Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46573 * 2 1 4 4 H 1.09001 * 109.47135 * 55.00048 * 3 2 1 5 5 C 1.50703 * 109.46796 * 174.99767 * 3 2 1 6 6 H 1.08003 * 119.99813 * 120.00356 * 5 3 2 7 7 C 1.37875 * 119.99982 * 299.99980 * 5 3 2 8 8 N 1.31518 * 119.99820 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48511 * 109.46796 * 90.00152 * 9 7 5 11 11 H 1.48499 * 109.47474 * 209.99876 * 9 7 5 12 12 H 1.48497 * 109.47442 * 330.00222 * 9 7 5 13 13 N 1.46503 * 109.47152 * 294.99668 * 3 2 1 14 14 C 1.34778 * 119.99361 * 85.00521 * 13 3 2 15 15 O 1.21276 * 120.00771 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99181 * 180.02562 * 14 13 3 17 17 H 1.08992 * 110.41771 * 35.80355 * 16 14 13 18 18 C 1.54906 * 110.36400 * 273.50291 * 16 14 13 19 19 C 1.55158 * 101.61528 * 204.17533 * 18 16 14 20 20 C 1.54322 * 102.94257 * 35.48334 * 19 18 16 21 21 N 1.47018 * 107.27343 * 337.80835 * 20 19 18 22 22 C 1.34777 * 125.65213 * 178.90278 * 21 20 19 23 23 O 1.21280 * 120.00376 * 174.56694 * 22 21 20 24 24 C 1.50704 * 119.99490 * 354.57372 * 22 21 20 25 25 C 1.52994 * 117.49771 * 248.61577 * 24 22 21 26 26 C 1.53000 * 60.00297 * 252.51763 * 25 24 22 27 27 H 1.09008 * 109.46443 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47606 * 299.99788 * 1 2 3 29 29 H 1.09001 * 109.47082 * 60.00501 * 1 2 3 30 30 H 1.08998 * 109.47173 * 240.00289 * 2 1 3 31 31 H 1.09001 * 109.47082 * 119.99499 * 2 1 3 32 32 H 0.96998 * 119.99959 * 179.97438 * 8 7 5 33 33 H 0.96991 * 119.99740 * 264.99929 * 13 3 2 34 34 H 1.08995 * 111.00272 * 86.08377 * 18 16 14 35 35 H 1.09000 * 111.00813 * 322.26974 * 18 16 14 36 36 H 1.09003 * 110.72265 * 153.85114 * 19 18 16 37 37 H 1.09008 * 110.72010 * 276.94374 * 19 18 16 38 38 H 1.09001 * 109.88036 * 97.22771 * 20 19 18 39 39 H 1.08996 * 109.88007 * 218.23328 * 20 19 18 40 40 H 1.09002 * 115.55222 * 34.32992 * 24 22 21 41 41 H 1.09000 * 117.49685 * 0.02562 * 25 24 22 42 42 H 1.09005 * 117.49967 * 145.02520 * 25 24 22 43 43 H 1.09009 * 117.49721 * 252.51409 * 26 25 24 44 44 H 1.08993 * 117.52365 * 107.48388 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4445 0.1239 6 1 4.1471 1.8891 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8798 1.3359 9 14 3.0963 0.1103 2.5708 10 1 2.8745 -1.3259 2.2646 11 1 3.7940 0.2362 3.8756 12 1 1.7880 0.8095 2.6396 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3669 15 8 -0.3397 2.6319 -0.4344 16 6 0.0361 3.3376 -2.6549 17 1 0.4512 2.8018 -3.5084 18 6 0.5102 4.8123 -2.6616 19 6 -0.4820 5.4548 -3.6667 20 6 -1.7946 4.6911 -3.3927 21 7 -1.4328 3.4133 -2.7620 22 6 -2.2998 2.4680 -2.3485 23 8 -1.8866 1.4073 -1.9301 24 6 -3.7830 2.7289 -2.4063 25 6 -4.5264 2.8775 -1.0774 26 6 -4.7153 1.6163 -1.9227 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8770 0.4820 2.1129 33 1 2.2719 2.1232 -1.9977 34 1 1.5362 4.8912 -3.0210 35 1 0.4093 5.2597 -1.6728 36 1 -0.6044 6.5183 -3.4614 37 1 -0.1480 5.2975 -4.6923 38 1 -2.4271 5.2705 -2.7201 39 1 -2.3200 4.5088 -4.3301 40 1 -4.1206 3.3401 -3.2433 41 1 -3.9426 2.7870 -0.1613 42 1 -5.3533 3.5868 -1.0398 43 1 -5.6665 1.4958 -2.4413 44 1 -4.2560 0.6956 -1.5632 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592790600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = -36.417390 kcal Electronic energy + Delta-G solvation = -25304.557259 eV Core-core repulsion = 21837.084732 eV Total energy + Delta-G solvation = -3467.472527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54046 -38.70849 -37.46188 -35.83628 -35.05038 -32.36469 -31.73157 -31.36255 -29.43839 -27.26060 -25.22487 -23.24032 -22.50305 -22.33968 -21.78975 -20.55384 -19.54609 -18.82081 -17.71594 -17.19675 -16.40410 -15.80942 -15.41520 -15.07586 -14.89750 -14.31680 -14.20275 -13.99125 -13.54006 -13.35960 -13.20541 -12.79517 -12.53392 -12.30019 -12.06061 -11.94228 -11.61906 -11.59468 -11.49622 -11.43283 -11.00059 -10.84236 -10.75817 -10.65570 -10.53606 -10.42071 -9.80568 -9.64246 -9.34907 -9.10883 -9.04438 -8.68130 -8.44998 -7.90940 -6.15737 -4.17204 2.67119 2.84891 3.30277 3.39237 3.40507 3.48461 3.86940 3.98868 4.37823 4.38820 4.44142 4.70198 4.74335 4.76711 4.85002 5.03142 5.12706 5.18477 5.20460 5.40500 5.51229 5.52090 5.55788 5.63870 5.72424 5.77633 5.92562 6.02215 6.09500 6.19767 6.26217 6.31089 6.46139 6.87554 6.92400 7.07425 7.29913 7.40784 7.49876 7.59423 7.63134 8.23618 8.49251 8.63283 8.82343 9.08906 9.46735 10.96328 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.005168 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.490819 B = 5416.924663 C = 6478.721933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C 0.247 3.753 4 H 0.046 0.954 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.261 1.261 13 N -0.700 5.700 14 C 0.506 3.494 15 O -0.528 6.528 16 C 0.116 3.884 17 H 0.090 0.910 18 C -0.121 4.121 19 C -0.130 4.130 20 C 0.105 3.895 21 N -0.606 5.606 22 C 0.560 3.440 23 O -0.506 6.506 24 C -0.187 4.187 25 C -0.150 4.150 26 C -0.150 4.150 27 H 0.022 0.978 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.392 0.608 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 9.084 -12.233 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.532 5.532 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.290 3.710 15 O -0.405 6.405 16 C 0.009 3.991 17 H 0.108 0.892 18 C -0.159 4.159 19 C -0.168 4.168 20 C -0.018 4.018 21 N -0.342 5.342 22 C 0.349 3.651 23 O -0.379 6.379 24 C -0.208 4.208 25 C -0.188 4.188 26 C -0.187 4.187 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.225 0.775 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.036 8.341 -11.163 22.010 hybrid contribution -0.015 -0.409 0.296 0.505 sum -17.052 7.932 -10.867 21.720 Atomic orbital electron populations 1.22048 0.96056 0.98973 1.03932 1.22259 0.95065 0.99633 1.00490 1.19094 0.95278 0.88606 0.82726 0.93638 1.21078 0.88742 1.39543 1.07691 0.90253 1.24813 0.94829 0.95122 0.97682 1.69872 1.08655 1.44798 1.29835 0.86897 0.80936 0.80084 0.80757 1.20291 1.22312 1.18538 1.46057 1.14752 1.56119 1.17958 1.20093 0.82704 0.79405 0.88842 1.90662 1.50878 1.58757 1.40189 1.21869 0.81875 0.97719 0.97624 0.89231 1.22741 0.99936 0.92295 1.00971 1.22634 0.94158 1.00018 0.99957 1.21974 0.97786 0.84689 0.97363 1.48099 1.05073 1.18975 1.62040 1.19202 0.86339 0.82997 0.76586 1.90686 1.78605 1.24451 1.44197 1.22105 0.91111 1.06620 1.00936 1.22920 1.01493 1.00488 0.93873 1.22938 0.99246 0.94058 1.02459 0.95862 0.93831 0.89491 0.92681 0.93360 0.92382 0.77519 0.88889 0.89820 0.89693 0.90258 0.91361 0.91440 0.86492 0.87877 0.88153 0.88241 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.51 37.16 0.32 -3.29 16 2 C -0.14 -3.32 5.11 -26.73 -0.14 -3.46 16 3 C 0.25 6.16 1.83 -69.08 -0.13 6.03 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.78 9.31 -34.44 -0.32 -15.10 16 6 H 0.08 2.28 7.98 -52.48 -0.42 1.87 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 8 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.88 22.82 24.41 -169.99 -4.15 18.67 16 10 H -0.28 -6.99 6.83 56.52 0.39 -6.60 16 11 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.26 -6.78 6.53 56.52 0.37 -6.41 16 13 N -0.70 -14.52 5.02 -54.92 -0.28 -14.80 16 14 C 0.51 9.94 4.78 -10.98 -0.05 9.88 16 15 O -0.53 -12.23 11.88 -16.72 -0.20 -12.43 16 16 C 0.12 1.67 3.54 -67.54 -0.24 1.43 16 17 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 18 C -0.12 -1.32 6.49 -24.58 -0.16 -1.48 16 19 C -0.13 -0.98 6.95 -24.90 -0.17 -1.15 16 20 C 0.11 0.94 6.23 -3.07 -0.02 0.92 16 21 N -0.61 -8.27 3.13 -164.32 -0.51 -8.78 16 22 C 0.56 8.84 6.75 -10.98 -0.07 8.77 16 23 O -0.51 -10.12 11.97 -16.72 -0.20 -10.32 16 24 C -0.19 -2.17 5.58 -91.77 -0.51 -2.68 16 25 C -0.15 -1.65 10.23 -26.73 -0.27 -1.93 16 26 C -0.15 -1.65 10.04 -26.73 -0.27 -1.92 16 27 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.04 1.07 7.85 -51.93 -0.41 0.67 16 29 H 0.09 2.06 3.16 -51.93 -0.16 1.90 16 30 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.23 3.22 -51.93 -0.17 1.06 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.39 7.13 8.54 -40.82 -0.35 6.79 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.12 1.02 7.74 -51.93 -0.40 0.62 16 41 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.11 1.45 7.67 -51.93 -0.40 1.05 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -35.24 340.35 -8.47 -43.72 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.90 Total: 6.85 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.14 Total: -1.79 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.02 Total: -49.83 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.40 Total: -22.75 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.15 Total: 18.67 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.24 -8.47 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592790600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.301 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds