Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46573 * 2 1 4 4 H 1.09001 * 109.47135 * 55.00048 * 3 2 1 5 5 C 1.50703 * 109.46796 * 174.99767 * 3 2 1 6 6 H 1.08003 * 119.99813 * 120.00356 * 5 3 2 7 7 C 1.37875 * 119.99982 * 299.99980 * 5 3 2 8 8 N 1.31518 * 119.99820 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48511 * 109.46796 * 90.00152 * 9 7 5 11 11 H 1.48499 * 109.47474 * 209.99876 * 9 7 5 12 12 H 1.48497 * 109.47442 * 330.00222 * 9 7 5 13 13 N 1.46503 * 109.47152 * 294.99668 * 3 2 1 14 14 C 1.34778 * 119.99361 * 85.00521 * 13 3 2 15 15 O 1.21276 * 120.00771 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99181 * 180.02562 * 14 13 3 17 17 H 1.08992 * 110.41771 * 35.80355 * 16 14 13 18 18 C 1.54906 * 110.36400 * 273.50291 * 16 14 13 19 19 C 1.55158 * 101.61528 * 204.17533 * 18 16 14 20 20 C 1.54322 * 102.94257 * 35.48334 * 19 18 16 21 21 N 1.47018 * 107.27343 * 337.80835 * 20 19 18 22 22 C 1.34777 * 125.65213 * 178.90278 * 21 20 19 23 23 O 1.21280 * 120.00376 * 174.56694 * 22 21 20 24 24 C 1.50704 * 119.99490 * 354.57372 * 22 21 20 25 25 C 1.52994 * 117.49771 * 248.61577 * 24 22 21 26 26 C 1.53000 * 60.00297 * 252.51763 * 25 24 22 27 27 H 1.09008 * 109.46443 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47606 * 299.99788 * 1 2 3 29 29 H 1.09001 * 109.47082 * 60.00501 * 1 2 3 30 30 H 1.08998 * 109.47173 * 240.00289 * 2 1 3 31 31 H 1.09001 * 109.47082 * 119.99499 * 2 1 3 32 32 H 0.96998 * 119.99959 * 179.97438 * 8 7 5 33 33 H 0.96991 * 119.99740 * 264.99929 * 13 3 2 34 34 H 1.08995 * 111.00272 * 86.08377 * 18 16 14 35 35 H 1.09000 * 111.00813 * 322.26974 * 18 16 14 36 36 H 1.09003 * 110.72265 * 153.85114 * 19 18 16 37 37 H 1.09008 * 110.72010 * 276.94374 * 19 18 16 38 38 H 1.09001 * 109.88036 * 97.22771 * 20 19 18 39 39 H 1.08996 * 109.88007 * 218.23328 * 20 19 18 40 40 H 1.09002 * 115.55222 * 34.32992 * 24 22 21 41 41 H 1.09000 * 117.49685 * 0.02562 * 25 24 22 42 42 H 1.09005 * 117.49967 * 145.02520 * 25 24 22 43 43 H 1.09009 * 117.49721 * 252.51409 * 26 25 24 44 44 H 1.08993 * 117.52365 * 107.48388 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4445 0.1239 6 1 4.1471 1.8891 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8798 1.3359 9 14 3.0963 0.1103 2.5708 10 1 2.8745 -1.3259 2.2646 11 1 3.7940 0.2362 3.8756 12 1 1.7880 0.8095 2.6396 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3669 15 8 -0.3397 2.6319 -0.4344 16 6 0.0361 3.3376 -2.6549 17 1 0.4512 2.8018 -3.5084 18 6 0.5102 4.8123 -2.6616 19 6 -0.4820 5.4548 -3.6667 20 6 -1.7946 4.6911 -3.3927 21 7 -1.4328 3.4133 -2.7620 22 6 -2.2998 2.4680 -2.3485 23 8 -1.8866 1.4073 -1.9301 24 6 -3.7830 2.7289 -2.4063 25 6 -4.5264 2.8775 -1.0774 26 6 -4.7153 1.6163 -1.9227 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8770 0.4820 2.1129 33 1 2.2719 2.1232 -1.9977 34 1 1.5362 4.8912 -3.0210 35 1 0.4093 5.2597 -1.6728 36 1 -0.6044 6.5183 -3.4614 37 1 -0.1480 5.2975 -4.6923 38 1 -2.4271 5.2705 -2.7201 39 1 -2.3200 4.5088 -4.3301 40 1 -4.1206 3.3401 -3.2433 41 1 -3.9426 2.7870 -0.1613 42 1 -5.3533 3.5868 -1.0398 43 1 -5.6665 1.4958 -2.4413 44 1 -4.2560 0.6956 -1.5632 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592790600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -61.060143 kcal Electronic energy + Delta-G solvation = -25305.625849 eV Core-core repulsion = 21837.084732 eV Total energy + Delta-G solvation = -3468.541117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74339 -40.12717 -38.56833 -36.98512 -36.79514 -34.42244 -33.37978 -32.55057 -30.60514 -29.21181 -26.20303 -24.85534 -23.96607 -23.33028 -22.79792 -21.95197 -21.25721 -20.08507 -19.11640 -18.39707 -18.00567 -17.52852 -16.86516 -16.44372 -16.13367 -15.65291 -15.63911 -15.20982 -15.09711 -14.62930 -14.46341 -14.30717 -13.94392 -13.84233 -13.56500 -13.51103 -13.13626 -12.93270 -12.78293 -12.65646 -12.46127 -12.36198 -12.21572 -11.90636 -11.69901 -11.49862 -11.43688 -11.38260 -11.26120 -10.90777 -10.70016 -10.62551 -9.73900 -9.57006 -8.42210 -6.46103 1.21174 1.28082 1.39497 1.55286 1.74026 2.02457 2.21478 2.52382 2.93428 2.97179 3.45868 3.63966 3.79600 3.88980 3.91270 3.99534 4.11033 4.18900 4.22354 4.26101 4.29337 4.46479 4.51644 4.71633 4.78716 4.81388 4.85117 4.89253 4.93472 4.94281 5.03098 5.09912 5.11575 5.21922 5.26419 5.31267 5.36116 5.40360 5.59990 5.68182 6.13371 6.54903 6.56715 6.91261 7.17641 7.34082 7.54008 8.72870 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.005168 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.490819 B = 5416.924663 C = 6478.721933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.257 3.743 4 H 0.015 0.985 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.036 3.964 8 N -0.929 5.929 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.567 6.567 16 C 0.116 3.884 17 H 0.107 0.893 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.096 3.904 21 N -0.608 5.608 22 C 0.542 3.458 23 O -0.563 6.563 24 C -0.184 4.184 25 C -0.147 4.147 26 C -0.149 4.149 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.271 0.729 33 H 0.404 0.596 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.157 0.843 41 H 0.065 0.935 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.817 10.604 -14.529 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.152 3.848 4 H 0.032 0.968 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.164 4.164 8 N -0.568 5.568 9 Si 0.759 3.241 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.352 5.352 14 C 0.287 3.713 15 O -0.445 6.445 16 C 0.008 3.992 17 H 0.125 0.875 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.025 4.025 21 N -0.343 5.343 22 C 0.333 3.667 23 O -0.441 6.441 24 C -0.205 4.205 25 C -0.184 4.184 26 C -0.187 4.187 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.175 0.825 41 H 0.084 0.916 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.052 9.911 -13.508 25.371 hybrid contribution 0.627 -0.823 0.983 1.427 sum -18.425 9.088 -12.524 24.061 Atomic orbital electron populations 1.21922 0.95286 0.99638 1.02997 1.22195 0.95584 0.99028 1.00331 1.18652 0.93241 0.89056 0.83880 0.96762 1.21276 0.90053 1.38447 1.06984 0.91926 1.25423 0.95613 0.95809 0.99567 1.69951 1.09879 1.46158 1.30833 0.86120 0.79145 0.79810 0.79001 1.19093 1.21422 1.19541 1.45909 1.15935 1.56456 1.16930 1.21068 0.81420 0.78379 0.90436 1.90640 1.51715 1.59978 1.42209 1.21971 0.83139 0.99504 0.94557 0.87521 1.22782 1.01981 0.89775 1.01222 1.22674 0.91871 1.00739 0.99952 1.22354 0.99024 0.82659 0.98500 1.48331 1.04412 1.20172 1.61393 1.20049 0.88305 0.82602 0.75762 1.90634 1.79811 1.26864 1.46769 1.22215 0.88428 1.07445 1.02363 1.22929 1.01878 1.01469 0.92140 1.22976 1.00356 0.92636 1.02696 0.94272 0.95924 0.89402 0.91883 0.94310 0.92000 0.76080 0.87222 0.92027 0.87398 0.87916 0.90560 0.88386 0.82536 0.91624 0.84478 0.84689 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 8.51 71.98 0.61 -6.19 16 2 C -0.13 -6.58 5.11 30.60 0.16 -6.42 16 3 C 0.26 13.16 1.83 44.25 0.08 13.24 16 4 H 0.01 0.84 6.63 -2.39 -0.02 0.82 16 5 C -0.53 -30.02 9.31 25.60 0.24 -29.78 16 6 H 0.06 3.69 7.98 -2.91 -0.02 3.67 16 7 C 0.04 2.11 5.45 84.65 0.46 2.57 16 8 N -0.93 -56.88 13.96 21.45 0.30 -56.58 16 9 Si 0.93 47.78 24.41 68.60 1.67 49.46 16 10 H -0.26 -13.04 6.83 99.48 0.68 -12.36 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.27 -14.20 6.53 99.48 0.65 -13.55 16 13 N -0.70 -29.65 5.02 -446.07 -2.24 -31.89 16 14 C 0.50 19.97 4.78 87.66 0.42 20.39 16 15 O -0.57 -27.21 11.88 18.29 0.22 -26.99 16 16 C 0.12 3.17 3.54 44.71 0.16 3.33 16 17 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 18 C -0.12 -2.33 6.49 31.99 0.21 -2.12 16 19 C -0.11 -1.23 6.95 31.78 0.22 -1.01 16 20 C 0.10 1.33 6.23 86.73 0.54 1.87 16 21 N -0.61 -15.51 3.13 -792.17 -2.48 -17.99 16 22 C 0.54 16.80 6.75 87.66 0.59 17.39 16 23 O -0.56 -23.14 11.97 18.28 0.22 -22.92 16 24 C -0.18 -3.88 5.58 -11.54 -0.06 -3.94 16 25 C -0.15 -3.03 10.23 30.59 0.31 -2.71 16 26 C -0.15 -3.09 10.04 30.60 0.31 -2.79 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.09 4.28 3.16 -2.39 -0.01 4.27 16 30 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.04 1.98 3.22 -2.39 -0.01 1.97 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.40 14.81 8.54 -92.72 -0.79 14.02 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.16 2.00 7.74 -2.39 -0.02 1.98 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.14 1.79 8.14 -2.38 -0.02 1.78 16 44 H 0.07 2.07 7.67 -2.39 -0.02 2.05 16 Total: -1.00 -80.96 340.35 2.07 -78.90 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.13 Total: 24.21 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.24 Total: 3.83 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.42 Total: -106.47 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: 0.44 Total: -49.92 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.46 kcal Total: -80.96 2.07 -78.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592790600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.837 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds