0.982 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.119 0.881 41 H 0.191 0.809 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.100 -9.142 10.066 21.847 hybrid contribution 0.479 1.195 1.045 1.658 sum -16.620 -7.947 11.112 21.514 Atomic orbital electron populations 1.23242 0.76206 1.03509 1.02702 1.86595 1.23545 1.33040 1.85106 1.19866 0.87091 0.81499 0.72940 1.90890 1.65571 1.35775 1.47167 1.19167 0.86102 0.88143 1.23945 1.21251 0.92028 0.96466 1.01168 1.19453 0.94171 0.93134 1.09387 1.20452 0.93192 0.95669 0.91911 1.62206 1.03363 1.47983 1.10512 1.20336 0.84751 0.93740 0.98541 1.21347 0.99213 1.37195 0.96193 0.88745 1.24899 0.97466 0.96110 0.95056 1.69883 1.16472 1.47901 1.20011 0.86987 0.80707 0.80022 0.82786 1.20409 1.21483 1.19241 1.21435 0.95661 0.89189 0.95315 1.22459 1.02408 0.99288 1.00051 1.22243 1.03139 1.01581 0.93193 1.21859 0.86513 0.95164 1.04282 1.43802 1.05781 1.06094 1.54069 1.22229 1.03276 0.78191 1.03563 0.91883 0.91802 0.88170 0.83671 0.94447 0.90904 0.98211 0.96394 0.92852 0.92004 0.91413 0.93406 0.93675 0.92848 0.95622 0.88144 0.80937 0.90749 0.89475 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.37 -3.97 7.99 -41.00 -0.33 -4.29 16 3 C 0.54 7.52 7.92 34.06 0.27 7.79 16 4 O -0.51 -8.22 16.68 -19.36 -0.32 -8.55 16 5 C -0.07 -0.93 6.89 -81.99 -0.56 -1.50 16 6 C -0.08 -1.25 9.65 -39.09 -0.38 -1.63 16 7 C -0.16 -2.39 5.12 -105.02 -0.54 -2.92 16 8 C 0.12 1.96 5.38 -4.98 -0.03 1.94 16 9 N -0.52 -10.46 4.41 -229.52 -1.01 -11.47 16 10 C 0.15 3.53 3.55 -4.98 -0.02 3.52 16 11 C -0.50 -13.52 7.22 -34.44 -0.25 -13.77 16 12 H 0.09 2.75 5.67 -52.49 -0.30 2.45 16 13 C 0.07 1.83 5.47 -17.82 -0.10 1.74 16 14 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 15 Si 0.87 21.08 27.53 -169.99 -4.68 16.40 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.27 6.46 56.52 0.36 -5.91 16 19 C 0.09 1.79 2.82 -67.71 -0.19 1.60 16 20 C -0.18 -3.31 8.28 37.15 0.31 -3.00 16 21 C -0.14 -3.02 7.70 37.16 0.29 -2.73 16 22 C 0.06 0.79 11.26 -17.16 -0.19 0.60 16 23 N -0.42 -5.22 3.15 -120.40 -0.38 -5.60 16 24 C 0.07 0.57 10.57 59.85 0.63 1.20 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 29 H 0.04 0.62 6.15 -51.93 -0.32 0.30 16 30 H 0.07 1.17 7.64 -51.93 -0.40 0.78 16 31 H 0.00 0.01 4.55 -51.93 -0.24 -0.23 16 32 H 0.02 0.42 7.25 -51.93 -0.38 0.04 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.06 1.15 6.63 -51.93 -0.34 0.81 16 35 H 0.07 1.36 6.54 -51.93 -0.34 1.02 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.76 6.28 -51.93 -0.33 0.43 16 38 H 0.05 1.17 7.54 -51.93 -0.39 0.78 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 2.42 5.39 -51.93 -0.28 2.14 16 41 H 0.17 1.98 8.06 -52.48 -0.42 1.56 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.77 6.13 -51.93 -0.32 0.46 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -32.07 347.95 -7.00 -39.07 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.60 Total: 1.30 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 0.31 Total: -5.83 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.62 Total: -43.34 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.65 Total: -12.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.68 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.07 -7.00 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569274064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.045 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds