Wall clock time and date at job start Tue Mar 31 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34892 * 117.00428 * 2 1 4 4 O 1.21618 * 119.99991 * 0.02562 * 3 2 1 5 5 C 1.46497 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.37986 * 126.26443 * 179.97438 * 5 3 2 7 7 C 1.39792 * 106.96989 * 180.02562 * 6 5 3 8 8 C 1.35488 * 107.84268 * 359.97438 * 7 6 5 9 9 C 1.50705 * 125.50824 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46900 * 95.38297 * 9 8 7 11 11 C 1.46907 * 110.99824 * 287.94231 * 10 9 8 12 12 C 1.50697 * 109.46985 * 170.00327 * 11 10 9 13 13 H 1.08004 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00372 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99771 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47519 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47440 * 119.99982 * 16 14 12 19 19 H 1.48506 * 109.46920 * 239.99601 * 16 14 12 20 20 C 1.46899 * 110.99783 * 163.99031 * 10 9 8 21 21 C 1.52996 * 109.46810 * 294.07330 * 20 10 9 22 22 C 1.53001 * 109.47275 * 54.07501 * 20 10 9 23 23 N 1.34955 * 108.98264 * 0.26489 * 8 7 6 24 24 C 1.46504 * 125.63199 * 179.73632 * 23 8 7 25 25 H 1.08999 * 109.46863 * 300.00541 * 1 2 3 26 26 H 1.09004 * 109.46922 * 59.99564 * 1 2 3 27 27 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.07999 * 126.51523 * 0.03467 * 6 5 3 29 29 H 1.08004 * 126.08213 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47180 * 335.38704 * 9 8 7 31 31 H 1.08993 * 109.47144 * 215.38148 * 9 8 7 32 32 H 1.08995 * 109.47091 * 289.99971 * 11 10 9 33 33 H 1.09001 * 109.46917 * 49.99976 * 11 10 9 34 34 H 0.96998 * 120.00393 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.46810 * 174.07515 * 20 10 9 36 36 H 1.09003 * 109.47420 * 65.50934 * 21 20 10 37 37 H 1.08998 * 109.46855 * 185.50458 * 21 20 10 38 38 H 1.09000 * 109.47556 * 305.50534 * 21 20 10 39 39 H 1.08997 * 109.46826 * 64.69021 * 22 20 10 40 40 H 1.09001 * 109.46944 * 184.69122 * 22 20 10 41 41 H 1.09001 * 109.46970 * 304.69008 * 22 20 10 42 42 H 1.09002 * 109.46878 * 95.52523 * 24 23 8 43 43 H 1.08999 * 109.47186 * 215.51811 * 24 23 8 44 44 H 1.08994 * 109.47419 * 335.52615 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2219 0.0005 5 6 3.5275 1.2784 0.0006 6 6 4.2844 2.4321 0.0001 7 6 5.6261 2.0398 0.0004 8 6 5.6626 0.6854 0.0015 9 6 6.9126 -0.1565 0.0015 10 7 7.2468 -0.5367 1.3806 11 6 7.7547 0.6163 2.1361 12 6 7.8538 0.2561 3.5960 13 1 7.5678 -0.7306 3.9294 14 6 8.3088 1.1863 4.5063 15 7 8.6567 2.3879 4.1006 16 14 8.4310 0.7399 6.3161 17 1 7.9822 -0.6622 6.5115 18 1 9.8397 0.8764 6.7657 19 1 7.5676 1.6507 7.1100 20 6 8.2098 -1.6458 1.4022 21 6 7.5542 -2.9016 0.8244 22 6 9.4329 -1.2758 0.5608 23 7 4.3988 0.2122 -0.0039 24 6 4.0170 -1.2022 -0.0101 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.9112 3.4456 -0.0002 29 1 6.4816 2.6991 0.0005 30 1 7.7357 0.4150 -0.4274 31 1 6.7455 -1.0549 -0.5926 32 1 8.7410 0.8901 1.7617 33 1 7.0735 1.4586 2.0151 34 1 8.9764 3.0425 4.7410 35 1 8.5200 -1.8376 2.4295 36 1 7.3326 -2.7430 -0.2310 37 1 8.2336 -3.7474 0.9299 38 1 6.6294 -3.1092 1.3627 39 1 9.9477 -0.4317 1.0197 40 1 10.1093 -2.1289 0.5082 41 1 9.1130 -1.0031 -0.4449 42 1 3.8238 -1.5308 1.0110 43 1 3.1166 -1.3329 -0.6103 44 1 4.8266 -1.7952 -0.4356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602446412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:22 Heat of formation + Delta-G solvation = -31.812347 kcal Electronic energy + Delta-G solvation = -24633.143388 eV Core-core repulsion = 21165.870551 eV Total energy + Delta-G solvation = -3467.272837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28478 -39.77179 -37.67090 -36.33731 -32.84000 -32.58323 -31.67784 -29.73462 -28.10506 -26.84883 -26.62547 -26.22464 -24.68523 -22.51157 -21.89377 -20.07157 -19.58820 -18.56484 -17.66162 -16.77899 -16.41551 -16.21401 -15.75295 -15.10162 -14.52291 -14.40215 -14.10587 -13.82123 -13.47413 -13.23940 -13.09131 -12.96342 -12.68240 -12.58962 -12.25929 -12.09620 -11.97799 -11.78582 -11.59520 -11.45584 -11.25201 -10.90451 -10.83195 -10.73589 -10.66473 -10.56084 -10.44850 -10.07041 -9.77858 -9.14704 -8.44284 -8.34472 -7.81846 -7.27375 -6.00003 -4.00255 1.46877 2.71152 2.93861 3.15040 3.31707 3.39761 3.43190 3.45790 4.44552 4.83029 4.91745 5.00274 5.03079 5.09053 5.23524 5.34160 5.36616 5.39796 5.49175 5.53189 5.67928 5.74512 5.80456 5.85190 5.92091 5.95413 5.99656 6.19553 6.20505 6.28452 6.42311 6.46029 6.61142 6.70592 6.81699 7.12492 7.32274 7.32783 7.40994 7.51886 7.80268 7.89040 8.12154 8.19522 8.53863 9.06356 9.63173 11.10816 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.004849 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.503547 B = 5772.731889 C = 6623.142756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.364 6.364 3 C 0.542 3.458 4 O -0.511 6.511 5 C -0.070 4.070 6 C -0.088 4.088 7 C -0.204 4.204 8 C 0.101 3.899 9 C 0.107 3.893 10 N -0.525 5.525 11 C 0.187 3.813 12 C -0.505 4.505 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.081 3.919 21 C -0.143 4.143 22 C -0.182 4.182 23 N -0.404 5.404 24 C 0.075 3.925 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.055 0.945 31 H 0.072 0.928 32 H -0.004 1.004 33 H 0.041 0.959 34 H 0.260 0.740 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.650 -8.385 -11.280 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.281 6.281 3 C 0.389 3.611 4 O -0.400 6.400 5 C -0.179 4.179 6 C -0.114 4.114 7 C -0.228 4.228 8 C -0.019 4.019 9 C -0.021 4.021 10 N -0.250 5.250 11 C 0.063 3.937 12 C -0.544 4.544 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.028 4.028 21 C -0.200 4.200 22 C -0.241 4.241 23 N -0.079 5.079 24 C -0.066 4.066 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.164 0.836 29 H 0.163 0.837 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.014 0.986 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.420 -8.470 -10.978 16.763 hybrid contribution 0.634 0.263 0.804 1.057 sum -8.786 -8.207 -10.174 15.750 Atomic orbital electron populations 1.23213 0.76459 1.03388 1.02538 1.86624 1.23325 1.33088 1.85064 1.19852 0.87088 0.81408 0.72748 1.90863 1.65618 1.35809 1.47689 1.19112 0.86013 0.88203 1.24528 1.21234 0.92387 0.96427 1.01383 1.20710 0.96815 0.93452 1.11777 1.20484 0.85004 0.94007 1.02374 1.20671 0.91255 0.96686 0.93532 1.62400 1.43235 1.10491 1.08836 1.19856 0.93895 0.87540 0.92454 1.21146 1.42505 0.98960 0.91747 0.92109 1.24935 0.95694 0.94976 0.98794 1.69953 1.44728 1.04447 1.34363 0.86530 0.77476 0.78501 0.85422 1.19795 1.21181 1.21089 1.21611 0.89897 0.90740 1.00544 1.21909 1.00969 0.97305 0.99866 1.22449 0.99738 1.01950 0.99945 1.43652 1.05168 1.06081 1.52973 1.22118 1.01884 0.78458 1.04151 0.91886 0.92028 0.88275 0.83604 0.83693 0.92685 0.90984 0.98639 0.94107 0.93050 0.88663 0.93763 0.93079 0.92283 0.91712 0.93245 0.93475 0.90188 0.89575 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.36 -4.83 8.13 -41.02 -0.33 -5.16 16 3 C 0.54 8.84 7.92 34.06 0.27 9.11 16 4 O -0.51 -9.27 16.68 -19.36 -0.32 -9.59 16 5 C -0.07 -1.20 6.89 -82.00 -0.56 -1.77 16 6 C -0.09 -1.54 10.66 -39.09 -0.42 -1.95 16 7 C -0.20 -3.67 9.56 -39.98 -0.38 -4.05 16 8 C 0.10 1.76 5.81 -82.20 -0.48 1.28 16 9 C 0.11 1.77 3.80 -4.97 -0.02 1.75 16 10 N -0.53 -10.26 4.39 -229.51 -1.01 -11.27 16 11 C 0.19 4.60 4.45 -4.97 -0.02 4.58 16 12 C -0.50 -13.74 8.37 -34.44 -0.29 -14.03 16 13 H 0.06 1.65 7.18 -52.48 -0.38 1.28 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.08 1.40 2.78 -67.71 -0.19 1.21 16 21 C -0.14 -1.93 9.02 37.16 0.34 -1.60 16 22 C -0.18 -2.90 8.54 37.16 0.32 -2.58 16 23 N -0.40 -6.53 3.15 -115.77 -0.36 -6.89 16 24 C 0.08 0.94 10.22 59.85 0.61 1.55 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.15 2.55 8.06 -52.48 -0.42 2.13 16 30 H 0.06 0.92 7.04 -51.93 -0.37 0.55 16 31 H 0.07 1.01 4.96 -51.93 -0.26 0.75 16 32 H 0.00 -0.11 6.49 -51.93 -0.34 -0.44 16 33 H 0.04 1.10 6.37 -51.93 -0.33 0.77 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 35 H 0.10 1.90 6.65 -51.93 -0.35 1.55 16 36 H 0.04 0.53 6.51 -51.93 -0.34 0.19 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.20 6.77 -51.93 -0.35 0.85 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 0.94 6.51 -51.93 -0.34 0.60 16 44 H 0.08 0.91 6.88 -51.93 -0.36 0.56 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -31.65 353.74 -7.51 -39.16 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.67 Total: 0.95 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.15 Total: -3.56 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.64 Total: -43.65 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.66 Total: -14.76 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.65 -7.51 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.343 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds