Wall clock time and date at job start Tue Mar 31 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34887 * 117.00275 * 2 1 4 4 O 1.21624 * 120.00167 * 359.97438 * 3 2 1 5 5 C 1.46498 * 119.99879 * 180.02562 * 3 2 1 6 6 C 1.37999 * 126.26078 * 180.18575 * 5 3 2 7 7 C 1.39798 * 106.96516 * 180.25288 * 6 5 3 8 8 C 1.50699 * 126.07915 * 179.77575 * 7 6 5 9 9 N 1.46897 * 109.47178 * 264.10224 * 8 7 6 10 10 C 1.46899 * 110.99857 * 199.47695 * 9 8 7 11 11 C 1.50700 * 109.46754 * 163.31437 * 10 9 8 12 12 H 1.07999 * 120.00807 * 357.01543 * 11 10 9 13 13 C 1.37884 * 120.00156 * 177.00885 * 11 10 9 14 14 N 1.31508 * 120.00398 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99619 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47349 * 89.99701 * 15 13 11 17 17 H 1.48505 * 109.47326 * 210.00050 * 15 13 11 18 18 H 1.48507 * 109.47215 * 329.99915 * 15 13 11 19 19 C 1.46903 * 110.99662 * 75.52623 * 9 8 7 20 20 C 1.52995 * 109.47148 * 71.11056 * 19 9 8 21 21 C 1.53004 * 109.46817 * 191.10747 * 19 9 8 22 22 C 1.35487 * 107.84173 * 359.74131 * 7 6 5 23 23 N 1.34959 * 108.99135 * 0.02562 * 22 7 6 24 24 C 1.46498 * 125.63975 * 180.02562 * 23 22 7 25 25 H 1.09007 * 109.47078 * 300.00429 * 1 2 3 26 26 H 1.09001 * 109.47099 * 59.99723 * 1 2 3 27 27 H 1.08997 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.07997 * 126.52012 * 359.97438 * 6 5 3 29 29 H 1.09000 * 109.47083 * 24.10222 * 8 7 6 30 30 H 1.09000 * 109.46881 * 144.10590 * 8 7 6 31 31 H 1.08997 * 109.47300 * 283.31435 * 10 9 8 32 32 H 1.09005 * 109.46931 * 43.32331 * 10 9 8 33 33 H 0.96999 * 120.00254 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.47461 * 311.10490 * 19 9 8 35 35 H 1.08999 * 109.47382 * 69.09954 * 20 19 9 36 36 H 1.08994 * 109.47378 * 189.09772 * 20 19 9 37 37 H 1.09003 * 109.47293 * 309.10222 * 20 19 9 38 38 H 1.08999 * 109.47087 * 52.08207 * 21 19 9 39 39 H 1.08999 * 109.46715 * 172.08343 * 21 19 9 40 40 H 1.09007 * 109.47345 * 292.08519 * 21 19 9 41 41 H 1.08006 * 125.50460 * 179.97438 * 22 7 6 42 42 H 1.09003 * 109.47230 * 90.02212 * 24 23 22 43 43 H 1.08998 * 109.46916 * 330.01974 * 24 23 22 44 44 H 1.08999 * 109.46806 * 210.01978 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5274 1.2784 -0.0006 6 6 4.2843 2.4323 0.0030 7 6 5.6261 2.0399 -0.0050 8 6 6.8197 2.9599 -0.0095 9 7 7.2871 3.1490 -1.3893 10 6 8.6732 3.6347 -1.4136 11 6 9.2528 3.4307 -2.7897 12 1 8.6684 2.9412 -3.5548 13 6 10.5291 3.8692 -3.0722 14 7 11.0347 3.6917 -4.2731 15 14 11.5402 4.7154 -1.7489 16 1 12.3223 3.7003 -0.9985 17 1 12.4682 5.6875 -2.3807 18 1 10.6338 5.4313 -0.8154 19 6 6.3980 4.0569 -2.1263 20 6 6.5760 5.4828 -1.6010 21 6 6.7470 4.0148 -3.6155 22 6 5.6626 0.6856 -0.0073 23 7 4.3988 0.2122 -0.0016 24 6 4.0170 -1.2022 -0.0013 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9112 3.4457 0.0063 29 1 6.5371 3.9238 0.4137 30 1 7.6189 2.5210 0.5878 31 1 8.6908 4.6959 -1.1656 32 1 9.2650 3.0812 -0.6845 33 1 11.9328 3.9998 -4.4717 34 1 5.3631 3.7448 -1.9868 35 1 7.5609 5.8541 -1.8842 36 1 5.8081 6.1265 -2.0298 37 1 6.4859 5.4837 -0.5147 38 1 6.7570 2.9798 -3.9571 39 1 6.0020 4.5763 -4.1792 40 1 7.7306 4.4582 -3.7709 41 1 6.5584 0.0822 -0.0136 42 1 3.9270 -1.5541 1.0264 43 1 4.7792 -1.7843 -0.5193 44 1 3.0608 -1.3205 -0.5109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569274064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:34 Heat of formation + Delta-G solvation = -36.919716 kcal Electronic energy + Delta-G solvation = -24263.625385 eV Core-core repulsion = 20796.131075 eV Total energy + Delta-G solvation = -3467.494309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51249 -40.94096 -39.32326 -37.53624 -34.79403 -34.15736 -32.45632 -31.10723 -30.05086 -28.38918 -27.92759 -27.57177 -25.32083 -23.97111 -23.60511 -21.04378 -20.94840 -20.13564 -18.93377 -18.15784 -18.00280 -17.54132 -16.89853 -16.54761 -16.36991 -15.99228 -15.63814 -15.02120 -14.86767 -14.61191 -14.36759 -14.32439 -14.30361 -13.73360 -13.35815 -13.26855 -13.22810 -13.13127 -12.88037 -12.83994 -12.60310 -12.43993 -12.29846 -12.04724 -11.87985 -11.85975 -11.80272 -11.71898 -11.35722 -10.89078 -10.54660 -9.60259 -9.19224 -8.76027 -8.12477 -6.08915 0.18635 1.39927 1.42197 1.50896 1.58224 1.65644 1.95097 2.08523 2.44453 3.19739 3.50784 3.72544 3.94492 4.15110 4.22959 4.29755 4.32852 4.37628 4.41001 4.45095 4.49325 4.59810 4.65694 4.69218 4.79002 4.81584 4.91575 4.93449 4.95978 5.09580 5.13955 5.21190 5.24800 5.27024 5.33780 5.56313 5.71910 5.74969 5.84318 6.00109 6.21169 6.28684 6.60386 6.66040 6.86409 6.96818 7.49528 9.02626 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.003596 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.130291 B = 7785.468137 C = 8084.961737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.537 6.537 5 C -0.077 4.077 6 C -0.098 4.098 7 C -0.176 4.176 8 C 0.121 3.879 9 N -0.529 5.529 10 C 0.161 3.839 11 C -0.493 4.493 12 H 0.061 0.939 13 C 0.006 3.994 14 N -0.952 5.952 15 Si 0.931 3.069 16 H -0.269 1.269 17 H -0.292 1.292 18 H -0.251 1.251 19 C 0.094 3.906 20 C -0.176 4.176 21 C -0.134 4.134 22 C 0.065 3.935 23 N -0.414 5.414 24 C 0.061 3.939 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.001 0.999 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.194 0.806 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 -9.677 12.486 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.390 3.610 4 O -0.428 6.428 5 C -0.186 4.186 6 C -0.126 4.126 7 C -0.182 4.182 8 C -0.007 4.007 9 N -0.253 5.253 10 C 0.034 3.966 11 C -0.531 4.531 12 H 0.079 0.921 13 C -0.190 4.190 14 N -0.595 5.595 15 Si 0.756 3.244 16 H -0.195 1.195 17 H -0.218 1.218 18 H -0.175 1.175 19 C -0.014 4.014 20 C -0.235 4.235 21 C -0.192 4.192 22 C -0.074 4.074 23 N -0.087 5.087 24 C -0.078 4.078 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.018 0.982 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.211 0.789 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.264 -10.228 12.167 24.212 hybrid contribution 0.666 1.386 0.349 1.577 sum -17.598 -8.842 12.517 23.336 Atomic orbital electron populations 1.23591 0.74225 1.05965 1.02568 1.86587 1.25381 1.31173 1.84345 1.19858 0.87014 0.81889 0.72253 1.90870 1.66187 1.36954 1.48761 1.19252 0.86669 0.88610 1.24096 1.21283 0.92356 0.96812 1.02105 1.19331 0.93534 0.93876 1.11443 1.20436 0.94063 0.96487 0.89745 1.62102 1.02095 1.48064 1.13002 1.20114 0.86591 0.93834 0.96020 1.21558 0.98798 1.35456 0.97302 0.92134 1.25684 0.98926 0.97266 0.97101 1.70039 1.16989 1.50083 1.22379 0.85951 0.79150 0.79064 0.80196 1.19468 1.21819 1.17483 1.21411 0.95947 0.90136 0.93912 1.22361 1.01673 0.98427 1.01019 1.22058 1.01711 1.00180 0.95211 1.22146 0.87513 0.94830 1.02877 1.44049 1.05085 1.07299 1.52317 1.22551 1.04062 0.75977 1.05259 0.91869 0.92182 0.84399 0.84227 0.93934 0.90106 0.98178 0.95809 0.93008 0.90828 0.93725 0.91459 0.92259 0.94803 0.93498 0.91745 0.78922 0.88737 0.87478 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -7.02 7.99 -58.01 -0.46 -7.48 16 3 C 0.54 14.49 7.92 69.97 0.55 15.04 16 4 O -0.54 -17.23 16.68 19.43 0.32 -16.91 16 5 C -0.08 -2.10 6.89 40.32 0.28 -1.82 16 6 C -0.10 -2.91 9.65 22.59 0.22 -2.69 16 7 C -0.18 -5.13 5.12 -20.12 -0.10 -5.24 16 8 C 0.12 3.86 5.38 85.56 0.46 4.32 16 9 N -0.53 -20.96 4.41 -880.08 -3.88 -24.84 16 10 C 0.16 7.36 3.55 85.56 0.30 7.67 16 11 C -0.49 -27.08 7.22 25.60 0.18 -26.90 16 12 H 0.06 3.68 5.67 -2.91 -0.02 3.66 16 13 C 0.01 0.35 5.47 84.66 0.46 0.81 16 14 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 15 Si 0.93 43.50 27.53 68.60 1.89 45.39 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.25 -10.94 6.46 99.48 0.64 -10.30 16 19 C 0.09 3.59 2.82 44.91 0.13 3.72 16 20 C -0.18 -6.12 8.28 71.98 0.60 -5.53 16 21 C -0.13 -5.72 7.70 71.98 0.55 -5.16 16 22 C 0.07 1.60 11.26 83.58 0.94 2.55 16 23 N -0.41 -9.26 3.15 -534.84 -1.68 -10.94 16 24 C 0.06 0.81 10.57 127.77 1.35 2.16 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.04 1.32 6.15 -2.39 -0.01 1.30 16 30 H 0.08 2.43 7.64 -2.39 -0.02 2.41 16 31 H 0.00 0.03 4.55 -2.39 -0.01 0.02 16 32 H 0.02 1.07 7.25 -2.38 -0.02 1.05 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.07 2.66 6.63 -2.39 -0.02 2.64 16 35 H 0.04 1.75 6.54 -2.39 -0.02 1.73 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.88 6.28 -2.39 -0.01 1.86 16 38 H 0.03 1.52 7.54 -2.39 -0.02 1.50 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 3.21 5.39 -2.38 -0.01 3.20 16 41 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.10 1.29 6.13 -2.39 -0.01 1.28 16 Total: -1.00 -70.88 347.95 4.54 -66.34 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.93 Total: 16.44 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 7.12 Total: -9.48 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.26 Total: -94.30 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.14 Total: -24.39 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.89 Total: 45.39 kcal Total: -70.88 4.54 -66.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569274064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.418 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds